HEADER OXYGEN TRANSPORT 20-NOV-19 6LCW TITLE CROSSLINKED ALPHA(NI)-BETA(NI) HUMAN HEMOGLOBIN A IN THE T QUATERNARY TITLE 2 STRUCTURE AT 95 K: DARK COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMOGLOBIN SUBUNIT ALPHA; COMPND 3 CHAIN: A, C, E, G; COMPND 4 SYNONYM: ALPHA-GLOBIN,HEMOGLOBIN ALPHA CHAIN; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: HEMOGLOBIN SUBUNIT BETA; COMPND 7 CHAIN: B, D, F, H; COMPND 8 SYNONYM: BETA-GLOBIN,HEMOGLOBIN BETA CHAIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606 KEYWDS HEMOGLOBIN, PHOTOLYSIS, OXYGEN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR N.SHIBAYAMA,S.Y.PARK,M.OHKI,A.SATO-TOMITA REVDAT 6 13-NOV-24 6LCW 1 REMARK REVDAT 5 22-NOV-23 6LCW 1 REMARK REVDAT 4 06-JUL-22 6LCW 1 TITLE LINK REVDAT 3 18-MAR-20 6LCW 1 JRNL REVDAT 2 04-MAR-20 6LCW 1 JRNL REVDAT 1 19-FEB-20 6LCW 0 JRNL AUTH N.SHIBAYAMA,A.SATO-TOMITA,M.OHKI,K.ICHIYANAGI,S.Y.PARK JRNL TITL DIRECT OBSERVATION OF LIGAND MIGRATION WITHIN HUMAN JRNL TITL 2 HEMOGLOBIN AT WORK. JRNL REF PROC.NATL.ACAD.SCI.USA V. 117 4741 2020 JRNL REFN ESSN 1091-6490 JRNL PMID 32071219 JRNL DOI 10.1073/PNAS.1913663117 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1839 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.81 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 227487 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 11407 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.8090 - 4.3354 0.97 7250 368 0.1685 0.1796 REMARK 3 2 4.3354 - 3.4470 0.99 7371 382 0.1628 0.1801 REMARK 3 3 3.4470 - 3.0130 0.99 7368 358 0.1867 0.1948 REMARK 3 4 3.0130 - 2.7383 0.99 7368 353 0.1925 0.2045 REMARK 3 5 2.7383 - 2.5425 0.99 7286 411 0.1954 0.2258 REMARK 3 6 2.5425 - 2.3928 0.99 7309 346 0.1953 0.2155 REMARK 3 7 2.3928 - 2.2732 0.99 7304 402 0.1894 0.2082 REMARK 3 8 2.2732 - 2.1744 0.99 7255 380 0.1923 0.2226 REMARK 3 9 2.1744 - 2.0908 0.99 7235 385 0.1951 0.2238 REMARK 3 10 2.0908 - 2.0187 0.99 7301 380 0.1941 0.2172 REMARK 3 11 2.0187 - 1.9556 0.99 7228 376 0.2006 0.2198 REMARK 3 12 1.9556 - 1.8998 0.99 7246 376 0.2094 0.2501 REMARK 3 13 1.8998 - 1.8498 0.99 7175 410 0.2081 0.2355 REMARK 3 14 1.8498 - 1.8047 0.98 7256 392 0.2053 0.2446 REMARK 3 15 1.8047 - 1.7637 0.98 7168 371 0.2090 0.2360 REMARK 3 16 1.7637 - 1.7262 0.98 7210 394 0.2138 0.2430 REMARK 3 17 1.7262 - 1.6917 0.98 7176 403 0.2139 0.2396 REMARK 3 18 1.6917 - 1.6598 0.98 7126 364 0.2128 0.2408 REMARK 3 19 1.6598 - 1.6301 0.98 7221 400 0.2142 0.2463 REMARK 3 