HEADER TRANSFERASE 14-NOV-19 6LBP TITLE STRUCTURE OF THE GLUTAMINE PHOSPHORIBOSYLPYROPHOSPHATE TITLE 2 AMIDOTRANSFERASE FROM ARABIDOPSIS THALIANA COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMIDOPHOSPHORIBOSYLTRANSFERASE 2, CHLOROPLASTIC; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PRPP2,GLUTAMINE PHOSPHORIBOSYLPYROPHOSPHATE AMIDOTRANSFERASE COMPND 5 2,ATGPRAT2,PROTEIN CHLOROPLAST IMPORT APPARATUS 1,PROTEIN COMPND 6 DIFFERENTIAL DEVELOPMENT OF VASCULAR ASSOCIATED CELLS; COMPND 7 EC: 2.4.2.14; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: ASE2, CIA1, DOV1, GPRAT2, PURF2, AT4G34740, T4L20.320; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AMIDOTRANSFERASE, TETRAMER, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.YI,X.CAO,F.HAN,Y.FENG REVDAT 2 22-NOV-23 6LBP 1 REMARK REVDAT 1 29-APR-20 6LBP 0 JRNL AUTH X.CAO,B.DU,F.HAN,Y.ZHOU,J.REN,W.WANG,Z.CHEN,Y.ZHANG JRNL TITL CRYSTAL STRUCTURE OF THE CHLOROPLASTIC GLUTAMINE JRNL TITL 2 PHOSPHORIBOSYLPYROPHOSPHATE AMIDOTRANSFERASE GPRAT2 JRNL TITL 3 FROMARABIDOPSIS THALIANA. JRNL REF FRONT PLANT SCI V. 11 157 2020 JRNL REFN ESSN 1664-462X JRNL PMID 32174940 JRNL DOI 10.3389/FPLS.2020.00157 REMARK 2 REMARK 2 RESOLUTION. 3.07 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.07 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.66 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.570 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 38090 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 3685 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.6560 - 9.0364 0.98 2639 152 0.2096 0.2696 REMARK 3 2 9.0364 - 7.1902 1.00 2711 131 0.1950 0.2403 REMARK 3 3 7.1902 - 6.2865 1.00 2746 131 0.2000 0.2411 REMARK 3 4 6.2865 - 5.7140 1.00 2685 151 0.1980 0.2465 REMARK 3 5 5.7140 - 5.3058 1.00 2706 144 0.1874 0.2150 REMARK 3 6 5.3058 - 4.9938 1.00 2655 174 0.1550 0.1638 REMARK 3 7 4.9938 - 4.7442 1.00 2689 167 0.1456 0.1723 REMARK 3 8 4.7442 - 4.5381 1.00 2729 138 0.1386 0.1525 REMARK 3 9 4.5381 - 4.3637 1.00 2683 122 0.1404 0.1586 REMARK 3 10 4.3637 - 4.2133 1.00 2690 163 0.1642 0.1967 REMARK 3 11 4.2133 - 4.0818 1.00 2706 160 0.1617 0.1669 REMARK 3 12 4.0818 - 3.9652 1.00 2672 140 0.1744 0.1814 REMARK 3 13 3.9652 - 3.8610 1.00 2766 146 0.1815 0.2401 REMARK 3 14 3.8610 - 3.7669 1.00 2650 147 0.1916 0.2734 REMARK 3 15 3.7669 - 3.6813 1.00 2755 128 0.2052 0.2287 REMARK 3 16 3.6813 - 3.6030 1.00 2692 164 0.2220 0.2659 REMARK 3 17 3.6030 - 3.5310 1.00 2696 115 0.2015 0.2322 REMARK 3 18 3.5310 - 3.4644 1.00 2689 165 0.2029 0.2483 REMARK 3 19 3.4644 - 3.4026 1.00 2679 140 0.2028 0.2313 REMARK 3 20 3.4026 - 3.3450 1.00 2746 145 0.2094 0.2084 REMARK 3 21 3.3450 - 3.2911 