HEADER SUGAR BINDING PROTEIN 03-DEC-19 6LFJ TITLE CRYSTAL STRUCTURE OF MOUSE DCAR2 CRD DOMAIN COMPLEX WITH IPM2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: C-TYPE LECTIN DOMAIN FAMILY 4, MEMBER B1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DENDRITIC CELL IMMUNO-ACTIVATING RECEPTOR BETA ISOFORM; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: CLEC4B1, CLEC4B, DCAR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS C-TYPE LECTIN, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Z.OMAHDI,Y.HORIKAWA,K.TOYONAGA,Y.KAKUTA,S.YAMASAKI REVDAT 4 22-NOV-23 6LFJ 1 HETSYN REVDAT 3 29-JUL-20 6LFJ 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE REVDAT 2 06-MAY-20 6LFJ 1 JRNL REVDAT 1 25-MAR-20 6LFJ 0 JRNL AUTH Z.OMAHDI,Y.HORIKAWA,M.NAGAE,K.TOYONAGA,A.IMAMURA,K.TAKATO, JRNL AUTH 2 T.TERAMOTO,H.ISHIDA,Y.KAKUTA,S.YAMASAKI JRNL TITL STRUCTURAL INSIGHT INTO THE RECOGNITION OF PATHOGEN-DERIVED JRNL TITL 2 PHOSPHOGLYCOLIPIDS BY C-TYPE LECTIN RECEPTOR DCAR. JRNL REF J.BIOL.CHEM. V. 295 5807 2020 JRNL REFN ESSN 1083-351X JRNL PMID 32139512 JRNL DOI 10.1074/JBC.RA120.012491 REMARK 2 REMARK 2 RESOLUTION. 1.84 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.84 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 80642 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.690 REMARK 3 FREE R VALUE TEST SET COUNT : 3784 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.7000 - 5.5100 0.99 2837 140 0.1736 0.1707 REMARK 3 2 5.5100 - 4.3700 0.99 2841 141 0.1251 0.1548 REMARK 3 3 4.3700 - 3.8200 0.99 2836 141 0.1275 0.1306 REMARK 3 4 3.8200 - 3.4700 1.00 2845 138 0.1377 0.1819 REMARK 3 5 3.4700 - 3.2200 1.00 2864 143 0.1464 0.1821 REMARK 3 6 3.2200 - 3.0300 1.00 2837 136 0.1571 0.1917 REMARK 3 7 3.0300 - 2.8800 1.00 2835 141 0.1635 0.1707 REMARK 3 8 2.8800 - 2.7500 1.00 2842 140 0.1641 0.1713 REMARK 3 9 2.7500 - 2.6500 1.00 2864 140 0.1795 0.2043 REMARK 3 10 2.6500 - 2.5600 1.00 2867 140 0.1710 0.1842 REMARK 3 11 2.5600 - 2.4800 1.00 2847 141 0.1810 0.2280 REMARK 3 12 2.4800 - 2.4100 1.00 2849 141 0.1950 0.2497 REMARK 3 13 2.4100 - 2.3400 1.00 2816 140 0.2005 0.2146 REMARK 3 14 2.3400 - 2.2900 1.00 2878 143 0.2062 0.2272 REMARK 3 15 2.2900 - 2.2300 0.99 2821 138 0.2077 0.2267 REMARK 3 16 2.2300 - 2.1900 1.00 2822 136 0.2144 0.2382 REMARK 3 17 2.1900 - 2.1400 1.00 2856 146 0.2156 0.2476 REMARK 3 18 2.1400 - 2.1000 1.00 2896 139 0.2194 0.2361 REMARK 3 19 2.1000 - 2.0600 1.00 2803 142 0.2323 0.2157 REMARK 3 20 2.0600 - 2.0300 1.00 2858 136 0.2392 0.2640 REMARK 3 21 2.0300 - 2.0000 1.00 2843 143 0.2431 0.2697 REMARK 3 22 2.0000 - 1.9700 1.00 2860 139 0.2733 0.2881 REMARK 3 23 1.9700 - 1.9400 1.00 2892 143 0.2821 0.2890 REMARK 3 24 1.9400 - 1.9100 1.00 2860 139 0.2789 0.2991 REMARK 3 25 1.9100 - 1.8800 1.00 2840 140 0.2787 0.2667 REMARK 3 26 