20 1.6301 - 1.6025 0.98 7137 417 0.2137 0.2478 REMARK 3 21 1.6025 - 1.5767 0.98 7104 386 0.2197 0.2366 REMARK 3 22 1.5767 - 1.5524 0.98 7159 365 0.2186 0.2352 REMARK 3 23 1.5524 - 1.5296 0.97 7156 371 0.2201 0.2391 REMARK 3 24 1.5296 - 1.5081 0.97 7095 374 0.2218 0.2367 REMARK 3 25 1.5081 - 1.4877 0.97 7147 391 0.2270 0.2512 REMARK 3 26 1.4877 - 1.4684 0.97 7048 365 0.2310 0.2671 REMARK 3 27 1.4684 - 1.4500 0.97 7113 373 0.2337 0.2649 REMARK 3 28 1.4500 - 1.4326 0.97 7084 363 0.2340 0.2614 REMARK 3 29 1.4326 - 1.4159 0.97 7063 388 0.2355 0.2573 REMARK 3 30 1.4159 - 1.4000 0.97 7121 363 0.2439 0.2606 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.080 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.32 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 9414 REMARK 3 ANGLE : 0.939 12908 REMARK 3 CHIRALITY : 0.033 1400 REMARK 3 PLANARITY : 0.006 1614 REMARK 3 DIHEDRAL : 12.532 3204 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6LCW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1300014566. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-OCT-19 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 6.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSALISPRO REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.2.7 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 227495 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 19.810 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.12900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.30400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6KA9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0% (W/V) PROTEIN SOLUTION THAT REMARK 280 CONTAINS 18% (W/V) PEG3350, 0.15 M DIPOTASSIUM SULFATE, 50 MM REMARK 280 CITRATE-AMMONIUM BUFFER (PH 6.6), MICROBATCH, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 47.20950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -95.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -93.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS D 82 C1 2FU D 501 1.98 REMARK 500 O HOH A 417 O HOH A 468 2.09 REMARK 500 O HOH G 421 O HOH G 451 2.16 REMARK 500 O HOH B 306 O HOH B 311 2.18 REMARK 500 OE1 GLU C 30 O HOH C 301 2.18 REMARK 500 O HOH A 389 O HOH A 468 2.18 REMARK 500 NZ LYS H 82 C1 2FU F 202 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 75 38.26 -150.25 REMARK 500 LYS A 90 -64.72 -127.06 REMARK 500 ASN B 80 58.77 -145.25 REMARK 500 ASP C 75 53.33 -147.12 REMARK 500 LYS C 90 -64.37 -121.36 REMARK 500 ASN D 80 54.88 -149.98 REMARK 500 LYS E 90 -62.28 -122.81 REMARK 500 LEU E 113 78.83 -119.72 REMARK 500 ASN H 80 45.74 -145.