1.00 2718 104 0.2038 0.3163 REMARK 3 22 3.2911 - 3.2404 1.00 2704 131 0.2247 0.2661 REMARK 3 23 3.2404 - 3.1928 1.00 2680 152 0.2364 0.2567 REMARK 3 24 3.1928 - 3.1479 0.99 2705 134 0.2551 0.3037 REMARK 3 25 3.1479 - 3.1054 0.99 2684 125 0.2829 0.3595 REMARK 3 26 3.1054 - 3.0650 0.83 2273 116 0.2830 0.2991 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.670 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 4345 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6LBP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1300014510. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JAN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 130 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38107 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.065 REMARK 200 RESOLUTION RANGE LOW (A) : 36.656 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.2500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.07 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.18 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.73200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.110 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1GPH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 75.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE TRIBASIC PH 5.6, REMARK 280 1.0 M AMMONIUM PHOSPHATE MONOBASIC, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.39967 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 72.79933 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 72.79933 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 36.39967 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 61130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -162.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 36.39967 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 75 REMARK 465 ASN A 76 REMARK 465 ASP A 77 REMARK 465 ASP A 78 REMARK 465 TYR A 79 REMARK 465 ASP A 80 REMARK 465 GLU A 81 REMARK 465 LYS A 82 REMARK 465 PRO A 83 REMARK 465 ARG A 84 REMARK 465 GLU A 85 REMARK 465 GLU A 86 REMARK 465 GLY A 547 REMARK 465 LEU A 548 REMARK 465 VAL A 549 REMARK 465 GLY A 550 REMARK 465 GLY A 551 REMARK 465 ILE A 552 REMARK 465 HIS A 553 REMARK 465 ASN A 554 REMARK 465 ILE A 555 REMARK 465 GLU A 556 REMARK 465 GLY A 557 REMARK 465 GLY A 558 REMARK 465 TRP A 559 REMARK 465 VAL A 560 REMARK 465 ARG A 561 REMARK 465 ASP B 75 REMARK 465 ASN B 76 REMARK 465 ASP B 77 REMARK 465 ASP B 78 REMARK 465 TYR B 79 REMARK 465 ASP B 80 REMARK 465 GLU B 81 REMARK 465 LYS B 82 REMARK 465 PRO B 83 REMARK 465 ARG B 84 REMARK 465 GLU B 85 REMARK 465 GLU B 86 REMARK 465 GLY B 547 REMARK 465 LEU B 548 REMARK 465 VAL B 549 REMARK 465 GLY B 