HEADER TRANSCRIPTION/DNA 02-DEC-19 6LFF TITLE TRANSCRIPTION FACTOR SATB1 CUTR1 DOMAIN IN COMPLEX WITH A TITLE 2 PHOSPHOROTHIOATE DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA-BINDING PROTEIN SATB1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TRANSCRIPTION FACTOR SATB1,SPECIAL AT-RICH SEQUENCE-BINDING COMPND 5 PROTEIN 1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(*GP*(C7R)P*(PST)P*AP*AP*TP*AP*TP*AP*TP*GP*C)-3'); COMPND 9 CHAIN: C; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (5'-D(*GP*CP*AP*TP*(AS)P*(PST)P*(AS)P*(PST) COMPND 13 P*TP*AP*GP*C)-3'); COMPND 14 CHAIN: D; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SATB1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 12 ORGANISM_TAXID: 32630; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 16 ORGANISM_TAXID: 32630 KEYWDS DNA-BINDING PROTEIN, DNA MODIFICATION, TRANSCRIPTION FACTOR, KEYWDS 2 TRANSCRIPTION, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.AKUTSU,T.KUBOTA,T.YAMASAKI,K.YAMASAKI REVDAT 3 22-NOV-23 6LFF 1 REMARK REVDAT 2 13-MAY-20 6LFF 1 JRNL REVDAT 1 01-APR-20 6LFF 0 JRNL AUTH K.YAMASAKI,Y.AKUTSU,T.YAMASAKI,M.MIYAGISHI,T.KUBOTA JRNL TITL ENHANCED AFFINITY OF RACEMIC PHOSPHOROTHIOATE DNA WITH JRNL TITL 2 TRANSCRIPTION FACTOR SATB1 ARISING FROM JRNL TITL 3 DIASTEREOMER-SPECIFIC HYDROGEN BONDS AND HYDROPHOBIC JRNL TITL 4 CONTACTS. JRNL REF NUCLEIC ACIDS RES. V. 48 4551 2020 JRNL REFN ESSN 1362-4962 JRNL PMID 32187371 JRNL DOI 10.1093/NAR/GKAA170 REMARK 2 REMARK 2 RESOLUTION. 1.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 3 NUMBER OF REFLECTIONS : 18596 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.600 REMARK 3 FREE R VALUE TEST SET COUNT : 1112 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.79 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.84 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1487 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2840 REMARK 3 BIN FREE R VALUE SET COUNT : 60 REMARK 3 BIN FREE R VALUE : 0.3300 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1346 REMARK 3 NUCLEIC ACID ATOMS : 474 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 69 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.181 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.163 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.110 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.538 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.925 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.882 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1943 ; 0.004 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 1575 ; 0.002 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2728 ; 1.224 ; 1.513 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3681 ; 1.269 ; 1.848 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 162 ; 4.651 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 96 ;29.336 ;20.833 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 261 ;15.304 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;19.035 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 255 ; 0.062 