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH H 467 DISTANCE = 6.85 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HNI B 201 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 92 NE2 REMARK 620 2 HNI B 201 NA 92.1 REMARK 620 3 HNI B 201 NB 98.4 87.8 REMARK 620 4 HNI B 201 NC 102.7 165.2 89.5 REMARK 620 5 HNI B 201 ND 96.7 89.5 164.8 89.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HNI D 502 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 92 NE2 REMARK 620 2 HNI D 502 NA 84.5 REMARK 620 3 HNI D 502 NB 89.9 90.4 REMARK 620 4 HNI D 502 NC 90.3 174.7 88.7 REMARK 620 5 HNI D 502 ND 86.1 89.2 176.0 91.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HNI F 201 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS F 92 NE2 REMARK 620 2 HNI F 201 NA 91.9 REMARK 620 3 HNI F 201 NB 96.9 88.0 REMARK 620 4 HNI F 201 NC 102.3 165.8 89.4 REMARK 620 5 HNI F 201 ND 98.1 88.9 164.7 90.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HNI H 201 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS H 92 NE2 REMARK 620 2 HNI H 201 NA 90.8 REMARK 620 3 HNI H 201 NB 95.4 89.4 REMARK 620 4 HNI H 201 NC 102.2 167.0 89.1 REMARK 620 5 HNI H 201 ND 98.1 89.2 166.4 89.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HNI A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HNI B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HNI C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HNI D 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HNI E 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HNI F 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HNI G 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HNI H 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide 2FU D 501 and LYS D REMARK 800 82 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide 2FU F 202 and LYS H REMARK 800 82 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide 2FU F 202 and LYS F REMARK 800 82 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6KA9 RELATED DB: PDB REMARK 900 RELATED ID: 6KAE RELATED DB: PDB REMARK 900 RELATED ID: 6KAH RELATED DB: PDB REMARK 900 RELATED ID: 6KAI RELATED DB: PDB REMARK 900 RELATED ID: 6KAO RELATED DB: PDB REMARK 900 RELATED ID: 6KAP RELATED DB: PDB REMARK 900 RELATED ID: 6KAQ RELATED DB: PDB REMARK 900 RELATED ID: 6KAR RELATED DB: PDB REMARK 900 