550 REMARK 465 GLY B 551 REMARK 465 ILE B 552 REMARK 465 HIS B 553 REMARK 465 ASN B 554 REMARK 465 ILE B 555 REMARK 465 GLU B 556 REMARK 465 GLY B 557 REMARK 465 GLY B 558 REMARK 465 TRP B 559 REMARK 465 VAL B 560 REMARK 465 ARG B 561 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 252 18.59 -153.65 REMARK 500 GLU A 293 -60.52 -105.11 REMARK 500 ASP A 305 -157.25 -145.77 REMARK 500 LEU A 314 78.20 -116.28 REMARK 500 PRO A 318 -151.71 -69.12 REMARK 500 TYR A 329 -46.70 -138.64 REMARK 500 ARG A 398 -17.30 70.33 REMARK 500 VAL A 436 -79.07 -114.73 REMARK 500 ALA A 461 48.14 -83.89 REMARK 500 TYR A 471 37.83 -140.39 REMARK 500 ASP A 542 147.12 -171.03 REMARK 500 ASN B 193 36.67 -98.31 REMARK 500 PRO B 228 -159.56 -85.38 REMARK 500 ASP B 252 20.08 -153.84 REMARK 500 ASN B 273 -179.92 -65.32 REMARK 500 GLU B 293 -60.50 -104.78 REMARK 500 ASP B 305 -157.11 -145.54 REMARK 500 LEU B 314 78.07 -115.59 REMARK 500 PRO B 318 -158.57 -87.09 REMARK 500 TYR B 329 -47.48 -139.48 REMARK 500 ARG B 398 -2.42 79.80 REMARK 500 VAL B 436 -80.81 -98.31 REMARK 500 ALA B 461 48.36 -82.37 REMARK 500 TYR B 471 36.83 -141.62 REMARK 500 PRO B 476 170.12 -57.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 600 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 323 SG REMARK 620 2 SF4 A 600 S1 100.9 REMARK 620 3 SF4 A 600 S2 118.2 105.2 REMARK 620 4 SF4 A 600 S3 121.2 104.6 104.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 600 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 469 SG REMARK 620 2 SF4 A 600 S1 110.3 REMARK 620 3 SF4 A 600 S2 97.7 105.0 REMARK 620 4 SF4 A 600 S4 131.9 104.5 104.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 600 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 520 SG REMARK 620 2 SF4 A 600 S1 109.6 REMARK 620 3 SF4 A 600 S3 104.9 104.6 REMARK 620 4 SF4 A 600 S4 126.9 104.4 104.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 600 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 523 SG REMARK 620 2 SF4 A 600 S2 114.8 REMARK 620 3 SF4 A 600 S3 96.9 104.6 REMARK 620 4 SF4 A 600 S4 128.7 104.2 104.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 600 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 323 SG REMARK 620 2 SF4 B 600 S1 100.5 REMARK 620 3 SF4 B 600 S2 119.7 105.0 REMARK 620 4 SF4 B 600 S3 120.2 104.8 104.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 600 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 469 SG REMARK 620 2 SF4 B 600 S1 110.5 REMARK 620 3 SF4 B 600 S2 94.4 104.7 REMARK 620 4 SF4 B 600 S4 132.5 106.6 103.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 600 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 520 SG REMARK 620 2 SF4 B 600 S1 100.2 REMARK 620 3 SF4 B 600 S3 107.2 104.1 REMARK 620 4 SF4 B 600 S4 132.8 105.1 104.