HEADER TRANSFERASE 04-DEC-19 6LG1 TITLE CRYSTAL STRUCTURE OF LPCGTA IN COMPLEX WITH UDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: LPCGTA; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LANDOLTIA PUNCTATA; SOURCE 3 ORGANISM_TAXID: 50518; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS LPCGTA, UDP, COMPLEX, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.M.GAO,C.H.YUN REVDAT 4 22-NOV-23 6LG1 1 REMARK REVDAT 3 16-DEC-20 6LG1 1 JRNL REVDAT 2 02-DEC-20 6LG1 1 JRNL REVDAT 1 18-NOV-20 6LG1 0 JRNL AUTH Z.L.WANG,H.M.GAO,S.WANG,M.ZHANG,K.CHEN,Y.Q.ZHANG,H.D.WANG, JRNL AUTH 2 B.Y.HAN,L.L.XU,T.Q.SONG,C.H.YUN,X.QIAO,M.YE JRNL TITL DISSECTION OF THE GENERAL TWO-STEP DI- C -GLYCOSYLATION JRNL TITL 2 PATHWAY FOR THE BIOSYNTHESIS OF (ISO)SCHAFTOSIDES IN HIGHER JRNL TITL 3 PLANTS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 117 30816 2020 JRNL REFN ESSN 1091-6490 JRNL PMID 33199630 JRNL DOI 10.1073/PNAS.2012745117 REMARK 2 REMARK 2 RESOLUTION. 3.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 26860 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.249 REMARK 3 R VALUE (WORKING SET) : 0.247 REMARK 3 FREE R VALUE : 0.284 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.740 REMARK 3 FREE R VALUE TEST SET COUNT : 1272 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.6540 - 6.3324 0.98 3014 122 0.2280 0.2662 REMARK 3 2 6.3324 - 5.0286 1.00 2893 154 0.2599 0.2729 REMARK 3 3 5.0286 - 4.3936 1.00 2846 137 0.2232 0.2390 REMARK 3 4 4.3936 - 3.9922 1.00 2813 168 0.2248 0.2570 REMARK 3 5 3.9922 - 3.7062 1.00 2836 132 0.2450 0.3194 REMARK 3 6 3.7062 - 3.4878 1.00 2793 157 0.2729 0.3229 REMARK 3 7 3.4878 - 3.3132 1.00 2826 141 0.2836 0.3251 REMARK 3 8 3.3132 - 3.1690 1.00 2816 126 0.2972 0.3490 REMARK 3 9 3.1690 - 3.0471 0.98 2751 135 0.3524 0.4013 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.440 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.610 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 89.69 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 77.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6LG1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1300014699. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAY-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97853 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28294 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6LFN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8M POTASSIUM SODIUM TARTRATE REMARK 280 TETRAHYDRATE, 0.1M TRIS PH 8.5,0.5%(W/V) POLYETHYLENE GLYCOL REMARK 280 