RELATED ID: 6KAS RELATED DB: PDB REMARK 900 RELATED ID: 6KAT RELATED DB: PDB REMARK 900 RELATED ID: 6KAU RELATED DB: PDB REMARK 900 RELATED ID: 6KAV RELATED DB: PDB REMARK 900 RELATED ID: 6L5V RELATED DB: PDB REMARK 900 RELATED ID: 6L5W RELATED DB: PDB REMARK 900 RELATED ID: 6L5X RELATED DB: PDB REMARK 900 RELATED ID: 6L5Y RELATED DB: PDB DBREF 6LCW A 1 141 UNP P69905 HBA_HUMAN 2 142 DBREF 6LCW B 1 146 UNP P68871 HBB_HUMAN 2 147 DBREF 6LCW C 1 141 UNP P69905 HBA_HUMAN 2 142 DBREF 6LCW D 1 146 UNP P68871 HBB_HUMAN 2 147 DBREF 6LCW E 1 141 UNP P69905 HBA_HUMAN 2 142 DBREF 6LCW F 1 146 UNP P68871 HBB_HUMAN 2 147 DBREF 6LCW G 1 141 UNP P69905 HBA_HUMAN 2 142 DBREF 6LCW H 1 146 UNP P68871 HBB_HUMAN 2 147 SEQRES 1 A 141 VAL LEU SER PRO ALA ASP LYS THR ASN VAL LYS ALA ALA SEQRES 2 A 141 TRP GLY LYS VAL GLY ALA HIS ALA GLY GLU TYR GLY ALA SEQRES 3 A 141 GLU ALA LEU GLU ARG MET PHE LEU SER PHE PRO THR THR SEQRES 4 A 141 LYS THR TYR PHE PRO HIS PHE ASP LEU SER HIS GLY SER SEQRES 5 A 141 ALA GLN VAL LYS GLY HIS GLY LYS LYS VAL ALA ASP ALA SEQRES 6 A 141 LEU THR ASN ALA VAL ALA HIS VAL ASP ASP MET PRO ASN SEQRES 7 A 141 ALA LEU SER ALA LEU SER ASP LEU HIS ALA HIS LYS LEU SEQRES 8 A 141 ARG VAL ASP PRO VAL ASN PHE LYS LEU LEU SER HIS CYS SEQRES 9 A 141 LEU LEU VAL THR LEU ALA ALA HIS LEU PRO ALA GLU PHE SEQRES 10 A 141 THR PRO ALA VAL HIS ALA SER LEU ASP LYS PHE LEU ALA SEQRES 11 A 141 SER VAL SER THR VAL LEU THR SER LYS TYR ARG SEQRES 1 B 146 VAL HIS LEU THR PRO GLU GLU LYS SER ALA VAL THR ALA SEQRES 2 B 146 LEU TRP GLY LYS VAL ASN VAL ASP GLU VAL GLY GLY GLU SEQRES 3 B 146 ALA LEU GLY ARG LEU LEU VAL VAL TYR PRO TRP THR GLN SEQRES 4 B 146 ARG PHE PHE GLU SER PHE GLY ASP LEU SER THR PRO ASP SEQRES 5 B 146 ALA VAL MET GLY ASN PRO LYS VAL LYS ALA HIS GLY LYS SEQRES 6 B 146 LYS VAL LEU GLY ALA PHE SER ASP GLY LEU ALA HIS LEU SEQRES 7 B 146 ASP ASN LEU LYS GLY THR PHE ALA THR LEU SER GLU LEU SEQRES 8 B 146 HIS CYS ASP LYS LEU HIS VAL ASP PRO GLU ASN PHE ARG SEQRES 9 B 146 LEU LEU GLY ASN VAL LEU VAL CYS VAL LEU ALA HIS HIS SEQRES 10 B 146 PHE GLY LYS GLU PHE THR PRO PRO VAL GLN ALA ALA TYR SEQRES 11 B 146 GLN LYS VAL VAL ALA GLY VAL ALA ASN ALA LEU ALA HIS SEQRES 12 B 146 LYS TYR HIS SEQRES 1 C 141 VAL LEU SER PRO ALA ASP LYS THR ASN VAL LYS ALA ALA SEQRES 2 C 141 TRP GLY LYS VAL GLY ALA HIS ALA GLY GLU TYR GLY ALA SEQRES 3 C 141 GLU ALA LEU GLU ARG MET PHE LEU SER PHE PRO THR THR SEQRES 4 C 141 LYS THR TYR PHE PRO HIS PHE ASP LEU SER HIS GLY SER