HEADER HYDROLASE 25-NOV-19 6LED TITLE STRUCTURE OF D-CARBAMOYLASE MUTANT FROM NITRATIREDUCTOR INDICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-CARBAMOYL-D-AMINO-ACID HYDROLASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NITRATIREDUCTOR INDICUS C115; SOURCE 3 ORGANISM_TAXID: 1231190; SOURCE 4 GENE: NA8A_19058; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS CARBAMOYLASE, HYDANTOINSE PROCESS, D-AMINO ACID, BIOSYNTHETIC KEYWDS 2 PROTEIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.NI,Y.F.LIU,G.C.XU REVDAT 3 22-NOV-23 6LED 1 REMARK REVDAT 2 12-MAY-21 6LED 1 JRNL REVDAT 1 28-OCT-20 6LED 0 JRNL AUTH Y.LIU,G.XU,J.ZHOU,J.NI,L.ZHANG,X.HOU,D.YIN,Y.RAO,Y.L.ZHAO, JRNL AUTH 2 Y.NI JRNL TITL STRUCTURE-GUIDED ENGINEERING OF D-CARBAMOYLASE REVEALS A KEY JRNL TITL 2 LOOP AT SUBSTRATE ENTRANCE TUNNEL JRNL REF ACS CATALYSIS V. 10 12393 2020 JRNL REFN ESSN 2155-5435 JRNL DOI 10.1021/ACSCATAL.0C02942 REMARK 2 REMARK 2 RESOLUTION. 2.37 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17_3644 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.37 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 27275 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.910 REMARK 3 FREE R VALUE TEST SET COUNT : 1340 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.8300 - 5.1000 1.00 2851 132 0.1848 0.2214 REMARK 3 2 5.0900 - 4.0500 1.00 2644 156 0.1358 0.1806 REMARK 3 3 4.0500 - 3.5300 1.00 2601 140 0.1448 0.1665 REMARK 3 4 3.5300 - 3.2100 1.00 2603 119 0.1659 0.2246 REMARK 3 5 3.2100 - 2.9800 1.00 2570 136 0.1779 0.2378 REMARK 3 6 2.9800 - 2.8100 1.00 2540 133 0.1797 0.2384 REMARK 3 7 2.8100 - 2.6700 1.00 2572 114 0.1880 0.2750 REMARK 3 8 2.6700 - 2.5500 1.00 2512 145 0.1901 0.2552 REMARK 3 9 2.5500 - 2.4500 1.00 2537 129 0.1851 0.2355 REMARK 3 10 2.4500 - 2.3700 1.00 2505 136 0.1955 0.2544 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.236 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.142 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.62 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 5016 REMARK 3 ANGLE : 0.510 6781 REMARK 3 CHIRALITY : 0.045 721 REMARK 3 PLANARITY : 0.004 895 REMARK 3 DIHEDRAL : 22.717 1878 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.6177 20.0873 -1.2090 REMARK 3 T TENSOR REMARK 3 T11: 0.1947 T22: 0.1920 REMARK 3 T33: 0.1315 T12: 0.0577 REMARK 3 T13: -0.0456 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 2.0864 L22: 4.0656 REMARK 3 L33: 1.6608 L12: 1.0544 REMARK 3 L13: 1.6329 L23: -0.3333 REMARK 3 S TENSOR REMARK 3 S11: 0.0414 S12: -0.4997 S13: 0.1608 REMARK 3 S21: 0.2468 S22: 0.0380 S23: -0.1562 REMARK 3 S31: -0.0088 S32: 0.3686 S33: -0.0029 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 21 THROUGH 87 