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 600 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 523 SG REMARK 620 2 SF4 B 600 S2 120.0 REMARK 620 3 SF4 B 600 S3 90.5 104.4 REMARK 620 4 SF4 B 600 S4 128.1 104.1 104.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SF4 A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SF4 B 600 DBREF 6LBP A 75 561 UNP Q9STG9 ASE2_ARATH 75 561 DBREF 6LBP B 75 561 UNP Q9STG9 ASE2_ARATH 75 561 SEQRES 1 A 487 ASP ASN ASP ASP TYR ASP GLU LYS PRO ARG GLU GLU CYS SEQRES 2 A 487 GLY VAL VAL GLY ILE TYR GLY ASP SER GLU ALA SER ARG SEQRES 3 A 487 LEU CYS TYR LEU ALA LEU HIS ALA LEU GLN HIS ARG GLY SEQRES 4 A 487 GLN GLU GLY ALA GLY ILE VAL THR VAL SER LYS ASP LYS SEQRES 5 A 487 VAL LEU GLN THR ILE THR GLY VAL GLY LEU VAL SER GLU SEQRES 6 A 487 VAL PHE SER GLU SER LYS LEU ASP GLN LEU PRO GLY ASP SEQRES 7 A 487 ILE ALA ILE GLY HIS VAL ARG TYR SER THR ALA GLY SER SEQRES 8 A 487 SER MET LEU LYS ASN VAL GLN PRO PHE VAL ALA GLY TYR SEQRES 9 A 487 ARG PHE GLY SER VAL GLY VAL ALA HIS ASN GLY ASN LEU SEQRES 10 A 487 VAL ASN TYR THR LYS LEU ARG ALA ASP LEU GLU GLU ASN SEQRES 11 A 487 GLY SER ILE PHE ASN THR SER SER ASP THR GLU VAL VAL SEQRES 12 A 487 LEU HIS LEU ILE ALA ILE SER LYS ALA ARG PRO PHE PHE SEQRES 13 A 487 MET ARG ILE VAL ASP ALA CYS GLU LYS LEU GLN GLY ALA SEQRES 14 A 487 TYR SER MET VAL PHE VAL THR GLU ASP LYS LEU VAL ALA SEQRES 15 A 487 VAL ARG ASP PRO HIS GLY PHE ARG PRO LEU VAL MET GLY SEQRES 16 A 487 ARG ARG SER ASN GLY ALA VAL VAL PHE ALA SER GLU THR SEQRES 17 A 487 CYS ALA LEU ASP LEU ILE GLU ALA THR TYR GLU ARG GLU SEQRES 18 A 487 VAL TYR PRO GLY GLU VAL LEU VAL VAL ASP LYS ASP GLY SEQRES 19 A 487 VAL LYS CYS GLN CYS LEU MET PRO HIS PRO GLU PRO LYS SEQRES 20 A 487 GLN CYS ILE PHE GLU HIS ILE TYR PHE SER LEU PRO ASN SEQRES 21 A 487 SER ILE VAL PHE GLY ARG SER VAL TYR GLU SER ARG HIS SEQRES 22 A 487 VAL PHE GLY GLU ILE LEU ALA THR GLU SER PRO VAL ASP SEQRES 23 A 487 CYS ASP VAL VAL ILE ALA VAL PRO ASP SER GLY VAL VAL SEQRES 24 A 487 ALA ALA LEU GLY TYR ALA ALA LYS ALA GLY VAL ALA PHE SEQRES 25 A 487 GLN GLN GLY LEU ILE ARG SER HIS TYR VAL GLY ARG THR SEQRES 26 A 487 PHE ILE GLU PRO SER GLN LYS ILE ARG ASP PHE GLY VAL SEQRES 27 A 487 LYS LEU LYS LEU SER PRO VAL ARG GLY VAL LEU GLU GLY SEQRES 28 A 487 LYS ARG VAL VAL VAL VAL ASP ASP SER ILE VAL ARG GLY SEQRES 29 A 487 THR THR SER SER LYS ILE VAL ARG LEU LEU ARG GLU ALA SEQRES 30 A 487 GLY ALA LYS GLU VAL HIS MET ARG ILE ALA SER PRO PRO SEQRES 31 A 487 ILE ILE ALA SER CYS TYR TYR GLY VAL ASP THR PRO SER SEQRES 32 A 487 SER ASN GLU LEU ILE SER ASN ARG MET SER