MONOMETHYL ETHER 5,000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.72350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 100.66400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.85150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 100.66400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.72350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.85150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 PRO A 3 REMARK 465 GLY A 4 REMARK 465 SER A 5 REMARK 465 SER A 6 REMARK 465 GLU A 7 REMARK 465 ARG A 8 REMARK 465 ASN A 9 REMARK 465 HIS A 10 REMARK 465 PRO A 11 REMARK 465 ALA A 12 REMARK 465 GLU A 13 REMARK 465 ARG A 14 REMARK 465 PRO A 15 REMARK 465 THR A 16 REMARK 465 THR A 17 REMARK 465 ILE A 18 REMARK 465 LEU A 19 REMARK 465 SER A 20 REMARK 465 GLY A 21 REMARK 465 SER A 22 REMARK 465 MET A 23 REMARK 465 ALA A 24 REMARK 465 PRO A 25 REMARK 465 ALA A 26 REMARK 465 GLY A 180 REMARK 465 ALA A 263 REMARK 465 SER A 264 REMARK 465 ASP A 265 REMARK 465 ILE A 266 REMARK 465 HIS A 267 REMARK 465 THR A 268 REMARK 465 ALA A 269 REMARK 465 ALA A 270 REMARK 465 ASP A 271 REMARK 465 LYS A 321 REMARK 465 THR A 322 REMARK 465 LYS A 323 REMARK 465 LYS A 324 REMARK 465 VAL A 325 REMARK 465 ASP A 326 REMARK 465 ARG A 327 REMARK 465 GLU A 328 REMARK 465 ASP A 329 REMARK 465 GLN A 330 REMARK 465 GLU A 331 REMARK 465 GLY A 332 REMARK 465 GLU A 333 REMARK 465 LYS A 334 REMARK 465 ALA A 335 REMARK 465 VAL A 336 REMARK 465 ASP A 337 REMARK 465 GLY A 483 REMARK 465 ASP A 484 REMARK 465 GLY B 0 REMARK 465 MET B 1 REMARK 465 ARG B 2 REMARK 465 PRO B 3 REMARK 465 GLY B 4 REMARK 465 SER B 5 REMARK 465 SER B 6 REMARK 465 GLU B 7 REMARK 465 ARG B 8 REMARK 465 ASN B 9 REMARK 465 HIS B 10 REMARK 465 PRO B 11 REMARK 465 ALA B 12 REMARK 465 GLU B 13 REMARK 465 ARG B 14 REMARK 465 PRO B 15 REMARK 465 THR B 16 REMARK 465 THR B 17 REMARK 465 ILE B 18 REMARK 465 LEU B 19 REMARK 465 SER B 20 REMARK 465 GLY B 21 REMARK 465 SER B 22 REMARK 465 MET B 23 REMARK 465 ALA B 24 REMARK 465 PRO B 25 REMARK 465 ALA B 26 REMARK 465 ASP B 97 REMARK 465 VAL B 98 REMARK 465 SER B 99 REMARK 465 SER B 100 REMARK 465 VAL B 101 REMARK 465 VAL B 102 REMARK 465 GLY B 181 REMARK 465 VAL B 182 REMARK 465 ALA B 263 REMARK 465 SER B 264 REMARK 465 ASP B 265 REMARK 465 ILE B 266 REMARK 465 HIS B 267 REMARK 465 THR B 268 REMARK 465 LYS B 321 REMARK 465 THR B 322 REMARK 465 LYS B 323 REMARK 465 LYS B 324 REMARK 465 VAL B 325 REMARK 465 ASP B 326 REMARK 465 ARG B 327 REMARK 465 GLU B 328 REMARK 465 ASP B 329 REMARK 465 GLN B 330 REMARK 