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.7013 12.5688 -5.1423 REMARK 3 T TENSOR REMARK 3 T11: 0.1701 T22: 0.2149 REMARK 3 T33: 0.2918 T12: 0.0402 REMARK 3 T13: -0.0371 T23: -0.0549 REMARK 3 L TENSOR REMARK 3 L11: 2.4546 L22: 2.4894 REMARK 3 L33: 2.9889 L12: -0.2327 REMARK 3 L13: -0.3630 L23: -0.5676 REMARK 3 S TENSOR REMARK 3 S11: -0.0202 S12: -0.0524 S13: -0.2889 REMARK 3 S21: 0.0458 S22: 0.1395 S23: -0.3506 REMARK 3 S31: 0.1817 S32: 0.3571 S33: -0.1412 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 88 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.3173 5.9142 -10.2745 REMARK 3 T TENSOR REMARK 3 T11: 0.2729 T22: 0.2382 REMARK 3 T33: 0.3345 T12: 0.0528 REMARK 3 T13: -0.0802 T23: -0.0695 REMARK 3 L TENSOR REMARK 3 L11: 3.5897 L22: 2.0091 REMARK 3 L33: 7.4181 L12: -0.3113 REMARK 3 L13: -2.1868 L23: 0.5942 REMARK 3 S TENSOR REMARK 3 S11: 0.0674 S12: 0.4076 S13: -0.5802 REMARK 3 S21: -0.0042 S22: 0.2973 S23: -0.0924 REMARK 3 S31: 0.9112 S32: 0.2430 S33: -0.1518 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 115 THROUGH 266 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.5240 20.5079 -11.8478 REMARK 3 T TENSOR REMARK 3 T11: 0.1461 T22: 0.1638 REMARK 3 T33: 0.1512 T12: 0.0108 REMARK 3 T13: -0.0026 T23: -0.0155 REMARK 3 L TENSOR REMARK 3 L11: 1.4464 L22: 2.3221 REMARK 3 L33: 1.0296 L12: 0.0465 REMARK 3 L13: 0.0976 L23: 0.3189 REMARK 3 S TENSOR REMARK 3 S11: 0.0144 S12: 0.1860 S13: -0.0770 REMARK 3 S21: -0.1009 S22: 0.0592 S23: -0.0648 REMARK 3 S31: 0.0150 S32: 0.0285 S33: -0.0586 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 267 THROUGH 284 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.8325 23.8799 4.7314 REMARK 3 T TENSOR REMARK 3 T11: 0.3548 T22: 0.3040 REMARK 3 T33: 0.2441 T12: 0.0390 REMARK 3 T13: 0.0824 T23: -0.0536 REMARK 3 L TENSOR REMARK 3 L11: 7.1189 L22: 4.3706 REMARK 3 L33: 5.4898 L12: 1.2798 REMARK 3 L13: 0.3889 L23: -0.2722 REMARK 3 S TENSOR REMARK 3 S11: 0.2140 S12: -1.4449 S13: 0.2254 REMARK 3 S21: 0.5264 S22: -0.0006 S23: 0.6249 REMARK 3 S31: 0.1214 S32: -0.6981 S33: -0.2290 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 285 THROUGH 307 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.9307 17.8847 -16.7988 REMARK 3 T TENSOR REMARK 3 T11: 0.2384 T22: 0.4142 REMARK 3 T33: 0.5091 T12: -0.0218 REMARK 3 T13: 0.0071 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 2.8340 L22: 5.9087 REMARK 3 L33: 8.8581 L12: -1.1405 REMARK 3 L13: -4.4732 L23: -1.0387 REMARK 3 S TENSOR REMARK 3 S11: 0.0367 S12: -0.4958 S13: -0.2899 REMARK 3 S21: 0.2181 S22: 0.4423 S23: 0.8283 REMARK 3 S31: 0.0185 S32: 0.3602 S33: -0.4035 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.2833 43.0806 -19.6353 REMARK 3 T TENSOR REMARK 3 T11: 