SEQRES 5 C 141 ALA GLN VAL LYS GLY HIS GLY LYS LYS VAL ALA ASP ALA SEQRES 6 C 141 LEU THR ASN ALA VAL ALA HIS VAL ASP ASP MET PRO ASN SEQRES 7 C 141 ALA LEU SER ALA LEU SER ASP LEU HIS ALA HIS LYS LEU SEQRES 8 C 141 ARG VAL ASP PRO VAL ASN PHE LYS LEU LEU SER HIS CYS SEQRES 9 C 141 LEU LEU VAL THR LEU ALA ALA HIS LEU PRO ALA GLU PHE SEQRES 10 C 141 THR PRO ALA VAL HIS ALA SER LEU ASP LYS PHE LEU ALA SEQRES 11 C 141 SER VAL SER THR VAL LEU THR SER LYS TYR ARG SEQRES 1 D 146 VAL HIS LEU THR PRO GLU GLU LYS SER ALA VAL THR ALA SEQRES 2 D 146 LEU TRP GLY LYS VAL ASN VAL ASP GLU VAL GLY GLY GLU SEQRES 3 D 146 ALA LEU GLY ARG LEU LEU VAL VAL TYR PRO TRP THR GLN SEQRES 4 D 146 ARG PHE PHE GLU SER PHE GLY ASP LEU SER THR PRO ASP SEQRES 5 D 146 ALA VAL MET GLY ASN PRO LYS VAL LYS ALA HIS GLY LYS SEQRES 6 D 146 LYS VAL LEU GLY ALA PHE SER ASP GLY LEU ALA HIS LEU SEQRES 7 D 146 ASP ASN LEU LYS GLY THR PHE ALA THR LEU SER GLU LEU SEQRES 8 D 146 HIS CYS ASP LYS LEU HIS VAL ASP PRO GLU ASN PHE ARG SEQRES 9 D 146 LEU LEU GLY ASN VAL LEU VAL CYS VAL LEU ALA HIS HIS SEQRES 10 D 146 PHE GLY LYS GLU PHE THR PRO PRO VAL GLN ALA ALA TYR SEQRES 11 D 146 GLN LYS VAL VAL ALA GLY VAL ALA ASN ALA LEU ALA HIS SEQRES 12 D 146 LYS TYR HIS SEQRES 1 E 141 VAL LEU SER PRO ALA ASP LYS THR ASN VAL LYS ALA ALA SEQRES 2 E 141 TRP GLY LYS VAL GLY ALA HIS ALA GLY GLU TYR GLY ALA SEQRES 3 E 141 GLU ALA LEU GLU ARG MET PHE LEU SER PHE PRO THR THR SEQRES 4 E 141 LYS THR TYR PHE PRO HIS PHE ASP LEU SER HIS GLY SER SEQRES 5 E 141 ALA GLN VAL LYS GLY HIS GLY LYS LYS VAL ALA ASP ALA SEQRES 6 E 141 LEU THR ASN ALA VAL ALA HIS VAL ASP ASP MET PRO ASN SEQRES 7 E 141 ALA LEU SER ALA LEU SER ASP LEU HIS ALA HIS LYS LEU SEQRES 8 E 141 ARG VAL ASP PRO VAL ASN PHE LYS LEU LEU SER HIS CYS SEQRES 9 E 141 LEU LEU VAL THR LEU ALA ALA HIS LEU PRO ALA GLU PHE SEQRES 10 E 141 THR PRO ALA VAL HIS ALA SER LEU ASP LYS PHE LEU ALA SEQRES 11 E 141 SER VAL SER THR VAL LEU THR SER LYS TYR ARG SEQRES 1 F 146 VAL HIS LEU THR PRO GLU GLU LYS SER ALA VAL THR ALA SEQRES 2 F 146 LEU TRP GLY LYS VAL ASN VAL ASP GLU VAL GLY GLY GLU SEQRES 3 F 146 ALA LEU GLY ARG LEU LEU VAL VAL TYR PRO TRP THR GLN SEQRES 4 F 146 ARG PHE PHE GLU SER PHE GLY ASP LEU SER THR PRO ASP SEQRES 5 F 146 ALA VAL MET GLY ASN PRO LYS VAL LYS ALA HIS GLY LYS SEQRES 6 F 146 LYS VAL LEU GLY ALA PHE SER ASP GLY LEU ALA HIS LEU SEQRES 7 F 146 ASP ASN LEU LYS GLY THR PHE ALA THR LEU SER GLU LEU SEQRES 8 F 146 HIS CYS ASP LYS LEU HIS VAL