VAL ASP GLU SEQRES 33 A 487 ILE ARG ASP TYR ILE GLY CYS ASP SER LEU ALA PHE LEU SEQRES 34 A 487 SER PHE GLU THR LEU LYS LYS HIS LEU GLY GLU ASP SER SEQRES 35 A 487 ARG SER PHE CYS TYR ALA CYS PHE THR GLY ASP TYR PRO SEQRES 36 A 487 VAL LYS PRO THR GLU ASP LYS VAL LYS ARG GLY GLY ASP SEQRES 37 A 487 PHE ILE ASP ASP GLY LEU VAL GLY GLY ILE HIS ASN ILE SEQRES 38 A 487 GLU GLY GLY TRP VAL ARG SEQRES 1 B 487 ASP ASN ASP ASP TYR ASP GLU LYS PRO ARG GLU GLU CYS SEQRES 2 B 487 GLY VAL VAL GLY ILE TYR GLY ASP SER GLU ALA SER ARG SEQRES 3 B 487 LEU CYS TYR LEU ALA LEU HIS ALA LEU GLN HIS ARG GLY SEQRES 4 B 487 GLN GLU GLY ALA GLY ILE VAL THR VAL SER LYS ASP LYS SEQRES 5 B 487 VAL LEU GLN THR ILE THR GLY VAL GLY LEU VAL SER GLU SEQRES 6 B 487 VAL PHE SER GLU SER LYS LEU ASP GLN LEU PRO GLY ASP SEQRES 7 B 487 ILE ALA ILE GLY HIS VAL ARG TYR SER THR ALA GLY SER SEQRES 8 B 487 SER MET LEU LYS ASN VAL GLN PRO PHE VAL ALA GLY TYR SEQRES 9 B 487 ARG PHE GLY SER VAL GLY VAL ALA HIS ASN GLY ASN LEU SEQRES 10 B 487 VAL ASN TYR THR LYS LEU ARG ALA ASP LEU GLU GLU ASN SEQRES 11 B 487 GLY SER ILE PHE ASN THR SER SER ASP THR GLU VAL VAL SEQRES 12 B 487 LEU HIS LEU ILE ALA ILE SER LYS ALA ARG PRO PHE PHE SEQRES 13 B 487 MET ARG ILE VAL ASP ALA CYS GLU LYS LEU GLN GLY ALA SEQRES 14 B 487 TYR SER MET VAL PHE VAL THR GLU ASP LYS LEU VAL ALA SEQRES 15 B 487 VAL ARG ASP PRO HIS GLY PHE ARG PRO LEU VAL MET GLY SEQRES 16 B 487 ARG ARG SER ASN GLY ALA VAL VAL PHE ALA SER GLU THR SEQRES 17 B 487 CYS ALA LEU ASP LEU ILE GLU ALA THR TYR GLU ARG GLU SEQRES 18 B 487 VAL TYR PRO GLY GLU VAL LEU VAL VAL ASP LYS ASP GLY SEQRES 19 B 487 VAL LYS CYS GLN CYS LEU MET PRO HIS PRO GLU PRO LYS SEQRES 20 B 487 GLN CYS ILE PHE GLU HIS ILE TYR PHE SER LEU PRO ASN SEQRES 21 B 487 SER ILE VAL PHE GLY ARG SER VAL TYR GLU SER ARG HIS SEQRES 22 B 487 VAL PHE GLY GLU ILE LEU ALA THR GLU SER PRO VAL ASP SEQRES 23 B 487 CYS ASP VAL VAL ILE ALA VAL PRO ASP SER GLY VAL VAL SEQRES 24 B 487 ALA ALA LEU GLY TYR ALA ALA LYS ALA GLY VAL ALA PHE SEQRES 25 B 487 GLN GLN GLY LEU ILE ARG SER HIS TYR VAL GLY ARG THR SEQRES 26 B 487 PHE ILE GLU PRO SER GLN LYS ILE ARG ASP PHE GLY VAL SEQRES 27 B 487 LYS LEU LYS LEU SER PRO VAL ARG GLY VAL LEU GLU GLY SEQRES 28 B 487 LYS ARG VAL VAL VAL VAL ASP ASP SER ILE VAL ARG GLY SEQRES 29 B 487 THR THR SER SER LYS ILE VAL ARG LEU LEU ARG GLU ALA SEQRES 30 B 487 GLY ALA LYS GLU VAL HIS MET ARG ILE ALA SER PRO PRO SEQRES 31 B 487 ILE ILE ALA SER CYS TYR TYR GLY VAL ASP THR PRO SER SEQRES 32 B 487 SER ASN GLU LEU ILE SER ASN ARG MET SER VAL ASP GLU SEQRES 33 B 487 ILE ARG ASP TYR ILE GLY CYS ASP SER LEU ALA PHE LEU SEQRES 34 B 487 SER PHE GLU THR LEU LYS LYS HIS LEU GLY