0.1841 T22: 0.3294 REMARK 3 T33: 0.2627 T12: 0.0942 REMARK 3 T13: 0.0058 T23: 0.0456 REMARK 3 L TENSOR REMARK 3 L11: 1.6751 L22: 2.2313 REMARK 3 L33: 2.0213 L12: -0.1689 REMARK 3 L13: -0.3377 L23: 0.0308 REMARK 3 S TENSOR REMARK 3 S11: 0.1720 S12: 0.1537 S13: 0.1182 REMARK 3 S21: -0.1497 S22: -0.0464 S23: 0.4210 REMARK 3 S31: -0.0950 S32: -0.3605 S33: -0.0910 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 75 THROUGH 208 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.6113 32.1233 -19.9953 REMARK 3 T TENSOR REMARK 3 T11: 0.1605 T22: 0.2928 REMARK 3 T33: 0.2448 T12: 0.0469 REMARK 3 T13: -0.0224 T23: -0.0052 REMARK 3 L TENSOR REMARK 3 L11: 2.6728 L22: 2.1596 REMARK 3 L33: 2.2909 L12: -0.3381 REMARK 3 L13: -0.5943 L23: -0.2183 REMARK 3 S TENSOR REMARK 3 S11: 0.1263 S12: 0.2811 S13: -0.2471 REMARK 3 S21: -0.0623 S22: -0.1408 S23: 0.3938 REMARK 3 S31: 0.0622 S32: -0.4057 S33: -0.0269 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 209 THROUGH 251 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.0905 37.8994 -12.6733 REMARK 3 T TENSOR REMARK 3 T11: 0.1600 T22: 0.1812 REMARK 3 T33: 0.1745 T12: 0.0337 REMARK 3 T13: 0.0122 T23: 0.0369 REMARK 3 L TENSOR REMARK 3 L11: 3.8811 L22: 2.3660 REMARK 3 L33: 1.0303 L12: -1.7458 REMARK 3 L13: -1.3921 L23: 1.3314 REMARK 3 S TENSOR REMARK 3 S11: 0.0818 S12: 0.1288 S13: 0.0518 REMARK 3 S21: 0.1251 S22: -0.1447 S23: 0.0525 REMARK 3 S31: 0.0558 S32: -0.2667 S33: 0.0307 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 252 THROUGH 307 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.7278 28.7829 -21.1696 REMARK 3 T TENSOR REMARK 3 T11: 0.1532 T22: 0.2124 REMARK 3 T33: 0.2007 T12: 0.0139 REMARK 3 T13: -0.0395 T23: -0.0198 REMARK 3 L TENSOR REMARK 3 L11: 1.9147 L22: 5.3583 REMARK 3 L33: 0.7982 L12: -1.8755 REMARK 3 L13: 0.0422 L23: 0.0156 REMARK 3 S TENSOR REMARK 3 S11: 0.2228 S12: 0.3130 S13: -0.0901 REMARK 3 S21: -0.1995 S22: -0.1078 S23: -0.2124 REMARK 3 S31: 0.0964 S32: 0.0257 S33: -0.1291 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6LED COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1300014631. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-NOV-19 REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER SMART 6000 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27278 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.370 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 20.80 REMARK 200 R MERGE (I) : 0.12600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 37.1700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.37 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 18.10 REMARK 200 R MERGE FOR SHELL (I) : 0.62600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 