ASP PRO GLU ASN PHE ARG SEQRES 9 F 146 LEU LEU GLY ASN VAL LEU VAL CYS VAL LEU ALA HIS HIS SEQRES 10 F 146 PHE GLY LYS GLU PHE THR PRO PRO VAL GLN ALA ALA TYR SEQRES 11 F 146 GLN LYS VAL VAL ALA GLY VAL ALA ASN ALA LEU ALA HIS SEQRES 12 F 146 LYS TYR HIS SEQRES 1 G 141 VAL LEU SER PRO ALA ASP LYS THR ASN VAL LYS ALA ALA SEQRES 2 G 141 TRP GLY LYS VAL GLY ALA HIS ALA GLY GLU TYR GLY ALA SEQRES 3 G 141 GLU ALA LEU GLU ARG MET PHE LEU SER PHE PRO THR THR SEQRES 4 G 141 LYS THR TYR PHE PRO HIS PHE ASP LEU SER HIS GLY SER SEQRES 5 G 141 ALA GLN VAL LYS GLY HIS GLY LYS LYS VAL ALA ASP ALA SEQRES 6 G 141 LEU THR ASN ALA VAL ALA HIS VAL ASP ASP MET PRO ASN SEQRES 7 G 141 ALA LEU SER ALA LEU SER ASP LEU HIS ALA HIS LYS LEU SEQRES 8 G 141 ARG VAL ASP PRO VAL ASN PHE LYS LEU LEU SER HIS CYS SEQRES 9 G 141 LEU LEU VAL THR LEU ALA ALA HIS LEU PRO ALA GLU PHE SEQRES 10 G 141 THR PRO ALA VAL HIS ALA SER LEU ASP LYS PHE LEU ALA SEQRES 11 G 141 SER VAL SER THR VAL LEU THR SER LYS TYR ARG SEQRES 1 H 146 VAL HIS LEU THR PRO GLU GLU LYS SER ALA VAL THR ALA SEQRES 2 H 146 LEU TRP GLY LYS VAL ASN VAL ASP GLU VAL GLY GLY GLU SEQRES 3 H 146 ALA LEU GLY ARG LEU LEU VAL VAL TYR PRO TRP THR GLN SEQRES 4 H 146 ARG PHE PHE GLU SER PHE GLY ASP LEU SER THR PRO ASP SEQRES 5 H 146 ALA VAL MET GLY ASN PRO LYS VAL LYS ALA HIS GLY LYS SEQRES 6 H 146 LYS VAL LEU GLY ALA PHE SER ASP GLY LEU ALA HIS LEU SEQRES 7 H 146 ASP ASN LEU LYS GLY THR PHE ALA THR LEU SER GLU LEU SEQRES 8 H 146 HIS CYS ASP LYS LEU HIS VAL ASP PRO GLU ASN PHE ARG SEQRES 9 H 146 LEU LEU GLY ASN VAL LEU VAL CYS VAL LEU ALA HIS HIS SEQRES 10 H 146 PHE GLY LYS GLU PHE THR PRO PRO VAL GLN ALA ALA TYR SEQRES 11 H 146 GLN LYS VAL VAL ALA GLY VAL ALA ASN ALA LEU ALA HIS SEQRES 12 H 146 LYS TYR HIS HET HNI A 201 43 HET HNI B 201 43 HET HNI C 201 43 HET 2FU D 501 6 HET HNI D 502 43 HET HNI E 201 43 HET HNI F 201 43 HET 2FU F 202 6 HET HNI G 201 43 HET HNI H 201 43 HETNAM HNI PROTOPORPHYRIN IX CONTAINING NI(II) HETNAM 2FU BUT-2-ENEDIAL FORMUL 9 HNI 8(C34 H32 N4 NI O4) FORMUL 12 2FU 2(C4 H4 O2) FORMUL 19 HOH *1321(H2 O) HELIX 1 AA1 SER A 3 GLY A 18 1 16 HELIX 2 AA2 HIS A 20 PHE A 36 1 17 HELIX 3 AA3 PRO A 37 PHE A 43 5 7 HELIX 4 AA4 SER A 52 HIS A 72 1 21 HELIX 5 AA5 ASP A 75 LEU A 80 1 6 HELIX 6 AA6 LEU A 80 LYS A 90 1 11 HELIX 7 AA7 PRO A 95 LEU A 113 1 19 HELIX 8 AA8 THR A 118 THR A 137 1 20 HELIX 9 AA9 THR B 4 GLY B 16 1 13 HELIX 10 AB1 ASN B 19 TYR B 35 1 17 HELIX 11 AB2 PRO B 36 GLY B 46 5 11 HELIX 12 