HEADER VIRAL PROTEIN 25-NOV-19 6LEE TITLE CRYSTAL STRUCTURE OF CYPOVIRUS POLYHEDRA MUTANT WITH DELETION OF TITLE 2 ALA67-ALA104 COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYHEDRIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DELETION OF ALA67-ALA104; COMPND 5 SYNONYM: C-POLYHEDRIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOMBYX MORI CYTOPLASMIC POLYHEDROSIS VIRUS; SOURCE 3 ORGANISM_COMMON: BMCPV; SOURCE 4 ORGANISM_TAXID: 110829; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS IN CELL PROTEIN CRYSTAL, POLYHEDRA, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.ABE,M.KASAMATSU,K.HIRATA,K.YAMASHITA,T.UENO REVDAT 4 22-NOV-23 6LEE 1 JRNL REVDAT 3 14-APR-21 6LEE 1 JRNL REVDAT 2 07-APR-21 6LEE 1 JRNL REVDAT 1 09-DEC-20 6LEE 0 JRNL AUTH T.K.NGUYEN,S.ABE,M.KASAMATSU,B.MAITY,K.YAMASHITA,K.HIRATA, JRNL AUTH 2 M.KOJIMA,T.UENO JRNL TITL IN-CELL ENGINEERING OF PROTEIN CRYSTALS WITH NANOPOROUS JRNL TITL 2 STRUCTURES FOR PROMOTING CASCADE REACTIONS JRNL REF ACS APPL NANO MATER V. 4 1672 2021 JRNL REFN ESSN 2574-0970 JRNL DOI 10.1021/ACSANM.0C03129 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 12398 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1358 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 937 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2900 REMARK 3 BIN FREE R VALUE SET COUNT : 98 REMARK 3 BIN FREE R VALUE : 0.3140 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1609 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 52 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.203 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.185 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.147 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.423 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.904 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1650 ; 0.009 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2240 ; 1.635 ; 1.629 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 197 ; 8.108 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 100 ;34.607 ;22.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 260 ;17.188 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;30.121 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 203 ; 0.112 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1319 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 794 ; 1.720 ; 1.689 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 989 ; 2.769 ; 2.514 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 854 ; 2.437 ; 1.926 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2408 ; 4.987 ;21.914 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 6LEE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-DEC-19. REMARK 100 THE DEPOSITION ID IS D_1300014629. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13756 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 23.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.7300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.270 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2OH6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: IN CELL CRYSRALLIZATION, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 51.92000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 51.92000 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 51.92000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 51.92000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 51.92000 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 51.92000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 51.92000 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 51.92000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 51.92000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 51.92000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 51.92000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 51.92000 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 51.92000 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 51.92000 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 51.92000 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 51.92000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 51.92000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 51.92000 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 51.92000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 51.92000 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 51.92000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 51.92000 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 51.92000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 51.92000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 51.92000 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 51.92000 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 51.92000 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 51.92000 