465 GLU B 331 REMARK 465 GLY B 332 REMARK 465 GLU B 333 REMARK 465 LYS B 334 REMARK 465 ALA B 335 REMARK 465 VAL B 336 REMARK 465 ASP B 337 REMARK 465 GLY B 483 REMARK 465 ASP B 484 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 28 CG1 CG2 REMARK 470 SER A 36 OG REMARK 470 SER A 37 OG REMARK 470 HIS A 55 ND1 CD2 CE1 NE2 REMARK 470 THR A 63 CG2 REMARK 470 THR A 65 CG2 REMARK 470 VAL A 67 CG1 CG2 REMARK 470 ARG A 74 CD NE CZ NH1 NH2 REMARK 470 GLU A 77 CG CD OE1 OE2 REMARK 470 SER A 81 OG REMARK 470 ARG A 88 CD NE CZ NH1 NH2 REMARK 470 GLU A 90 CD OE1 OE2 REMARK 470 PHE A 91 CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A 93 CG CD1 CD2 REMARK 470 LEU A 94 CG CD1 CD2 REMARK 470 PRO A 95 CG CD REMARK 470 PHE A 96 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP A 97 CG OD1 OD2 REMARK 470 VAL A 98 CG1 CG2 REMARK 470 SER A 99 OG REMARK 470 SER A 100 OG REMARK 470 VAL A 101 CG1 CG2 REMARK 470 VAL A 102 CG1 CG2 REMARK 470 SER A 103 OG REMARK 470 ASP A 104 CG OD1 OD2 REMARK 470 ASP A 105 CG OD1 OD2 REMARK 470 LEU A 109 CD1 CD2 REMARK 470 GLN A 110 CG CD OE1 NE2 REMARK 470 ARG A 113 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 114 CG1 CG2 CD1 REMARK 470 SER A 115 OG REMARK 470 ARG A 116 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 119 CD NE CZ NH1 NH2 REMARK 470 HIS A 120 CG ND1 CD2 CE1 NE2 REMARK 470 VAL A 124 CG2 REMARK 470 SER A 133 OG REMARK 470 LEU A 137 CD1 CD2 REMARK 470 LEU A 141 CG CD1 CD2 REMARK 470 THR A 142 CG2 REMARK 470 GLU A 175 CD OE1 OE2 REMARK 470 ILE A 176 CG2 CD1 REMARK 470 SER A 179 OG REMARK 470 VAL A 182 CG2 REMARK 470 THR A 183 CG2 REMARK 470 LYS A 185 CG CD CE NZ REMARK 470 ILE A 186 CG2 CD1 REMARK 470 VAL A 189 CB CG1 CG2 REMARK 470 GLU A 191 CG CD OE1 OE2 REMARK 470 ASP A 192 OD1 OD2 REMARK 470 LEU A 193 CD1 CD2 REMARK 470 ARG A 203 CD NE CZ NH1 NH2 REMARK 470 ARG A 206 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 207 OD1 ND2 REMARK 470 LEU A 208 CG CD1 CD2 REMARK 470 THR A 210 OG1 CG2 REMARK 470 GLN A 212 CG CD OE1 NE2 REMARK 470 ILE A 214 CG2 CD1 REMARK 470 ARG A 218 CD NE CZ NH1 NH2 REMARK 470 ASP A 224 CG OD1 OD2 REMARK 470 THR A 238 OG1 CG2 REMARK 470 SER A 245 OG REMARK 470 LYS A 246 CD CE NZ REMARK 470 VAL A 248 CG1 CG2 REMARK 470 SER A 249 OG REMARK 470 PHE A 251 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A 253 CG CD1 CD2 REMARK 470 ASP A 272 CG OD1 OD2 REMARK 470 ARG A 294 CG CD NE CZ NH1 NH2 REMARK 470 THR A 295 CG2 REMARK 470 LEU A 297 CD1 CD2 REMARK 470 ARG A 303 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 305 