AB3 THR B 50 GLY B 56 1 7 HELIX 13 AB4 ASN B 57 LEU B 75 1 19 HELIX 14 AB5 ALA B 76 LEU B 78 5 3 HELIX 15 AB6 ASN B 80 PHE B 85 1 6 HELIX 16 AB7 PHE B 85 LYS B 95 1 11 HELIX 17 AB8 PRO B 100 GLY B 119 1 20 HELIX 18 AB9 LYS B 120 PHE B 122 5 3 HELIX 19 AC1 THR B 123 HIS B 143 1 21 HELIX 20 AC2 SER C 3 GLY C 18 1 16 HELIX 21 AC3 HIS C 20 PHE C 36 1 17 HELIX 22 AC4 PRO C 37 PHE C 43 5 7 HELIX 23 AC5 SER C 52 HIS C 72 1 21 HELIX 24 AC6 ASP C 75 LEU C 80 1 6 HELIX 25 AC7 LEU C 80 LYS C 90 1 11 HELIX 26 AC8 PRO C 95 LEU C 113 1 19 HELIX 27 AC9 THR C 118 SER C 138 1 21 HELIX 28 AD1 THR D 4 GLY D 16 1 13 HELIX 29 AD2 ASN D 19 TYR D 35 1 17 HELIX 30 AD3 PRO D 36 GLY D 46 5 11 HELIX 31 AD4 THR D 50 GLY D 56 1 7 HELIX 32 AD5 ASN D 57 LEU D 75 1 19 HELIX 33 AD6 ASN D 80 PHE D 85 1 6 HELIX 34 AD7 PHE D 85 LYS D 95 1 11 HELIX 35 AD8 PRO D 100 GLY D 119 1 20 HELIX 36 AD9 LYS D 120 PHE D 122 5 3 HELIX 37 AE1 THR D 123 HIS D 143 1 21 HELIX 38 AE2 SER E 3 GLY E 18 1 16 HELIX 39 AE3 HIS E 20 PHE E 36 1 17 HELIX 40 AE4 PRO E 37 PHE E 43 5 7 HELIX 41 AE5 SER E 52 HIS E 72 1 21 HELIX 42 AE6 ASP E 75 LEU E 80 1 6 HELIX 43 AE7 LEU E 80 LYS E 90 1 11 HELIX 44 AE8 PRO E 95 LEU E 113 1 19 HELIX 45 AE9 THR E 118 THR E 137 1 20 HELIX 46 AF1 THR F 4 GLY F 16 1 13 HELIX 47 AF2 ASN F 19 TYR F 35 1 17 HELIX 48 AF3 PRO F 36 GLY F 46 5 11 HELIX 49 AF4 THR F 50 GLY F 56 1 7 HELIX 50 AF5 ASN F 57 LEU F 75 1 19 HELIX 51 AF6 ASN F 80 PHE F 85 1 6 HELIX 52 AF7 PHE F 85 LYS F 95 1 11 HELIX 53 AF8 PRO F 100 GLY F 119 1 20 HELIX 54 AF9 LYS F 120 PHE F 122 5 3 HELIX 55 AG1 THR F 123 HIS F 143 1 21 HELIX 56 AG2 SER G 3 GLY G 18 1 16 HELIX 57 AG3 HIS G 20 PHE G 36 1 17 HELIX 58 AG4 PRO G 37 PHE G 43 5 7 HELIX 59 AG5 SER G 52 HIS G 72 1 21 HELIX 60 AG6 ASP G 75 LEU G 80 1 6 HELIX 61 AG7 LEU G 80 LYS G 90 1 11 HELIX 62 AG8 PRO G 95 LEU G 113 1 19 HELIX 63 AG9 THR G 118 THR G 137 1 20 HELIX 64 AH1 THR H 4 GLY H 16 1 13 HELIX 65 AH2 ASN H 19 TYR H 35 1 17 HELIX 66 AH3 PRO H 36 GLY H 46 5 11 HELIX 67 AH4 THR H 50 ASN H 57 1 8 HELIX 68 AH5 ASN H 57 LEU H 75 1 19 HELIX 69 AH6 ASN H 80 PHE H 85 1 6 HELIX 70 AH7 PHE H 85 LYS H 95 1 11 HELIX 71 AH8 PRO H 100 GLY H 119 1 20 HELIX 72 AH9 LYS H 120 PHE H 122 5 3 HELIX 73 AI1 THR H 123 HIS H 143 1 21 LINK NZ LYS B 82 C7 2FU D 501 1555 1555 1.44 LINK NZ LYS D 82 C2 2FU D 501 1555 1555 1.44 LINK NZ LYS F 82 C7 2FU F 202 1555 1555 1.41 LINK C2 2FU F 202 NZ LYS H 82 1555 1555 1.47 LINK NE2 HIS B 92 NI HNI B 201 1555 1555 2.18 LINK NE2 HIS D 92 