1.8800 - 1.8600 1.00 2827 141 0.3098 0.3362 REMARK 3 27 1.8600 - 1.8400 0.98 2822 137 0.3026 0.3254 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.970 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -5.4323 24.7554 -13.1159 REMARK 3 T TENSOR REMARK 3 T11: 0.1608 T22: 0.1842 REMARK 3 T33: 0.1747 T12: -0.0009 REMARK 3 T13: -0.0009 T23: -0.0106 REMARK 3 L TENSOR REMARK 3 L11: 0.4346 L22: 1.3876 REMARK 3 L33: 1.3087 L12: 0.1489 REMARK 3 L13: -0.3377 L23: -0.9274 REMARK 3 S TENSOR REMARK 3 S11: 0.0048 S12: 0.0259 S13: 0.0411 REMARK 3 S21: 0.0648 S22: 0.0594 S23: 0.0579 REMARK 3 S31: -0.0777 S32: -0.0775 S33: -0.0645 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6LFJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-DEC-19. REMARK 100 THE DEPOSITION ID IS D_1300014697. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-OCT-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 80659 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.840 REMARK 200 RESOLUTION RANGE LOW (A) : 48.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.84 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 6KZR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.84450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.23450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.28200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.23450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.84450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.28200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 74 REMARK 465 ASN A 208 REMARK 465 LEU A 209 REMARK 465 MET B 74 REMARK 465 GLY B 75 REMARK 465 ASN B 208 REMARK 465 LEU B 209 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 206 O HOH A 402 2.00 REMARK 500 O HOH A 407 O HOH A 479 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU B 122 O HOH B 434 3554 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 81 -4.20 80.64 REMARK 500 ASP A 81 -5.08 81.49 REMARK 500 PHE A 96 104.94 -43.67 REMARK 500 SER A 98 138.28 -26.35 REMARK 500 ILE A 185 -60.17 -128.22 REMARK 500 ASP B 81 -9.59 82.03 REMARK 500 SER B 98 142.70 -38.59 REMARK 500 ILE B 185 -58.41 -120.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 572 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A 573 DISTANCE = 6.21 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 168 OE1 REMARK 620 2 SER A 170 OG 82.2 REMARK 620 3 GLU A 174 OE1 146.5 69.6 REMARK 620 4 ASN A 190 OD1 66.9 146.2 144.0 REMARK 620 5 ASP A 191 O 127.4 138.9 71.7 74.2 REMARK 620 6 ASP A 191 OD1 74.1 86.9 86.3 97.2 77.3 REMARK 620 7 MAN A 305 O3 133.1 110.3 75.7 83.3 72.2 148.1 REMARK 620 8 MAN A 305 O4 72.6 76.1 115.7 81.4 134.8 144.2 67.