GLU ASP SER SEQRES 35 B 487 ARG SER PHE CYS TYR ALA CYS PHE THR GLY ASP TYR PRO SEQRES 36 B 487 VAL LYS PRO THR GLU ASP LYS VAL LYS ARG GLY GLY ASP SEQRES 37 B 487 PHE ILE ASP ASP GLY LEU VAL GLY GLY ILE HIS ASN ILE SEQRES 38 B 487 GLU GLY GLY TRP VAL ARG HET SF4 A 600 8 HET SF4 B 600 8 HETNAM SF4 IRON/SULFUR CLUSTER FORMUL 3 SF4 2(FE4 S4) HELIX 1 AA1 GLU A 97 LEU A 109 1 13 HELIX 2 AA2 GLN A 110 GLY A 113 5 4 HELIX 3 AA3 LEU A 136 PHE A 141 1 6 HELIX 4 AA4 SER A 142 ASP A 147 1 6 HELIX 5 AA5 ALA A 163 MET A 167 5 5 HELIX 6 AA6 ASN A 193 GLU A 203 1 11 HELIX 7 AA7 SER A 212 SER A 224 1 13 HELIX 8 AA8 PRO A 228 GLU A 238 1 11 HELIX 9 AA9 GLU A 281 ILE A 288 1 8 HELIX 10 AB1 ILE A 324 TYR A 329 1 6 HELIX 11 AB2 VAL A 342 SER A 357 1 16 HELIX 12 AB3 GLY A 371 GLY A 383 1 13 HELIX 13 AB4 ASP A 409 LEU A 414 1 6 HELIX 14 AB5 VAL A 419 GLU A 424 1 6 HELIX 15 AB6 GLY A 438 ALA A 451 1 14 HELIX 16 AB7 SER A 477 GLU A 480 5 4 HELIX 17 AB8 LEU A 481 MET A 486 1 6 HELIX 18 AB9 SER A 487 GLY A 496 1 10 HELIX 19 AC1 SER A 504 GLY A 513 1 10 HELIX 20 AC2 GLU A 514 ARG A 517 5 4 HELIX 21 AC3 TYR A 521 GLY A 526 1 6 HELIX 22 AC4 GLU B 97 LEU B 109 1 13 HELIX 23 AC5 GLN B 110 GLY B 113 5 4 HELIX 24 AC6 LEU B 136 PHE B 141 1 6 HELIX 25 AC7 SER B 142 ASP B 147 1 6 HELIX 26 AC8 ALA B 163 MET B 167 5 5 HELIX 27 AC9 ASN B 193 GLU B 203 1 11 HELIX 28 AD1 SER B 212 SER B 224 1 13 HELIX 29 AD2 PRO B 228 GLU B 238 1 11 HELIX 30 AD3 GLU B 281 ILE B 288 1 8 HELIX 31 AD4 ILE B 324 TYR B 329 1 6 HELIX 32 AD5 VAL B 342 SER B 357 1 16 HELIX 33 AD6 GLY B 371 GLY B 383 1 13 HELIX 34 AD7 ASP B 409 LEU B 414 1 6 HELIX 35 AD8 VAL B 419 GLU B 424 1 6 HELIX 36 AD9 GLY B 438 ALA B 451 1 14 HELIX 37 AE1 SER B 477 GLU B 480 5 4 HELIX 38 AE2 LEU B 481 MET B 486 1 6 HELIX 39 AE3 SER B 487 GLY B 496 1 10 HELIX 40 AE4 SER B 504 GLY B 513 1 10 HELIX 41 AE5 GLU B 514 ARG B 517 5 4 HELIX 42 AE6 TYR B 521 GLY B 526 1 6 SHEET 1 AA1 7 LEU A 128 VAL A 134 0 SHEET 2 AA1 7 GLY A 116 VAL A 122 -1 N THR A 121 O GLN A 129 SHEET 3 AA1 7 ILE A 153 ARG A 159 -1 O ILE A 155 N VAL A 120 SHEET 4 AA1 7 GLY A 88 TYR A 93 -1 N VAL A 90 O GLY A 156 SHEET 5 AA1 7 VAL A 276 ALA A 279 -1 O VAL A 276 N TYR A 93 SHEET 6 AA1 7 VAL A 267 ARG A 270 -1 N GLY A 269 O VAL A 277 SHEET 7 AA1 7 THR A 291 GLU A 295 -1 O GLU A 293 N MET A 268 SHEET 1 AA2 6 PHE A 174 TYR A 178 0 SHEET 2 AA2 6 GLY A 181 LEU A 191 -1 O GLY A 181 N TYR A 178 SHEET 3 AA2 6 GLY A 242 THR A 250 -1 O VAL A 249 N GLY A 184 SHEET 4 AA2 6 LEU A 254 ARG A 258 -1 O VAL A 255 N PHE A 248 SHEET 5 AA2 6 GLU A 300 VAL A 304 -1 O VAL A 304 N LEU A 254 SHEET 6 AA2 6 VAL A 309 LEU A 314 -1 O LYS A 310 N VAL A 303 SHEET 1 AA3 2 GLN A 322 CYS A 323 0 SHEET 2 