CD1 CD2 REMARK 470 SER A 311 OG REMARK 470 GLU A 338 CG CD OE1 OE2 REMARK 470 LEU A 339 CG CD1 CD2 REMARK 470 GLU A 342 CD OE1 OE2 REMARK 470 GLN A 346 CG CD OE1 NE2 REMARK 470 GLU A 349 CG CD OE1 OE2 REMARK 470 LYS A 353 CD CE NZ REMARK 470 ARG A 362 CD NE CZ NH1 NH2 REMARK 470 SER A 369 OG REMARK 470 MET A 390 SD CE REMARK 470 LYS A 410 CD CE NZ REMARK 470 LYS A 415 CD CE NZ REMARK 470 GLU A 432 CD OE1 OE2 REMARK 470 ARG A 460 CD NE CZ NH1 NH2 REMARK 470 ARG A 470 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 471 CD OE1 NE2 REMARK 470 LEU A 472 CD1 CD2 REMARK 470 GLU A 473 CD OE1 OE2 REMARK 470 LEU A 475 CD1 CD2 REMARK 470 SER A 477 OG REMARK 470 CYS A 481 SG REMARK 470 VAL B 28 CG1 CG2 REMARK 470 SER B 36 OG REMARK 470 SER B 37 OG REMARK 470 HIS B 55 ND1 CD2 CE1 NE2 REMARK 470 THR B 63 CG2 REMARK 470 THR B 65 CG2 REMARK 470 VAL B 67 CG1 CG2 REMARK 470 ARG B 74 CD NE CZ NH1 NH2 REMARK 470 GLU B 77 CG CD OE1 OE2 REMARK 470 SER B 81 OG REMARK 470 ARG B 88 CD NE CZ NH1 NH2 REMARK 470 GLU B 90 CD OE1 OE2 REMARK 470 PHE B 91 CD1 CD2 CE1 CE2 CZ REMARK 470 LEU B 93 CG CD1 CD2 REMARK 470 LEU B 94 CG CD1 CD2 REMARK 470 PRO B 95 CG CD REMARK 470 PHE B 96 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER B 103 OG REMARK 470 ASP B 104 CG OD1 OD2 REMARK 470 ASP B 105 CG OD1 OD2 REMARK 470 LEU B 109 CD1 CD2 REMARK 470 GLN B 110 CG CD OE1 NE2 REMARK 470 ARG B 113 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 114 CG1 CG2 CD1 REMARK 470 SER B 115 OG REMARK 470 ARG B 116 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 119 CD NE CZ NH1 NH2 REMARK 470 HIS B 120 CG ND1 CD2 CE1 NE2 REMARK 470 VAL B 124 CG1 REMARK 470 SER B 133 OG REMARK 470 LEU B 137 CD1 CD2 REMARK 470 LEU B 141 CG CD1 CD2 REMARK 470 THR B 142 CG2 REMARK 470 GLU B 175 CD OE1 OE2 REMARK 470 ILE B 176 CG2 CD1 REMARK 470 THR B 183 OG1 CG2 REMARK 470 LYS B 185 CG CD CE NZ REMARK 470 ILE B 186 CG2 CD1 REMARK 470 VAL B 189 CB CG1 CG2 REMARK 470 GLU B 191 CG CD OE1 OE2 REMARK 470 LEU B 193 CD1 CD2 REMARK 470 ARG B 203 CD NE CZ NH1 NH2 REMARK 470 ARG B 206 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 207 OD1 ND2 REMARK 470 LEU B 208 CG CD1 CD2 REMARK 470 THR B 210 OG1 CG2 REMARK 470 GLN B 212 CG CD OE1 NE2 REMARK 470 ILE B 214 CG2 CD1 REMARK 470 ARG B 218 CD NE CZ NH1 NH2 REMARK 470 ILE B 228 CD1 REMARK 470 THR B 238 OG1 CG2 REMARK 470 SER B 245 OG REMARK 470 VAL B 248 CG1 CG2 REMARK 470 SER B 249 OG REMARK 470 PHE B 251 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU B 253 CG CD1 CD2 REMARK 470 ASP B 271 CG OD1 OD2 REMARK 