1FO6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, SODIUM PHOSPHATE, SODIUM REMARK 280 CHLORIDE, PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 82.48100 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 164.96200 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 123.72150 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 206.20250 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 41.24050 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 82.48100 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 164.96200 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 206.20250 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 123.72150 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 41.24050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 102 REMARK 465 GLY A 103 REMARK 465 SER B 202 REMARK 465 LEU B 203 REMARK 465 SER B 204 REMARK 465 GLY B 205 REMARK 465 GLU B 206 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 3 48.87 -96.29 REMARK 500 ASN A 74 -167.17 -120.76 REMARK 500 LEU A 144 47.29 -101.45 REMARK 500 CYS A 171 -108.80 50.30 REMARK 500 HIS A 284 -74.78 -71.86 REMARK 500 ASN B 74 -166.57 -127.58 REMARK 500 ASP B 102 56.47 34.38 REMARK 500 LEU B 144 45.86 -96.16 REMARK 500 CYS B 171 -119.01 51.92 REMARK 500 HIS B 284 -89.62 -128.10 REMARK 500 ASN B 287 99.78 -69.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6LE2 RELATED DB: PDB REMARK 900 FOUR MUTANT REMARK 900 RELATED ID: 6LCG RELATED DB: PDB REMARK 900 THREE MUTANT DBREF 6LED A 1 307 UNP K2NMS4 K2NMS4_9RHIZ 1 307 DBREF 6LED B 1 307 UNP K2NMS4 K2NMS4_9RHIZ 1 307 SEQADV 6LED GLY A 211 UNP K2NMS4 ARG 211 ENGINEERED MUTATION SEQADV 6LED GLY B 211 UNP K2NMS4 ARG 211 ENGINEERED MUTATION SEQRES 1 A 307 MET THR ARG ARG ILE ARG ILE GLY GLY ALA GLN MET GLY SEQRES 2 A 307 ALA ILE SER ARG SER ASP SER LYS LYS GLU ILE VAL ASP SEQRES 3 A 307 ARG LEU ILE ALA LEU LEU ARG GLN ALA SER GLU LYS GLY SEQRES 4 A 307 CYS GLU LEU VAL VAL PHE PRO GLU LEU ALA LEU SER THR SEQRES 5 A 307 PHE PHE PRO ARG TRP TYR ALA GLU ARG ASP GLY MET ASP SEQRES 6 A 307 GLY TYR PHE GLU ASP GLY MET PRO ASN ALA ALA THR LEU SEQRES 7 A 307 PRO LEU PHE GLU GLU ALA ARG ARG LEU GLY ILE GLY PHE SEQRES 8 A 307 SER LEU GLY TYR ALA GLU LEU VAL GLN GLU ASP GLY ARG SEQRES 9 A 307 VAL ARG ARG PHE ASN THR THR VAL LEU VAL GLU ARG ASN SEQRES 10 A 307 GLY GLU ILE VAL GLY LYS TYR ARG LYS ILE HIS LEU PRO SEQRES 11 A 307 GLY HIS ALA GLU TYR GLU PRO GLU ARG SER HIS GLN HIS SEQRES 12 A 307 LEU GLU LYS ARG TYR PHE GLU VAL GLY ASN THR GLY PHE SEQRES 13 A 307 GLN VAL TRP ASP ALA PHE GLY GLY ARG VAL GLY MET ALA SEQRES 14 A 307 ILE CYS ASN ASP ARG ARG TRP VAL GLU THR TYR ARG VAL SEQRES 15 A 307 MET GLY LEU GLN ASP VAL GLU LEU ILE LEU ILE GLY TYR SEQRES 16 