AA3 2 PHE A 519 CYS A 520 1 O CYS A 520 N GLN A 322 SHEET 1 AA4 2 ILE A 336 VAL A 337 0 SHEET 2 AA4 2 ARG A 340 SER A 341 -1 O ARG A 340 N VAL A 337 SHEET 1 AA5 4 VAL A 363 ALA A 366 0 SHEET 2 AA5 4 ARG A 427 ASP A 432 1 O VAL A 429 N ILE A 365 SHEET 3 AA5 4 GLU A 455 ILE A 460 1 O HIS A 457 N VAL A 428 SHEET 4 AA5 4 SER A 499 PHE A 502 1 O ALA A 501 N ILE A 460 SHEET 1 AA6 2 LEU A 390 ARG A 392 0 SHEET 2 AA6 2 LEU A 416 PRO A 418 -1 O SER A 417 N ILE A 391 SHEET 1 AA7 7 LEU B 128 VAL B 134 0 SHEET 2 AA7 7 GLY B 116 VAL B 122 -1 N THR B 121 O GLN B 129 SHEET 3 AA7 7 ILE B 153 ARG B 159 -1 O ILE B 155 N VAL B 120 SHEET 4 AA7 7 GLY B 88 TYR B 93 -1 N ILE B 92 O ALA B 154 SHEET 5 AA7 7 VAL B 276 ALA B 279 -1 O VAL B 276 N TYR B 93 SHEET 6 AA7 7 VAL B 267 ARG B 270 -1 N GLY B 269 O VAL B 277 SHEET 7 AA7 7 THR B 291 GLU B 295 -1 O GLU B 293 N MET B 268 SHEET 1 AA8 6 PHE B 174 TYR B 178 0 SHEET 2 AA8 6 GLY B 181 LEU B 191 -1 O GLY B 181 N TYR B 178 SHEET 3 AA8 6 GLY B 242 THR B 250 -1 O VAL B 249 N GLY B 184 SHEET 4 AA8 6 LEU B 254 ARG B 258 -1 O VAL B 255 N PHE B 248 SHEET 5 AA8 6 GLU B 300 VAL B 304 -1 O VAL B 304 N LEU B 254 SHEET 6 AA8 6 VAL B 309 LEU B 314 -1 O LYS B 310 N VAL B 303 SHEET 1 AA9 2 GLN B 322 CYS B 323 0 SHEET 2 AA9 2 PHE B 519 CYS B 520 1 O CYS B 520 N GLN B 322 SHEET 1 AB1 2 ILE B 336 VAL B 337 0 SHEET 2 AB1 2 ARG B 340 SER B 341 -1 O ARG B 340 N VAL B 337 SHEET 1 AB2 4 VAL B 363 ALA B 366 0 SHEET 2 AB2 4 ARG B 427 ASP B 432 1 O VAL B 429 N ILE B 365 SHEET 3 AB2 4 GLU B 455 ILE B 460 1 O HIS B 457 N VAL B 428 SHEET 4 AB2 4 SER B 499 PHE B 502 1 O ALA B 501 N ILE B 460 SHEET 1 AB3 2 LEU B 390 ARG B 392 0 SHEET 2 AB3 2 LEU B 416 PRO B 418 -1 O SER B 417 N ILE B 391 LINK SG CYS A 323 FE4 SF4 A 600 1555 1555 1.99 LINK SG CYS A 469 FE3 SF4 A 600 1555 1555 2.11 LINK SG CYS A 520 FE2 SF4 A 600 1555 1555 2.17 LINK SG CYS A 523 FE1 SF4 A 600 1555 1555 2.26 LINK SG CYS B 323 FE4 SF4 B 600 1555 1555 2.00 LINK SG CYS B 469 FE3 SF4 B 600 1555 1555 2.16 LINK SG CYS B 520 FE2 SF4 B 600 1555 1555 2.17 LINK SG CYS B 523 FE1 SF4 B 600 1555 1555 2.34 CISPEP 1 GLN A 172 PRO A 173 0 10.92 CISPEP 2 ARG A 227 PRO A 228 0 7.13 CISPEP 3 PRO A 368 ASP A 369 0 -7.40 CISPEP 4 GLN B 172 PRO B 173 0 13.57 CISPEP 5 ARG B 227 PRO B 228 0 7.48 CISPEP 6 PRO B 368 ASP B 369 0 -0.01 SITE 1 AC1 6 CYS A 323 CYS A 469 TYR A 471 CYS A 520 SITE 2 AC1 6 ALA A 522 CYS A 523 SITE 1 AC2 6 CYS B 323 CYS B 469 TYR B 471 CYS B 520 SITE 2 AC2 6 ALA B 522 CYS B 523 CRYST1 179.736 179.736 109.199 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005564 0.003212 0.000000 0.00000 SCALE2 0.000000 0.006424 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009158 0.00000