HEADER HYDROLASE 03-DEC-19 6LFR TITLE POA1P IN COMPLEX WITH ADP-RIBOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADP-RIBOSE 1''-PHOSPHATE PHOSPHATASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: [PROTEIN ADP-RIBOSYLGLUTAMATE] HYDROLASE; COMPND 5 EC: 3.1.3.84,3.2.2.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: S288C; SOURCE 6 GENE: POA1, YBR022W, YBR0304; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DEACETYLASE, MACRO DOMAIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.C.CHIU,C.H.HSU REVDAT 3 22-NOV-23 6LFR 1 REMARK REVDAT 2 22-JUN-22 6LFR 1 JRNL REVDAT 1 09-DEC-20 6LFR 0 JRNL AUTH Y.C.CHIU,M.C.TSENG,C.H.HSU JRNL TITL EXPANDING THE SUBSTRATE SPECIFICITY OF MACRO DOMAINS TOWARD JRNL TITL 2 3''-ISOMER OF O-ACETYL-ADP-RIBOSE JRNL REF ACS CATALYSIS V. 11 11075 2021 JRNL REFN ESSN 2155-5435 JRNL DOI 10.1021/ACSCATAL.1C01943 REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.52 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 3.140 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 15094 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1521 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 18.3813 - 3.9495 0.84 1218 136 0.1409 0.1599 REMARK 3 2 3.9495 - 3.1399 0.90 1275 137 0.1373 0.1953 REMARK 3 3 3.1399 - 2.7445 0.90 1255 139 0.1778 0.1959 REMARK 3 4 2.7445 - 2.4942 0.90 1268 146 0.2041 0.2095 REMARK 3 5 2.4942 - 2.3158 0.90 1248 137 0.1901 0.2270 REMARK 3 6 2.3158 - 2.1795 0.90 1249 145 0.2048 0.2044 REMARK 3 7 2.1795 - 2.0705 0.90 1269 136 0.1984 0.2621 REMARK 3 8 2.0705 - 1.9805 0.90 1226 139 0.2068 0.2444 REMARK 3 9 1.9805 - 1.9043 0.90 1232 138 0.2096 0.2211 REMARK 3 10 1.9043 - 1.8387 0.90 1263 139 0.2139 0.2310 REMARK 3 11 1.8387 - 1.7812 0.77 1063 119 0.2179 0.3027 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.430 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: 0.0200 REMARK 3 OPERATOR: H,-H-K,-L REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 33 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.6857 22.9143 -2.9557 REMARK 3 T TENSOR REMARK 3 T11: 0.1108 T22: 0.2164 REMARK 3 T33: 0.1400 T12: 0.0361 REMARK 3 T13: -0.0169 T23: 0.0037 REMARK 3 L TENSOR REMARK 3 L11: 0.9216 L22: 2.0252 REMARK 3 L33: 1.6144 L12: -0.3906 REMARK 3 L13: 0.1328 L23: -0.1689 REMARK 3 S TENSOR REMARK 3 S11: 0.2147 S12: 0.6216 S13: 0.1198 REMARK 3 S21: -0.2352 S22: -0.2602 S23: 0.1432 REMARK 3 S31: 0.1372 S32: 0.1537 S33: 0.0254 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 34 THROUGH 43 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.3194 27.5914 0.2561 REMARK 3 T TENSOR REMARK 3 T11: 0.1312 T22: 0.2043 REMARK 3 T33: 0.2063 T12: -0.0243 REMARK 3 T13: 0.0054 T23: 0.0994 REMARK 3 L TENSOR REMARK 3 L11: 4.9156 L22: 3.9084 REMARK 3 L33: 7.9378 L12: 0.6133 REMARK 3 L13: -4.0874 L23: 3.6604 REMARK 3 S TENSOR REMARK 3 S11: 0.1348 S12: 0.3075 S13: 0.6467 REMARK 3 S21: -0.3447 S22: -0.0224 S23: -0.1027 REMARK 3 S31: -0.3885 