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 168 OE1 REMARK 620 2 SER B 170 OG 77.0 REMARK 620 3 GLU B 174 OE1 141.1 68.6 REMARK 620 4 ASN B 190 OD1 70.9 145.3 146.0 REMARK 620 5 ASP B 191 O 127.7 135.8 72.5 76.6 REMARK 620 6 ASP B 191 OD1 72.1 84.8 86.8 97.5 72.8 REMARK 620 7 MAN B 303 O3 134.6 115.5 78.6 80.1 75.2 147.6 REMARK 620 8 MAN B 303 O4 72.7 78.9 116.1 79.2 138.8 143.7 68.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6KZR RELATED DB: PDB REMARK 900 SAME PROTEIN WITHOUT RIGANDS DBREF 6LFJ A 78 209 UNP Q9D8Q7 Q9D8Q7_MOUSE 45 176 DBREF 6LFJ B 78 209 UNP Q9D8Q7 Q9D8Q7_MOUSE 45 176 SEQADV 6LFJ MET A 74 UNP Q9D8Q7 INITIATING METHIONINE SEQADV 6LFJ GLY A 75 UNP Q9D8Q7 EXPRESSION TAG SEQADV 6LFJ SER A 76 UNP Q9D8Q7 EXPRESSION TAG SEQADV 6LFJ MET A 77 UNP Q9D8Q7 EXPRESSION TAG SEQADV 6LFJ MET B 74 UNP Q9D8Q7 INITIATING METHIONINE SEQADV 6LFJ GLY B 75 UNP Q9D8Q7 EXPRESSION TAG SEQADV 6LFJ SER B 76 UNP Q9D8Q7 EXPRESSION TAG SEQADV 6LFJ MET B 77 UNP Q9D8Q7 EXPRESSION TAG SEQRES 1 A 136 MET GLY SER MET CYS PRO LYS ASP TRP LYS LEU PHE GLY SEQRES 2 A 136 SER HIS CYS TYR LEU VAL PRO THR VAL PHE SER SER ALA SEQRES 3 A 136 SER TRP ASN LYS SER GLU GLU ASN CYS SER ARG MET GLY SEQRES 4 A 136 ALA HIS LEU VAL VAL ILE HIS SER GLN GLU GLU GLN ASP SEQRES 5 A 136 PHE ILE THR GLY ILE LEU ASP ILE HIS ALA ALA TYR PHE SEQRES 6 A 136 ILE GLY LEU TRP ASP THR GLY HIS ARG GLN TRP GLN TRP SEQRES 7 A 136 VAL ASP GLN THR PRO TYR GLU GLU SER VAL THR PHE TRP SEQRES 8 A 136 HIS ASN GLY GLU PRO SER SER ASP ASN GLU LYS CYS VAL SEQRES 9 A 136 THR VAL TYR TYR ARG ARG ASN ILE GLY TRP GLY TRP ASN SEQRES 10 A 136 ASP ILE SER CYS ASN LEU LYS GLN LYS SER VAL CYS GLN SEQRES 11 A 136 MET LYS LYS ILE ASN LEU SEQRES 1 B 136 MET GLY SER MET CYS PRO LYS ASP TRP LYS LEU PHE GLY SEQRES 2 B 136 SER HIS CYS TYR LEU VAL PRO THR VAL PHE SER SER ALA SEQRES 3 B 136 SER TRP ASN LYS SER GLU GLU ASN CYS SER ARG MET GLY SEQRES 4 B 136 ALA HIS LEU VAL VAL ILE HIS SER GLN GLU GLU GLN ASP SEQRES 5 B 136 PHE ILE THR GLY ILE LEU ASP ILE HIS ALA ALA TYR PHE SEQRES 6 B 136 ILE GLY LEU TRP ASP THR GLY HIS ARG GLN TRP GLN TRP SEQRES 7 B 136 VAL ASP GLN THR PRO TYR GLU GLU SER VAL THR PHE TRP SEQRES 8 B 136 HIS ASN GLY GLU PRO SER SER ASP ASN GLU LYS CYS VAL SEQRES 9 B 136 THR VAL TYR TYR ARG ARG ASN ILE GLY TRP GLY TRP ASN SEQRES 10 B 136 ASP ILE SER CYS ASN LEU LYS GLN LYS SER VAL CYS GLN SEQRES 11 B 136 MET LYS LYS ILE ASN LEU HET CA A 301 1 HET B3P A 302 19 HET MAN A 303 11 HET IPD A 304 16 HET MAN A 305 11 HET CA B 301 1 HET IPD B 302 16 HET MAN B 303 11 HETNAM CA CALCIUM ION HETNAM B3P 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)- HETNAM 2 B3P PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM IPD D-MYO-INOSITOL-1-PHOSPHATE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 3 CA 2(CA 2+) FORMUL 4 B3P C11 H26 N2 O6 FORMUL 5 MAN 3(C6 H12 O6) FORMUL 6 IPD 2(C6 H11 O9 P 2-) FORMUL 11 HOH *290(H2 O) HELIX 