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1803 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 417 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 654 ; 2.022 ; 4.263 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 653 ; 2.023 ; 4.258 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 814 ; 3.295 ; 6.378 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 815 ; 3.293 ; 6.383 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1289 ; 1.833 ; 3.941 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1290 ; 1.832 ; 3.943 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1909 ; 3.034 ; 5.838 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2330 ; 5.052 ;43.286 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2329 ; 5.051 ;43.302 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6LFF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-DEC-19. REMARK 100 THE DEPOSITION ID IS D_1300014573. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19724 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.790 REMARK 200 RESOLUTION RANGE LOW (A) : 48.940 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.35300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2O4A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM TRIS-HCL (PH 8.5), 20% REMARK 280 POLYETHYLENE GLYCOL MONOMETHYL ETHER 550 (SIGMA-ALDRICH), 20% REMARK 280 ETHYLENE GLYCOL, AND 10 MM MGCL2, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 32.62067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 65.24133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 364 REMARK 465 SER A 365 REMARK 465 HIS A 366 REMARK 465 MET A 367 REMARK 465 ASN A 368 REMARK 465 THR A 369 REMARK 465 GLU A 370 REMARK 465 ARG A 453 REMARK 465 LYS A 454 REMARK 465 ARG A 455 REMARK 465 LYS A 456 REMARK 465 GLY B 364 REMARK 465 SER B 365 REMARK 465 HIS B 366 REMARK 465 MET B 367 REMARK 465 ASN B 368 REMARK 465 THR B 369 REMARK 465 GLU B 370 REMARK 465 ARG B 453 REMARK 465 LYS B 454 REMARK 465 ARG B 455 REMARK 465 LYS B 456 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 450 CG CD NE CZ NH1 NH2 REMARK 470 DC C 12 C5' C4' O4' C3' O3' C2' C1' REMARK 470 DC C 12 N1 C2 O2 N3 C4 N4 C5 REMARK 470 DC C 12 C6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 398 19.07 -148.30 REMARK 500 PHE B 398 14.29 -147.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2O49 RELATED DB: PDB REMARK 900 2O49 CONTAINS THE SAME PROTEIN COMPLEXED WITH AN UNMODIFIED DNA REMARK 900 RELATED ID: 2O4A RELATED DB: PDB REMARK 900 2O4A CONTAINS THE SAME PROTEIN COMPLEXED WITH AN UNMODIFIED DNA DBREF 6LFF A 368 452 UNP Q01826 SATB1_HUMAN 368 452 DBREF 6LFF B 368 452 UNP Q01826 SATB1_HUMAN 368 452 DBREF 6LFF C 1 12 PDB 6LFF 6LFF 1 12 DBREF 6LFF D 1 12 PDB 6LFF 6LFF 1 12 SEQADV 6LFF GLY A 364 UNP Q01826 EXPRESSION TAG SEQADV 6LFF SER A 365 UNP Q01826 EXPRESSION TAG SEQADV 6LFF HIS A 366 UNP Q01826 EXPRESSION TAG SEQADV 6LFF MET A 367 UNP Q01826 EXPRESSION TAG SEQADV 6LFF ARG A 453 UNP Q01826 EXPRESSION TAG SEQADV 6LFF LYS A 454 UNP Q01826 EXPRESSION TAG SEQADV 6LFF ARG A 455 UNP Q01826 EXPRESSION TAG SEQADV 6LFF LYS A 