470 ASP B 272 CG OD1 OD2 REMARK 470 LEU B 273 CG CD1 CD2 REMARK 470 ARG B 294 CG CD NE CZ NH1 NH2 REMARK 470 THR B 295 CG2 REMARK 470 LEU B 297 CD1 CD2 REMARK 470 ARG B 303 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 305 CD1 CD2 REMARK 470 SER B 311 OG REMARK 470 GLU B 338 CG CD OE1 OE2 REMARK 470 LEU B 339 CG CD1 CD2 REMARK 470 GLU B 342 CD OE1 OE2 REMARK 470 GLN B 346 CG CD OE1 NE2 REMARK 470 GLU B 349 CG CD OE1 OE2 REMARK 470 TRP B 350 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 350 CZ3 CH2 REMARK 470 LYS B 353 CD CE NZ REMARK 470 ARG B 362 CD NE CZ NH1 NH2 REMARK 470 SER B 369 OG REMARK 470 LYS B 410 CD CE NZ REMARK 470 LYS B 415 CD CE NZ REMARK 470 ARG B 431 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 432 CD OE1 OE2 REMARK 470 ARG B 460 CD NE CZ NH1 NH2 REMARK 470 ARG B 470 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 472 CD1 CD2 REMARK 470 GLU B 473 CD OE1 OE2 REMARK 470 LEU B 475 CD1 CD2 REMARK 470 SER B 477 OG REMARK 470 CYS B 481 SG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 55 46.91 -88.01 REMARK 500 SER A 103 -6.96 76.93 REMARK 500 TRP A 395 78.12 -118.95 REMARK 500 VAL B 189 22.09 -143.05 REMARK 500 ASN B 229 56.34 -93.40 REMARK 500 SER B 249 48.38 -86.69 REMARK 500 VAL B 359 -154.35 -129.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UDP A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UDP B 500 DBREF 6LG1 A 0 484 PDB 6LG1 6LG1 0 484 DBREF 6LG1 B 0 484 PDB 6LG1 6LG1 0 484 SEQRES 1 A 485 GLY MET ARG PRO GLY SER SER GLU ARG ASN HIS PRO ALA SEQRES 2 A 485 GLU ARG PRO THR THR ILE LEU SER GLY SER MET ALA PRO SEQRES 3 A 485 ALA ALA VAL PRO HIS VAL ALA LEU LEU PRO SER SER GLY SEQRES 4 A 485 MET GLY HIS LEU THR PRO PHE LEU ARG LEU ALA ALA ALA SEQRES 5 A 485 LEU ALA SER HIS GLY CYS VAL ILE THR PHE ILE THR PRO SEQRES 6 A 485 THR PRO VAL VAL SER ALA ALA GLU ALA ARG HIS VAL GLU SEQRES 7 A 485 ALA PHE ILE SER SER SER PRO LEU PHE ARG ARG LEU GLU SEQRES 8 A 485 PHE PRO LEU LEU PRO PHE ASP VAL SER SER VAL VAL SER SEQRES 9 A 485 ASP ASP PRO PHE PHE LEU GLN PHE GLU ARG ILE SER ARG SEQRES 10 A 485 SER ALA ARG HIS LEU GLY PRO VAL LEU SER SER VAL SER SEQRES 11 A 485 PRO PRO LEU SER ALA LEU ILE LEU ASP VAL THR LEU THR SEQRES 12 A 485 SER SER ILE LEU PRO ILE ALA ALA GLU ILE SER LEU PRO SEQRES 13 A 485 ALA TYR ILE LEU PHE THR SER SER ALA GLY MET LEU SER SEQRES 14 A 485 LEU CYS LEU SER TYR PRO GLU ILE ALA ALA SER GLY GLY SEQRES 15 A 485 VAL THR ILE LYS ILE PRO GLY VAL ALA GLU ASP LEU ALA SEQRES 16 A 485 PRO SER SER LEU PRO GLN PRO LEU ARG ASP PRO ARG ASN