1 AA1 SER A 100 MET A 111 1 12 HELIX 2 AA2 SER A 120 ILE A 130 1 11 HELIX 3 AA3 GLU A 158 THR A 162 5 5 HELIX 4 AA4 SER B 100 MET B 111 1 12 HELIX 5 AA5 SER B 120 ILE B 130 1 11 HELIX 6 AA6 GLU B 158 THR B 162 5 5 SHEET 1 AA1 4 LYS A 83 PHE A 85 0 SHEET 2 AA1 4 HIS A 88 LEU A 91 -1 O TYR A 90 N LYS A 83 SHEET 3 AA1 4 CYS A 202 LYS A 205 -1 O CYS A 202 N LEU A 91 SHEET 4 AA1 4 HIS A 114 LEU A 115 -1 N HIS A 114 O GLN A 203 SHEET 1 AA2 4 TRP A 149 TRP A 151 0 SHEET 2 AA2 4 TYR A 137 ASP A 143 -1 N TRP A 142 O GLN A 150 SHEET 3 AA2 4 CYS A 176 ARG A 182 -1 O VAL A 179 N TYR A 137 SHEET 4 AA2 4 GLY A 186 ILE A 192 -1 O ILE A 192 N CYS A 176 SHEET 1 AA3 3 TRP A 149 TRP A 151 0 SHEET 2 AA3 3 TYR A 137 ASP A 143 -1 N TRP A 142 O GLN A 150 SHEET 3 AA3 3 LYS A 199 SER A 200 1 O LYS A 199 N PHE A 138 SHEET 1 AA4 4 LYS B 83 PHE B 85 0 SHEET 2 AA4 4 HIS B 88 LEU B 91 -1 O TYR B 90 N LYS B 83 SHEET 3 AA4 4 CYS B 202 LYS B 205 -1 O CYS B 202 N LEU B 91 SHEET 4 AA4 4 HIS B 114 LEU B 115 -1 N HIS B 114 O GLN B 203 SHEET 1 AA5 4 TRP B 149 TRP B 151 0 SHEET 2 AA5 4 TYR B 137 ASP B 143 -1 N TRP B 142 O GLN B 150 SHEET 3 AA5 4 CYS B 176 ARG B 182 -1 O VAL B 179 N TYR B 137 SHEET 4 AA5 4 GLY B 186 ILE B 192 -1 O ILE B 192 N CYS B 176 SHEET 1 AA6 3 TRP B 149 TRP B 151 0 SHEET 2 AA6 3 TYR B 137 ASP B 143 -1 N TRP B 142 O GLN B 150 SHEET 3 AA6 3 LYS B 199 SER B 200 1 O LYS B 199 N PHE B 138 SSBOND 1 CYS A 78 CYS A 89 1555 1555 2.09 SSBOND 2 CYS A 108 CYS A 202 1555 1555 2.07 SSBOND 3 CYS A 176 CYS A 194 1555 1555 2.06 SSBOND 4 CYS B 78 CYS B 89 1555 1555 2.10 SSBOND 5 CYS B 108 CYS B 202 1555 1555 2.07 SSBOND 6 CYS B 176 CYS B 194 1555 1555 2.08 LINK C1 MAN A 303 O6 IPD A 304 1555 1555 1.49 LINK O2 IPD A 304 C1 MAN A 305 1555 1555 1.43 LINK O2 IPD B 302 C1 MAN B 303 1555 1555 1.44 LINK OE1 GLU A 168 CA CA A 301 1555 1555 2.50 LINK OG SER A 170 CA CA A 301 1555 1555 2.42 LINK OE1 GLU A 174 CA CA A 301 1555 1555 2.47 LINK OD1 ASN A 190 CA CA A 301 1555 1555 2.43 LINK O ASP A 191 CA CA A 301 1555 1555 2.43 LINK OD1 ASP A 191 CA CA A 301 1555 1555 2.27 LINK CA CA A 301 O3 MAN A 305 1555 1555 2.47 LINK CA CA A 301 O4 MAN A 305 1555 1555 2.61 LINK OE1 GLU B 168 CA CA B 301 1555 1555 2.62 LINK OG SER B 170 CA CA B 301 1555 1555 2.45 LINK OE1 GLU B 174 CA CA B 301 1555 1555 2.47 LINK OD1 ASN B 190 CA CA B 301 1555 1555 2.37 LINK O ASP B 191 CA CA B 301 1555 1555 2.38 LINK OD1 ASP B 191 CA CA B 301 1555 1555 2.30 LINK CA CA B 301 O3 MAN B 303 1555 1555 2.36 LINK CA CA B 301 O4 MAN B 303 1555 1555 2.63 CISPEP 1 GLU A 168 PRO A 169 0 -7.91 CISPEP 2 GLU B 168 PRO B 169 0 -2.37 CRYST1 65.689 72.564 100.469 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015223 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013781 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009953 0.00000