NI HNI D 502 1555 1555 2.52 LINK NE2 HIS F 92 NI HNI F 201 1555 1555 2.18 LINK NE2 HIS H 92 NI HNI H 201 1555 1555 2.23 SITE 1 AC1 18 TYR A 42 PHE A 43 HIS A 45 PHE A 46 SITE 2 AC1 18 HIS A 58 LYS A 61 LEU A 83 LEU A 86 SITE 3 AC1 18 HIS A 87 LEU A 91 VAL A 93 ASN A 97 SITE 4 AC1 18 PHE A 98 LEU A 101 LEU A 136 HOH A 303 SITE 5 AC1 18 HOH A 308 HOH A 398 SITE 1 AC2 17 HIS B 63 LYS B 66 VAL B 67 ALA B 70 SITE 2 AC2 17 LEU B 88 LEU B 91 HIS B 92 LEU B 96 SITE 3 AC2 17 ASN B 102 PHE B 103 LEU B 141 HOH B 325 SITE 4 AC2 17 HOH B 344 HOH B 350 HOH B 362 HOH B 367 SITE 5 AC2 17 HOH B 396 SITE 1 AC3 19 TYR C 42 PHE C 43 HIS C 45 PHE C 46 SITE 2 AC3 19 HIS C 58 LYS C 61 LEU C 83 LEU C 86 SITE 3 AC3 19 HIS C 87 LEU C 91 VAL C 93 ASN C 97 SITE 4 AC3 19 PHE C 98 LEU C 101 LEU C 136 HOH C 314 SITE 5 AC3 19 HOH C 361 HOH C 363 HOH C 379 SITE 1 AC4 10 HIS D 63 LYS D 66 VAL D 67 LEU D 91 SITE 2 AC4 10 HIS D 92 LEU D 96 ASN D 102 PHE D 103 SITE 3 AC4 10 VAL D 137 LEU D 141 SITE 1 AC5 19 ALA C 19 TYR E 42 PHE E 43 HIS E 45 SITE 2 AC5 19 HIS E 58 LYS E 61 LEU E 86 HIS E 87 SITE 3 AC5 19 LEU E 91 VAL E 93 ASN E 97 PHE E 98 SITE 4 AC5 19 LEU E 101 LEU E 136 HOH E 303 HOH E 326 SITE 5 AC5 19 HOH E 351 HOH E 377 HOH E 405 SITE 1 AC6 11 HIS F 63 LYS F 66 VAL F 67 LEU F 88 SITE 2 AC6 11 LEU F 91 HIS F 92 LEU F 96 ASN F 102 SITE 3 AC6 11 PHE F 103 LEU F 141 HOH F 301 SITE 1 AC7 18 GLY A 18 TYR G 42 PHE G 43 HIS G 45 SITE 2 AC7 18 HIS G 58 LYS G 61 LEU G 86 HIS G 87 SITE 3 AC7 18 LEU G 91 VAL G 93 ASN G 97 PHE G 98 SITE 4 AC7 18 LEU G 101 LEU G 136 HOH G 314 HOH G 318 SITE 5 AC7 18 HOH G 370 HOH G 373 SITE 1 AC8 10 HIS H 63 LYS H 66 VAL H 67 LEU H 91 SITE 2 AC8 10 HIS H 92 LEU H 96 ASN H 102 PHE H 103 SITE 3 AC8 10 LEU H 141 HOH H 402 SITE 1 AC9 12 LYS B 82 ASN D 80 LEU D 81 GLY D 83 SITE 2 AC9 12 THR D 84 PHE D 85 ALA D 86 HIS D 143 SITE 3 AC9 12 LYS D 144 HOH D 613 HOH D 644 HOH D 685 SITE 1 AD1 17 ASN F 80 LEU F 81 GLY F 83 THR F 84 SITE 2 AD1 17 PHE F 85 ALA F 86 HOH F 341 HOH F 414 SITE 3 AD1 17 VAL H 1 ASN H 80 LEU H 81 GLY H 83 SITE 4 AD1 17 THR H 84 PHE H 85 ALA H 86 HOH H 336 SITE 5 AD1 17 HOH H 379 SITE 1 AD2 10 ASN F 80 LEU F 81 GLY F 83 THR F 84 SITE 2 AD2 10 PHE F 85 ALA F 86 HOH F 341 HOH F 414 SITE 3 AD2 10 VAL H 1 LYS H 82 CRYST1 64.771 94.419 100.430 90.00 102.06 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015439 0.000000 0.003300 0.00000 SCALE2 0.000000 0.010591 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010182 0.00000