SEQRES 17 A 485 LEU PHE THR GLY GLN PHE ILE GLU ASN GLY ARG ALA MET SEQRES 18 A 485 ALA ARG ALA ASP GLY ILE ILE ILE ASN THR TRP GLU ALA SEQRES 19 A 485 LEU GLU PRO ALA THR LEU ALA ALA LEU GLN GLY SER LYS SEQRES 20 A 485 ALA VAL SER GLY PHE PRO LEU VAL ILE PRO VAL GLY PRO SEQRES 21 A 485 LEU LEU ALA ALA SER ASP ILE HIS THR ALA ALA ASP ASP SEQRES 22 A 485 LEU VAL ILE PRO TRP LEU ASP ALA GLN PRO ALA SER SER SEQRES 23 A 485 VAL VAL PHE VAL SER PHE GLY SER ARG THR ALA LEU SER SEQRES 24 A 485 ALA GLU GLN LEU ARG GLU LEU ALA ALA GLY LEU GLU SER SEQRES 25 A 485 SER GLY CYS ARG PHE LEU TRP VAL LEU LYS THR LYS LYS SEQRES 26 A 485 VAL ASP ARG GLU ASP GLN GLU GLY GLU LYS ALA VAL ASP SEQRES 27 A 485 GLU LEU LEU GLY GLU GLY PHE LEU GLN ARG VAL GLU TRP SEQRES 28 A 485 LYS GLY LYS VAL VAL SER GLY TRP VAL ASP GLN ARG ALA SEQRES 29 A 485 VAL LEU ASP HIS PRO SER VAL GLY GLY PHE VAL SER HIS SEQRES 30 A 485 CYS GLY TRP ASN SER VAL THR GLU ALA ALA LEU GLY GLY SEQRES 31 A 485 MET ARG VAL LEU ALA TRP PRO ARG HIS GLY ASP GLN ARG SEQRES 32 A 485 ILE ASN ALA MET VAL VAL GLU LYS SER GLY LEU GLY LYS SEQRES 33 A 485 TRP PRO SER LEU TRP THR TRP GLU GLY ASP ASP GLU ILE SEQRES 34 A 485 VAL ARG ARG GLU GLU ILE ALA GLY ARG VAL ALA GLU LEU SEQRES 35 A 485 MET ALA SER PRO ALA ALA ALA ALA ALA ALA ALA LYS VAL SEQRES 36 A 485 LYS GLU GLU ALA VAL ARG ALA ALA THR ALA GLY GLY SER SEQRES 37 A 485 SER GLN ARG GLN LEU GLU ASP LEU VAL SER ARG PHE THR SEQRES 38 A 485 CYS SER GLY ASP SEQRES 1 B 485 GLY MET ARG PRO GLY SER SER GLU ARG ASN HIS PRO ALA SEQRES 2 B 485 GLU ARG PRO THR THR ILE LEU SER GLY SER MET ALA PRO SEQRES 3 B 485 ALA ALA VAL PRO HIS VAL ALA LEU LEU PRO SER SER GLY SEQRES 4 B 485 MET GLY HIS LEU THR PRO PHE LEU ARG LEU ALA ALA ALA SEQRES 5 B 485 LEU ALA SER HIS GLY CYS VAL ILE THR PHE ILE THR PRO SEQRES 6 B 485 THR PRO VAL VAL SER ALA ALA GLU ALA ARG HIS VAL GLU SEQRES 7 B 485 ALA PHE ILE SER SER SER PRO LEU PHE ARG ARG LEU GLU SEQRES 8 B 485 PHE PRO LEU LEU PRO PHE ASP VAL SER SER VAL VAL SER SEQRES 9 B 485 ASP ASP PRO PHE PHE LEU GLN PHE GLU ARG ILE SER ARG SEQRES 10 B 485 SER ALA ARG HIS LEU GLY PRO VAL LEU SER SER VAL SER SEQRES 11 B 485 PRO PRO LEU SER ALA LEU ILE LEU ASP VAL THR LEU THR SEQRES 12 B 485 SER SER ILE LEU PRO ILE ALA ALA GLU ILE SER LEU PRO SEQRES 13 B 485 ALA TYR ILE LEU PHE THR SER SER ALA GLY MET LEU SER SEQRES 14 B 485 LEU CYS LEU SER TYR PRO GLU ILE ALA ALA SER GLY GLY SEQRES 15 B 485 VAL THR ILE LYS ILE PRO GLY VAL ALA GLU ASP LEU ALA SEQRES 16 B 485 PRO SER SER LEU PRO GLN PRO LEU ARG ASP PRO ARG ASN SEQRES 17 