A 307 ASN THR PRO VAL ALA ASP SER LEU SER GLY GLU SER GLU SEQRES 17 A 307 THR LEU GLY MET PHE HIS ASN HIS LEU THR MET GLN ALA SEQRES 18 A 307 GLY ALA TYR GLN ASN SER THR TRP VAL VAL GLY VAL ALA SEQRES 19 A 307 LYS ALA GLY VAL GLU ASP GLY HIS ARG LEU MET GLY GLY SEQRES 20 A 307 SER VAL ILE VAL ALA PRO THR GLY GLU ILE VAL ALA GLN SEQRES 21 A 307 ALA MET THR GLU GLY ASP GLU LEU ILE VAL ALA ASP CYS SEQRES 22 A 307 ASP LEU ASP ARG CYS ARG TYR TYR LYS SER HIS ILE PHE SEQRES 23 A 307 ASN PHE ALA ALA HIS ARG ARG PRO GLU PHE TYR GLN ARG SEQRES 24 A 307 ILE THR SER GLN THR GLY VAL GLU SEQRES 1 B 307 MET THR ARG ARG ILE ARG ILE GLY GLY ALA GLN MET GLY SEQRES 2 B 307 ALA ILE SER ARG SER ASP SER LYS LYS GLU ILE VAL ASP SEQRES 3 B 307 ARG LEU ILE ALA LEU LEU ARG GLN ALA SER GLU LYS GLY SEQRES 4 B 307 CYS GLU LEU VAL VAL PHE PRO GLU LEU ALA LEU SER THR SEQRES 5 B 307 PHE PHE PRO ARG TRP TYR ALA GLU ARG ASP GLY MET ASP SEQRES 6 B 307 GLY TYR PHE GLU ASP GLY MET PRO ASN ALA ALA THR LEU SEQRES 7 B 307 PRO LEU PHE GLU GLU ALA ARG ARG LEU GLY ILE GLY PHE SEQRES 8 B 307 SER LEU GLY TYR ALA GLU LEU VAL GLN GLU ASP GLY ARG SEQRES 9 B 307 VAL ARG ARG PHE ASN THR THR VAL LEU VAL GLU ARG ASN SEQRES 10 B 307 GLY GLU ILE VAL GLY LYS TYR ARG LYS ILE HIS LEU PRO SEQRES 11 B 307 GLY HIS ALA GLU TYR GLU PRO GLU ARG SER HIS GLN HIS SEQRES 12 B 307 LEU GLU LYS ARG TYR PHE GLU VAL GLY ASN THR GLY PHE SEQRES 13 B 307 GLN VAL TRP ASP ALA PHE GLY GLY ARG VAL GLY MET ALA SEQRES 14 B 307 ILE CYS ASN ASP ARG ARG TRP VAL GLU THR TYR ARG VAL SEQRES 15 B 307 MET GLY LEU GLN ASP VAL GLU LEU ILE LEU ILE GLY TYR SEQRES 16 B 307 ASN THR PRO VAL ALA ASP SER LEU SER GLY GLU SER GLU SEQRES 17 B 307 THR LEU GLY MET PHE HIS ASN HIS LEU THR MET GLN ALA SEQRES 18 B 307 GLY ALA TYR GLN ASN SER THR TRP VAL VAL GLY VAL ALA SEQRES 19 B 307 LYS ALA GLY VAL GLU ASP GLY HIS ARG LEU MET GLY GLY SEQRES 20 B 307 SER VAL ILE VAL ALA PRO THR GLY GLU ILE VAL ALA GLN SEQRES 21 B 307 ALA MET THR GLU GLY ASP GLU LEU ILE VAL ALA ASP CYS SEQRES 22 B 307 ASP LEU ASP ARG CYS ARG TYR TYR LYS SER HIS ILE PHE SEQRES 23 B 307 ASN PHE ALA ALA HIS ARG ARG PRO GLU PHE TYR GLN ARG SEQRES 24 B 307 ILE THR SER GLN THR GLY VAL GLU HET EDO A 401 4 HET EDO A 402 4 HET EDO B 401 4 HET EDO B 402 4 HET EDO B 403 4 HET EDO B 404 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 6(C2 H6 O2) FORMUL 9 HOH *297(H2 O) HELIX 1 AA1 SER A 20 LYS A 38 1 19 HELIX 2 AA2 PHE A 53 TRP A 57 5 5 HELIX 3 AA3 MET A 64 PHE A 68 5 5 HELIX 4 AA4 THR A 77 GLY A 88 1 12 HELIX 5 AA5 LEU A 144 PHE A 149 1 6 HELIX 6 AA6 ASN A 172 ARG A 175 5 4 HELIX 7 AA7 TRP A 176 LEU A 185 1 10 HELIX 8 AA8 LEU A 210 ASN A 226 1 17 HELIX 9 AA9 LEU A 275 HIS A 284 1 10 HELIX 10 AB1 ASN A 287 ARG A 292 1 6 HELIX 