S32: 0.1663 S33: -0.0889 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 44 THROUGH 61 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.8367 18.6460 12.8606 REMARK 3 T TENSOR REMARK 3 T11: 0.1457 T22: 0.1305 REMARK 3 T33: 0.1439 T12: 0.0440 REMARK 3 T13: -0.0427 T23: -0.0144 REMARK 3 L TENSOR REMARK 3 L11: 2.0104 L22: 4.3778 REMARK 3 L33: 2.4229 L12: -0.0755 REMARK 3 L13: -0.3185 L23: -2.2024 REMARK 3 S TENSOR REMARK 3 S11: -0.1273 S12: -0.4029 S13: 0.0930 REMARK 3 S21: 0.3668 S22: -0.0532 S23: -0.0153 REMARK 3 S31: -0.0652 S32: 0.0788 S33: 0.1142 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 62 THROUGH 84 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.0692 21.3929 6.7116 REMARK 3 T TENSOR REMARK 3 T11: 0.0902 T22: 0.1009 REMARK 3 T33: 0.1314 T12: 0.0151 REMARK 3 T13: -0.0191 T23: -0.0155 REMARK 3 L TENSOR REMARK 3 L11: 3.2098 L22: 6.7872 REMARK 3 L33: 2.7657 L12: -2.3342 REMARK 3 L13: -0.3300 L23: 0.9733 REMARK 3 S TENSOR REMARK 3 S11: -0.0631 S12: -0.0877 S13: 0.0049 REMARK 3 S21: 0.2256 S22: 0.0715 S23: 0.2029 REMARK 3 S31: -0.0133 S32: -0.1019 S33: -0.0021 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 85 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.9789 8.8389 1.8825 REMARK 3 T TENSOR REMARK 3 T11: 0.2562 T22: 0.1896 REMARK 3 T33: 0.4355 T12: 0.0386 REMARK 3 T13: -0.0851 T23: -0.1099 REMARK 3 L TENSOR REMARK 3 L11: 1.4556 L22: 1.8081 REMARK 3 L33: 1.3742 L12: -0.4290 REMARK 3 L13: -0.1341 L23: -0.0223 REMARK 3 S TENSOR REMARK 3 S11: 0.1654 S12: 0.3582 S13: -0.5265 REMARK 3 S21: -0.0584 S22: -0.0307 S23: 0.4815 REMARK 3 S31: 0.4075 S32: -0.0462 S33: 0.0887 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 114 THROUGH 136 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.9887 24.8799 13.1199 REMARK 3 T TENSOR REMARK 3 T11: 0.2172 T22: 0.3034 REMARK 3 T33: 0.1712 T12: 0.0280 REMARK 3 T13: 0.0313 T23: -0.0162 REMARK 3 L TENSOR REMARK 3 L11: 4.4502 L22: 2.0947 REMARK 3 L33: 2.2536 L12: -2.1856 REMARK 3 L13: 1.3799 L23: 0.1134 REMARK 3 S TENSOR REMARK 3 S11: -0.1749 S12: -0.6539 S13: -0.1008 REMARK 3 S21: 0.3347 S22: 0.1454 S23: -0.0575 REMARK 3 S31: 0.1164 S32: -0.0520 S33: 0.0220 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 137 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.5589 18.2094 -3.4942 REMARK 3 T TENSOR REMARK 3 T11: 0.1607 T22: 0.2721 REMARK 3 T33: 0.1365 T12: 0.0725 REMARK 3 T13: -0.0484 T23: -0.1156 REMARK 3 L TENSOR REMARK 3 L11: 0.6967 L22: 0.9244 REMARK 3 L33: 1.5529 L12: -0.1845 REMARK 3 L13: -0.8353 L23: 0.1739 REMARK 3 S TENSOR REMARK 3 S11: 0.1469 S12: 0.3636 S13: -0.1989 REMARK 3 S21: -0.1197 S22: -0.0380 S23: 0.0173 REMARK 3 S31: 0.1695 S32: 0.0359 S33: 0.2044 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 156 THROUGH 166 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.2490 9.0321 -8.3467 REMARK 3 T TENSOR REMARK 3 T11: 0.3674 T22: 0.4222 REMARK 3 T33: 0.4750 T12: 0.0590 REMARK 3 T13: -0.1387 