B 485 LEU PHE THR GLY GLN PHE ILE GLU ASN GLY ARG ALA MET SEQRES 18 B 485 ALA ARG ALA ASP GLY ILE ILE ILE ASN THR TRP GLU ALA SEQRES 19 B 485 LEU GLU PRO ALA THR LEU ALA ALA LEU GLN GLY SER LYS SEQRES 20 B 485 ALA VAL SER GLY PHE PRO LEU VAL ILE PRO VAL GLY PRO SEQRES 21 B 485 LEU LEU ALA ALA SER ASP ILE HIS THR ALA ALA ASP ASP SEQRES 22 B 485 LEU VAL ILE PRO TRP LEU ASP ALA GLN PRO ALA SER SER SEQRES 23 B 485 VAL VAL PHE VAL SER PHE GLY SER ARG THR ALA LEU SER SEQRES 24 B 485 ALA GLU GLN LEU ARG GLU LEU ALA ALA GLY LEU GLU SER SEQRES 25 B 485 SER GLY CYS ARG PHE LEU TRP VAL LEU LYS THR LYS LYS SEQRES 26 B 485 VAL ASP ARG GLU ASP GLN GLU GLY GLU LYS ALA VAL ASP SEQRES 27 B 485 GLU LEU LEU GLY GLU GLY PHE LEU GLN ARG VAL GLU TRP SEQRES 28 B 485 LYS GLY LYS VAL VAL SER GLY TRP VAL ASP GLN ARG ALA SEQRES 29 B 485 VAL LEU ASP HIS PRO SER VAL GLY GLY PHE VAL SER HIS SEQRES 30 B 485 CYS GLY TRP ASN SER VAL THR GLU ALA ALA LEU GLY GLY SEQRES 31 B 485 MET ARG VAL LEU ALA TRP PRO ARG HIS GLY ASP GLN ARG SEQRES 32 B 485 ILE ASN ALA MET VAL VAL GLU LYS SER GLY LEU GLY LYS SEQRES 33 B 485 TRP PRO SER LEU TRP THR TRP GLU GLY ASP ASP GLU ILE SEQRES 34 B 485 VAL ARG ARG GLU GLU ILE ALA GLY ARG VAL ALA GLU LEU SEQRES 35 B 485 MET ALA SER PRO ALA ALA ALA ALA ALA ALA ALA LYS VAL SEQRES 36 B 485 LYS GLU GLU ALA VAL ARG ALA ALA THR ALA GLY GLY SER SEQRES 37 B 485 SER GLN ARG GLN LEU GLU ASP LEU VAL SER ARG PHE THR SEQRES 38 B 485 CYS SER GLY ASP HET UDP A 500 25 HET UDP B 500 25 HETNAM UDP URIDINE-5'-DIPHOSPHATE FORMUL 3 UDP 2(C9 H14 N2 O12 P2) FORMUL 5 HOH *(H2 O) HELIX 1 AA1 GLY A 38 HIS A 55 1 18 HELIX 2 AA2 SER A 69 SER A 83 1 15 HELIX 3 AA3 ASP A 97 VAL A 101 5 5 HELIX 4 AA4 ASP A 105 SER A 117 1 13 HELIX 5 AA5 SER A 117 VAL A 128 1 12 HELIX 6 AA6 LEU A 141 ILE A 152 1 12 HELIX 7 AA7 SER A 163 ALA A 178 1 16 HELIX 8 AA8 ALA A 194 LEU A 198 5 5 HELIX 9 AA9 PRO A 199 ASP A 204 5 6 HELIX 10 AB1 ASN A 207 ALA A 223 1 17 HELIX 11 AB2 GLU A 235 LYS A 246 1 12 HELIX 12 AB3 LEU A 273 GLN A 281 1 9 HELIX 13 AB4 SER A 298 GLY A 313 1 16 HELIX 14 AB5 GLY A 343 VAL A 348 1 6 HELIX 15 AB6 ASP A 360 HIS A 367 1 8 HELIX 16 AB7 GLY A 378 GLY A 389 1 12 HELIX 17 AB8 ASP A 400 GLY A 412 1 13 HELIX 18 AB9 ARG A 430 SER A 444 1 15 HELIX 19 AC1 SER A 444 THR A 463 1 20 HELIX 20 AC2 GLY A 466 THR A 480 1 15 HELIX 21 AC3 GLY B 38 HIS B 55 1 18 HELIX 22 AC4 SER B 69 SER B 83 1 15 HELIX 23 AC5 ASP B 105 SER B 117 1 13 HELIX 24 AC6 SER B 117 VAL B 128 1 12 HELIX 25 AC7 LEU B 141 ILE B 152 1 12 HELIX 26 AC8 SER B 163 SER B 179 1 17 HELIX 27 AC9 