456 UNP Q01826 EXPRESSION TAG SEQADV 6LFF GLY B 364 UNP Q01826 EXPRESSION TAG SEQADV 6LFF SER B 365 UNP Q01826 EXPRESSION TAG SEQADV 6LFF HIS B 366 UNP Q01826 EXPRESSION TAG SEQADV 6LFF MET B 367 UNP Q01826 EXPRESSION TAG SEQADV 6LFF ARG B 453 UNP Q01826 EXPRESSION TAG SEQADV 6LFF LYS B 454 UNP Q01826 EXPRESSION TAG SEQADV 6LFF ARG B 455 UNP Q01826 EXPRESSION TAG SEQADV 6LFF LYS B 456 UNP Q01826 EXPRESSION TAG SEQRES 1 A 93 GLY SER HIS MET ASN THR GLU VAL SER SER GLU ILE TYR SEQRES 2 A 93 GLN TRP VAL ARG ASP GLU LEU LYS ARG ALA GLY ILE SER SEQRES 3 A 93 GLN ALA VAL PHE ALA ARG VAL ALA PHE ASN ARG THR GLN SEQRES 4 A 93 GLY LEU LEU SER GLU ILE LEU ARG LYS GLU GLU ASP PRO SEQRES 5 A 93 LYS THR ALA SER GLN SER LEU LEU VAL ASN LEU ARG ALA SEQRES 6 A 93 MET GLN ASN PHE LEU GLN LEU PRO GLU ALA GLU ARG ASP SEQRES 7 A 93 ARG ILE TYR GLN ASP GLU ARG GLU ARG SER LEU ARG LYS SEQRES 8 A 93 ARG LYS SEQRES 1 B 93 GLY SER HIS MET ASN THR GLU VAL SER SER GLU ILE TYR SEQRES 2 B 93 GLN TRP VAL ARG ASP GLU LEU LYS ARG ALA GLY ILE SER SEQRES 3 B 93 GLN ALA VAL PHE ALA ARG VAL ALA PHE ASN ARG THR GLN SEQRES 4 B 93 GLY LEU LEU SER GLU ILE LEU ARG LYS GLU GLU ASP PRO SEQRES 5 B 93 LYS THR ALA SER GLN SER LEU LEU VAL ASN LEU ARG ALA SEQRES 6 B 93 MET GLN ASN PHE LEU GLN LEU PRO GLU ALA GLU ARG ASP SEQRES 7 B 93 ARG ILE TYR GLN ASP GLU ARG GLU ARG SER LEU ARG LYS SEQRES 8 B 93 ARG LYS SEQRES 1 C 12 DG C7R PST DA DA DT DA DT DA DT DG DC SEQRES 1 D 12 DG DC DA DT AS PST AS PST DT DA DG DC HET C7R C 2 26 HET PST C 3 25 HET AS D 5 28 HET PST D 6 27 HET AS D 7 28 HET PST D 8 25 HETNAM C7R 2'-DEOXY-5'-O-THIOPHOSPHONOCYTIDINE HETNAM PST THYMIDINE-5'-THIOPHOSPHATE HETNAM AS 2-DEOXY-ADENOSINE -5'-THIO-MONOPHOSPHATE HETSYN C7R 2'-DEOXY-5'-O-THIOPHOSPHONOCYTIDINE (THIOPHOSPHO HETSYN 2 C7R CONNECTION ISOFORM 1) FORMUL 3 C7R C9 H14 N3 O6 P S FORMUL 3 PST 3(C10 H15 N2 O7 P S) FORMUL 4 AS 2(C10 H14 N5 O5 P S) FORMUL 5 HOH *69(H2 O) HELIX 1 AA1 GLU A 374 GLY A 387 1 14 HELIX 2 AA2 SER A 389 ASN A 399 1 11 HELIX 3 AA3 THR A 401 GLU A 412 1 12 HELIX 4 AA4 SER A 419 GLN A 434 1 16 HELIX 5 AA5 PRO A 436 LEU A 452 1 17 HELIX 6 AA6 GLU B 374 GLY B 387 1 14 HELIX 7 AA7 SER B 389 ASN B 399 1 11 HELIX 8 AA8 THR B 401 GLU B 412 1 12 HELIX 9 AA9 SER B 419 GLN B 434 1 16 HELIX 10 AB1 PRO B 436 LEU B 452 1 17 LINK O3'A DG C 1 P AC7R C 2 1555 1555 1.60 LINK O3'B DG C 1 P BC7R C 2 1555 1555 1.60 LINK O3'AC7R C 2 P APST C 3 1555 1555 1.59 LINK O3'BC7R C 2 P BPST C 3 1555 1555 1.60 LINK O3' PST C 3 P DA C 4 1555 1555 1.59 LINK O3'A DT D 4 P A AS D 5 1555 1555 1.60 LINK O3'B DT D 4 P B AS D 5 1555 1555 1.60 LINK O3'A AS D 5 P APST D 6 1555 1555 1.61 LINK O3'B AS D 5 P BPST D 6 1555 1555 1.61 LINK O3'APST D 6 P A AS D 7 1555 1555 1.58 LINK O3'BPST D 6 P B AS D 7 1555 1555 1.60 LINK O3'A AS D 7 P APST D 8 1555 1555 1.60 LINK O3'B AS D 7 P BPST D 8 1555 1555 1.60 LINK O3' PST D 8 P DT D 9 1555 1555 1.61 CRYST1 45.320 45.320 97.862 90.00 90.00 120.00 P 31 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022065 0.012739 0.000000 0.00000 SCALE2 0.000000 0.025479 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010218 0.00000