T23: -0.2661 REMARK 3 L TENSOR REMARK 3 L11: 0.3752 L22: 0.5730 REMARK 3 L33: 2.2903 L12: -0.2343 REMARK 3 L13: -0.6307 L23: 0.9760 REMARK 3 S TENSOR REMARK 3 S11: -0.0296 S12: 0.1588 S13: -0.1488 REMARK 3 S21: 0.0714 S22: 0.0059 S23: 0.0066 REMARK 3 S31: 0.4923 S32: -0.1201 S33: 0.1891 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 167 THROUGH 177 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.5983 18.3264 -6.8658 REMARK 3 T TENSOR REMARK 3 T11: 0.2181 T22: 0.3879 REMARK 3 T33: 0.2608 T12: 0.0606 REMARK 3 T13: -0.0903 T23: -0.1270 REMARK 3 L TENSOR REMARK 3 L11: 6.8427 L22: 5.5715 REMARK 3 L33: 3.1686 L12: 3.8445 REMARK 3 L13: -1.6166 L23: -2.3153 REMARK 3 S TENSOR REMARK 3 S11: -0.1900 S12: 0.5526 S13: -0.2546 REMARK 3 S21: -0.3255 S22: 0.0490 S23: 0.3850 REMARK 3 S31: 0.1877 S32: -0.4058 S33: 0.0210 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6LFR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-DEC-19. REMARK 100 THE DEPOSITION ID IS D_1300014078. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-MAR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL15A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15302 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.780 REMARK 200 RESOLUTION RANGE LOW (A) : 26.518 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 9.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 51.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6LFQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, SODIUM CACODYLATE REMARK 280 TRIHYDRATE, PEG 8000, GLYCEROL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 12.64833 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 25.29667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 12.64833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 25.29667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 425 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 437 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 LYS A 115 REMARK 465 ASP A 116 REMARK 465 LYS A 117 REMARK 465 THR A 118 REMARK 465 ARG A 119 REMARK 465 THR A 120 REMARK 465 SER A 121 REMARK 465 GLU A 122 REMARK 465 ASP A 123 REMARK 465 SER A 124 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 315 O HOH A 404 1.82 REMARK 500 OE1 GLU A 113 O HOH A 301 1.86 REMARK 500 O HOH A 331 O HOH A 451 1.87 REMARK 500 O HOH A 332 O HOH A 413 1.94 REMARK 500 O HOH A 336 O HOH A 411 1.95 REMARK 500 O HOH A 363 O HOH A 467 1.96 REMARK 500 NH1 ARG A 42 O HOH A 302 1.98 REMARK 500 OE1 GLU A 55 O HOH A 303 2.02 REMARK 500 O HOH A 475 O HOH A 477 2.04 REMARK 500 O HOH A 377 O HOH A 471 2.05 REMARK 500 O HOH A 436 O HOH A 464 2.05 REMARK 500 N ILE A 125 O HOH A 304 2.05 REMARK 500 N SER A 2 O HOH A 305 2.07 REMARK 500 O HOH A 401 O HOH A 446 2.09 REMARK 500 O HOH A 413 O HOH A 418 2.09 REMARK 500 O HOH A 313 O HOH A 414 2.12 REMARK 500 O HOH A 442 O HOH A 459 2.13 REMARK 500 OH TYR A 100 O HOH A 306 2.14 REMARK 500 OE1 