11 AB2 ARG A 293 TYR A 297 5 5 HELIX 12 AB3 GLN A 298 GLN A 303 1 6 HELIX 13 AB4 SER B 20 LYS B 38 1 19 HELIX 14 AB5 PHE B 53 TRP B 57 5 5 HELIX 15 AB6 MET B 64 PHE B 68 5 5 HELIX 16 AB7 THR B 77 GLY B 88 1 12 HELIX 17 AB8 LEU B 144 PHE B 149 1 6 HELIX 18 AB9 ASN B 172 ARG B 175 5 4 HELIX 19 AC1 TRP B 176 LEU B 185 1 10 HELIX 20 AC2 GLU B 208 ASN B 226 1 19 HELIX 21 AC3 CYS B 278 HIS B 284 1 7 HELIX 22 AC4 ASN B 287 ARG B 292 1 6 HELIX 23 AC5 ARG B 293 PHE B 296 5 4 HELIX 24 AC6 TYR B 297 GLN B 303 1 7 SHEET 1 AA1 4 GLU A 69 ASP A 70 0 SHEET 2 AA1 4 GLY A 90 VAL A 99 1 O ALA A 96 N GLU A 69 SHEET 3 AA1 4 ARG A 106 VAL A 114 -1 O VAL A 114 N PHE A 91 SHEET 4 AA1 4 ILE A 120 ARG A 125 -1 O GLY A 122 N LEU A 113 SHEET 1 AA2 5 GLU A 69 ASP A 70 0 SHEET 2 AA2 5 GLY A 90 VAL A 99 1 O ALA A 96 N GLU A 69 SHEET 3 AA2 5 LEU A 42 VAL A 44 1 N VAL A 43 O GLY A 90 SHEET 4 AA2 5 ARG A 4 GLN A 11 1 N GLY A 8 O LEU A 42 SHEET 5 AA2 5 GLU A 267 ASP A 274 -1 O ILE A 269 N GLY A 9 SHEET 1 AA3 6 VAL A 158 ALA A 161 0 SHEET 2 AA3 6 GLY A 164 ILE A 170 -1 O VAL A 166 N TRP A 159 SHEET 3 AA3 6 LEU A 190 TYR A 195 1 O LEU A 190 N GLY A 167 SHEET 4 AA3 6 TRP A 229 ALA A 234 1 O VAL A 231 N ILE A 193 SHEET 5 AA3 6 VAL A 249 VAL A 251 -1 O VAL A 251 N VAL A 230 SHEET 6 AA3 6 ILE A 257 GLN A 260 -1 O VAL A 258 N ILE A 250 SHEET 1 AA4 2 GLY A 237 GLU A 239 0 SHEET 2 AA4 2 HIS A 242 LEU A 244 -1 O LEU A 244 N GLY A 237 SHEET 1 AA5 6 ILE B 120 ARG B 125 0 SHEET 2 AA5 6 ARG B 104 VAL B 114 -1 N LEU B 113 O VAL B 121 SHEET 3 AA5 6 GLY B 90 GLU B 101 -1 N VAL B 99 O ARG B 106 SHEET 4 AA5 6 LEU B 42 VAL B 44 1 N VAL B 43 O GLY B 90 SHEET 5 AA5 6 ARG B 4 GLN B 11 1 N GLY B 8 O LEU B 42 SHEET 6 AA5 6 GLU B 267 ASP B 274 -1 O ILE B 269 N GLY B 9 SHEET 1 AA6 6 VAL B 158 ALA B 161 0 SHEET 2 AA6 6 GLY B 164 ILE B 170 -1 O VAL B 166 N TRP B 159 SHEET 3 AA6 6 LEU B 190 TYR B 195 1 O LEU B 190 N GLY B 167 SHEET 4 AA6 6 TRP B 229 ALA B 234 1 O VAL B 231 N ILE B 193 SHEET 5 AA6 6 VAL B 249 VAL B 251 -1 O VAL B 251 N VAL B 230 SHEET 6 AA6 6 ILE B 257 GLN B 260 -1 O VAL B 258 N ILE B 250 SHEET 1 AA7 3 PRO B 198 VAL B 199 0 SHEET 2 AA7 3 HIS B 242 LEU B 244 -1 O ARG B 243 N VAL B 199 SHEET 3 AA7 3 GLY B 237 GLU B 239 -1 N GLU B 239 O HIS B 242 CISPEP 1 MET A 72 PRO A 73 0 0.52 CISPEP 2 MET B 72 PRO B 73 0 -1.20 SITE 1 AC1 1 HOH A 507 SITE 1 AC2 3 GLN A 220 GLN B 220 HOH B 582 SITE 1 AC3 3 GLU B 115 ARG B 116 ASN B 117 SITE 1 AC4 4 ARG B 107 ARG B 147 PHE B 149 GLU B 150 SITE 1 AC5 1 PHE B 213 SITE 1 AC6 2 THR B 209 HIS B 216 CRYST1 93.992 93.992 247.443 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010639 0.006143 0.000000 0.00000 SCALE2 0.000000 0.012285 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004041 0.00000