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 51.92000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 51.92000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 51.92000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 51.92000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 51.92000 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 51.92000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 51.92000 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 51.92000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ACE A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 3 REMARK 465 VAL A 4 REMARK 465 ALA A 5 REMARK 465 GLY A 6 REMARK 465 THR A 7 REMARK 465 SER A 8 REMARK 465 HIS A 170 REMARK 465 GLU A 171 REMARK 465 TYR A 172 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 66 CG CD CE NZ REMARK 470 LYS A 105 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 57 -47.99 78.38 REMARK 500 LYS A 105 102.35 -43.14 REMARK 500 ASP A 134 75.35 -151.58 REMARK 500 GLU A 135 -65.57 73.95 REMARK 500 PRO A 142 2.38 -69.24 REMARK 500 TYR A 224 -61.77 -124.67 REMARK 500 REMARK 500 REMARK: NULL DBREF 6LEE A 2 248 UNP P11041 PYHD_CPVBM 2 248 SEQADV 6LEE ACE A 1 UNP P11041 ACETYLATION SEQADV 6LEE A UNP P11041 ALA 67 DELETION SEQADV 6LEE A UNP P11041 LEU 68 DELETION SEQADV 6LEE A UNP P11041 LYS 69 DELETION SEQADV 6LEE A UNP P11041 GLU 70 DELETION SEQADV 6LEE A UNP P11041 TYR 71 DELETION SEQADV 6LEE A UNP P11041 ARG 72 DELETION SEQADV 6LEE A UNP P11041 GLU 73 DELETION SEQADV 6LEE A UNP P11041 GLY 74 DELETION SEQADV 6LEE A UNP P11041 GLN 75 DELETION SEQADV 6LEE A UNP P11041 HIS 76 DELETION SEQADV 6LEE A UNP P11041 ASN 77 DELETION SEQADV 6LEE A UNP P11041 ASP 78 DELETION SEQADV 6LEE A UNP P11041 SER 79 DELETION SEQADV 6LEE A UNP P11041 TYR 80 DELETION SEQADV 6LEE A UNP P11041 ASP 81 DELETION SEQADV 6LEE A UNP P11041 GLU 82 DELETION SEQADV 6LEE A UNP P11041 TYR 83 DELETION SEQADV 6LEE A UNP P11041 GLU 84 DELETION SEQADV 6LEE A UNP P11041 VAL 85 DELETION SEQADV 6LEE A UNP P11041 ASN 86 DELETION SEQADV 6LEE A UNP P11041 GLN 87 DELETION SEQADV 6LEE A UNP P11041 SER 88 DELETION SEQADV 6LEE A UNP P11041 ILE 89 DELETION SEQADV 6LEE A UNP P11041 TYR 90 DELETION SEQADV 6LEE A UNP P11041 TYR 91 DELETION SEQADV 6LEE A UNP P11041 PRO 92 DELETION SEQADV 6LEE A UNP P11041 ASN 93 DELETION SEQADV 6LEE A UNP P11041 GLY 94 DELETION SEQADV 6LEE A UNP P11041 GLY 95 DELETION SEQADV 6LEE A UNP P11041 ASP 96 DELETION SEQADV 6LEE A UNP P11041 ALA 97 DELETION SEQADV 6LEE A UNP P11041 ARG 98 DELETION SEQADV 6LEE A UNP P11041 LYS 99 DELETION SEQADV 6LEE A UNP P11041 PHE 100 DELETION SEQADV 6LEE A UNP P11041 HIS 101 DELETION SEQADV 6LEE A UNP P11041 SER 102 DELETION SEQADV 6LEE A UNP P11041 ASN 103 DELETION SEQADV 6LEE A UNP P11041 ALA 104 DELETION SEQRES 1 A 210 ACE ALA ASP VAL ALA GLY THR SER ASN ARG ASP PHE ARG SEQRES 2 A 210 GLY ARG GLU GLN ARG LEU PHE ASN SER GLU GLN TYR ASN SEQRES 3 A 210 TYR ASN ASN SER LEU ASN GLY GLU VAL SER VAL TRP VAL SEQRES 4 A 210 TYR ALA TYR TYR SER ASP GLY SER VAL LEU VAL ILE ASN SEQRES 5 A 210 LYS ASN SER GLN TYR LYS VAL GLY ILE SER GLU THR PHE SEQRES 6 A 210 LYS LYS PRO ARG ALA ILE GLN ILE ILE PHE SER PRO SER SEQRES 7 A 210 VAL ASN VAL ARG THR ILE LYS MET ALA LYS GLY ASN ALA SEQRES 8 A 210 VAL SER VAL PRO ASP GLU TYR LEU GLN ARG SER HIS PRO SEQRES 9 A 210 TRP GLU ALA THR GLY ILE LYS TYR ARG LYS ILE LYS ARG SEQRES 10 A 210 ASP GLY GLU ILE VAL GLY TYR SER HIS TYR PHE GLU LEU SEQRES 11 A 210 PRO HIS GLU TYR ASN SER ILE SER LEU ALA VAL SER GLY SEQRES 12 A 210 VAL HIS LYS ASN PRO SER SER TYR ASN VAL GLY SER ALA SEQRES 13 A 210 HIS ASN VAL MET ASP VAL PHE GLN SER CYS ASP LEU ALA SEQRES 14 A 210 LEU ARG PHE CYS ASN ARG TYR TRP ALA GLU LEU GLU LEU SEQRES 15 A 210 VAL ASN HIS TYR ILE SER PRO ASN ALA TYR PRO TYR LEU SEQRES 16 A 210 ASP ILE ASN ASN HIS SER TYR GLY VAL ALA LEU SER ASN SEQRES 17 A 210 ARG GLN FORMUL 2 HOH *52(H2 O) HELIX 1 AA1 ASP A 11 SER A 30 1 20 HELIX 2 AA2 ASN A 118 ILE A 122 5 5 HELIX 3 AA3 TYR A 136 SER A 140 5 5 HELIX 4 AA4 THR A 146 TYR A 150 5 5 HELIX 5 AA5 ASN A 196 ALA A 207 1 12 HELIX 6 AA6 ALA A 216 TYR A 224 1 9 SHEET 1 AA1 6 ARG A 151 ARG A 155 0 SHEET 2 AA1 6 GLU A 158 GLU A 167 -1 O VAL A 160 N ILE A 153 SHEET 3 AA1 6 ALA A 108 PHE A 113 -1 N ILE A 111 O HIS A 164 SHEET 4 AA1 6 VAL A 35 TYR A 42 -1 N TYR A 40 O GLN A 110 SHEET 5 AA1 6 VAL A 48 SER A 55 -1 O ILE A 51 N VAL A 39 SHEET 6 AA1 6 LEU A 208 TYR A 214 -1 O TYR A 214 N VAL A 48 SHEET 1 AA2 3 LYS A 58 LYS A 66 0 SHEET 2 AA2 3 SER A 174 VAL A 182 -1 O ILE A 175 N PHE A 65 SHEET 3 AA2 3 LYS A 123 GLY A 127 -1 N ALA A 125 O ALA A 178 SHEET 1 AA3 2 TYR A 232 LEU A 233 0 SHEET 2 AA3 2 SER A 239 TYR A 240 -1 O TYR A 240 N TYR A 232 CRYST1 103.840 103.840 103.840 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009630 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009630 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009630 0.00000