GLU A 72 O HOH A 307 2.15 REMARK 500 OD1 ASP A 127 O HOH A 308 2.16 REMARK 500 OG1 THR A 159 O HOH A 309 2.16 REMARK 500 OE1 GLN A 176 O HOH A 310 2.16 REMARK 500 O HOH A 367 O HOH A 428 2.17 REMARK 500 O HOH A 375 O HOH A 434 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 391 O HOH A 394 6555 1.92 REMARK 500 O HOH A 394 O HOH A 432 1554 2.10 REMARK 500 O HOH A 413 O HOH A 439 2655 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 71 -38.02 71.05 REMARK 500 ASN A 148 -13.04 72.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue APR A 201 DBREF 6LFR A 1 177 UNP P38218 POA1_YEAST 1 177 SEQADV 6LFR GLY A -2 UNP P38218 EXPRESSION TAG SEQADV 6LFR SER A -1 UNP P38218 EXPRESSION TAG SEQADV 6LFR HIS A 0 UNP P38218 EXPRESSION TAG SEQRES 1 A 180 GLY SER HIS MET SER ASN ILE THR TYR VAL LYS GLY ASN SEQRES 2 A 180 ILE LEU LYS PRO LYS SER TYR ALA ARG ILE LEU ILE HIS SEQRES 3 A 180 SER CYS ASN CYS ASN GLY SER TRP GLY GLY GLY ILE ALA SEQRES 4 A 180 TYR GLN LEU ALA LEU ARG TYR PRO LYS ALA GLU LYS ASP SEQRES 5 A 180 TYR VAL GLU VAL CYS GLU LYS TYR GLY SER ASN LEU LEU SEQRES 6 A 180 GLY LYS CYS ILE LEU LEU PRO SER TYR GLU ASN SER ASP SEQRES 7 A 180 LEU LEU ILE CYS CYS LEU PHE THR SER SER PHE GLY GLY SEQRES 8 A 180 SER SER HIS GLY GLU LYS GLN SER ILE LEU ASN TYR THR SEQRES 9 A 180 LYS LEU ALA LEU ASP LYS LEU LYS THR PHE ARG GLU ALA SEQRES 10 A 180 LYS ASP LYS THR ARG THR SER GLU ASP SER ILE GLY ASP SEQRES 11 A 180 TYR LEU ASN GLY HIS ILE LYS TYR PRO ILE GLY GLU TYR SEQRES 12 A 180 LYS LEU GLU MET PRO GLN ILE ASN SER GLY ILE PHE GLY SEQRES 13 A 180 VAL PRO TRP LYS GLU THR GLU ARG VAL LEU GLU GLU PHE SEQRES 14 A 180 SER GLY ASP MET SER PHE THR VAL TYR GLN LEU HET APR A 201 36 HETNAM APR ADENOSINE-5-DIPHOSPHORIBOSE FORMUL 2 APR C15 H23 N5 O14 P2 FORMUL 3 HOH *177(H2 O) HELIX 1 AA1 GLY A 33 TYR A 43 1 11 HELIX 2 AA2 TYR A 43 GLY A 58 1 16 HELIX 3 AA3 SER A 59 LEU A 62 5 4 HELIX 4 AA4 GLY A 87 HIS A 91 5 5 HELIX 5 AA5 GLU A 93 ALA A 114 1 22 HELIX 6 AA6 PRO A 136 TYR A 140 5 5 HELIX 7 AA7 PRO A 155 GLU A 165 1 11 SHEET 1 AA1 6 ILE A 4 LYS A 8 0 SHEET 2 AA1 6 PHE A 172 GLN A 176 1 O GLN A 176 N VAL A 7 SHEET 3 AA1 6 LYS A 141 MET A 144 1 N MET A 144 O TYR A 175 SHEET 4 AA1 6 ARG A 19 ASN A 26 1 N ILE A 20 O LYS A 141 SHEET 5 AA1 6 LEU A 76 SER A 84 1 O LEU A 81 N CYS A 25 SHEET 6 AA1 6 CYS A 65 PRO A 69 -1 N LEU A 68 O ILE A 78 SITE 1 AC1 27 ASN A 10 ILE A 11 SER A 24 ASN A 26 SITE 2 AC1 27 SER A 30 GLY A 33 GLY A 34 ILE A 35 SITE 3 AC1 27 ALA A 36 GLN A 38 GLY A 87 PRO A 145 SITE 4 AC1 27 GLN A 146 ILE A 147 ASN A 148 SER A 149 SITE 5 AC1 27 GLY A 150 ILE A 151 PHE A 152 LEU A 177 SITE 6 AC1 27 HOH A 333 HOH A 348 HOH A 359 HOH A 365 SITE 7 AC1 27 HOH A 385 HOH A 396 HOH A 414 CRYST1 85.619 85.619 37.945 90.00 90.00 120.00 P 64 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011680 0.006743 0.000000 0.00000 SCALE2 0.000000 0.013486 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026354 0.00000