ALA B 194 LEU B 198 5 5 HELIX 28 AD1 PRO B 199 ASP B 204 5 6 HELIX 29 AD2 ASN B 207 ALA B 223 1 17 HELIX 30 AD3 GLU B 235 SER B 245 1 11 HELIX 31 AD4 ALA B 269 LEU B 273 5 5 HELIX 32 AD5 VAL B 274 GLN B 281 1 8 HELIX 33 AD6 SER B 298 GLY B 313 1 16 HELIX 34 AD7 GLY B 343 GLU B 349 1 7 HELIX 35 AD8 ASP B 360 ASP B 366 1 7 HELIX 36 AD9 GLY B 378 GLY B 389 1 12 HELIX 37 AE1 ASP B 400 SER B 411 1 12 HELIX 38 AE2 ARG B 430 SER B 444 1 15 HELIX 39 AE3 SER B 444 THR B 463 1 20 HELIX 40 AE4 GLY B 466 THR B 480 1 15 SHEET 1 AA1 7 PHE A 86 PRO A 92 0 SHEET 2 AA1 7 VAL A 58 THR A 65 1 N PHE A 61 O ARG A 87 SHEET 3 AA1 7 HIS A 30 LEU A 34 1 N LEU A 33 O ILE A 62 SHEET 4 AA1 7 ALA A 134 ASP A 138 1 O ILE A 136 N ALA A 32 SHEET 5 AA1 7 ALA A 156 PHE A 160 1 O TYR A 157 N LEU A 137 SHEET 6 AA1 7 GLY A 225 ILE A 228 1 O ILE A 227 N PHE A 160 SHEET 7 AA1 7 VAL A 254 PRO A 256 1 O ILE A 255 N ILE A 226 SHEET 1 AA2 6 GLY A 352 VAL A 355 0 SHEET 2 AA2 6 ARG A 315 VAL A 319 1 N TRP A 318 O VAL A 355 SHEET 3 AA2 6 VAL A 286 SER A 290 1 N VAL A 287 O LEU A 317 SHEET 4 AA2 6 VAL A 370 SER A 375 1 O VAL A 374 N PHE A 288 SHEET 5 AA2 6 ARG A 391 ALA A 394 1 O ARG A 391 N PHE A 373 SHEET 6 AA2 6 GLY A 414 LYS A 415 1 O LYS A 415 N VAL A 392 SHEET 1 AA3 7 PHE B 86 PRO B 92 0 SHEET 2 AA3 7 VAL B 58 THR B 65 1 N THR B 65 O PHE B 91 SHEET 3 AA3 7 HIS B 30 LEU B 34 1 N LEU B 33 O ILE B 62 SHEET 4 AA3 7 ALA B 134 ASP B 138 1 O ILE B 136 N ALA B 32 SHEET 5 AA3 7 ALA B 156 PHE B 160 1 O TYR B 157 N LEU B 135 SHEET 6 AA3 7 GLY B 225 ILE B 228 1 O ILE B 227 N PHE B 160 SHEET 7 AA3 7 VAL B 254 PRO B 256 1 O ILE B 255 N ILE B 226 SHEET 1 AA4 2 LYS B 246 ALA B 247 0 SHEET 2 AA4 2 PHE B 251 PRO B 252 -1 O PHE B 251 N ALA B 247 SHEET 1 AA5 6 GLY B 352 VAL B 355 0 SHEET 2 AA5 6 ARG B 315 VAL B 319 1 N TRP B 318 O VAL B 355 SHEET 3 AA5 6 VAL B 286 SER B 290 1 N VAL B 287 O LEU B 317 SHEET 4 AA5 6 VAL B 370 SER B 375 1 O VAL B 374 N PHE B 288 SHEET 5 AA5 6 ARG B 391 ALA B 394 1 O LEU B 393 N SER B 375 SHEET 6 AA5 6 GLY B 414 LYS B 415 1 O LYS B 415 N ALA B 394 CISPEP 1 THR A 65 PRO A 66 0 8.93 CISPEP 2 SER A 129 PRO A 130 0 -3.77 CISPEP 3 GLY A 258 PRO A 259 0 13.85 CISPEP 4 THR B 65 PRO B 66 0 13.75 CISPEP 5 SER B 129 PRO B 130 0 -4.04 CISPEP 6 GLY B 258 PRO B 259 0 5.80 SITE 1 AC1 10 GLY A 40 SER A 293 TRP A 358 VAL A 359 SITE 2 AC1 10 GLN A 361 HIS A 376 GLY A 378 ASN A 380 SITE 3 AC1 10 SER A 381 GLU A 384 SITE 1 AC2 10 GLY B 40 SER B 293 TRP B 358 VAL B 359 SITE 2 AC2 10 GLN B 361 HIS B 376 GLY B 378 ASN B 380 SITE 3 AC2 10 SER B 381 GLU B 384 CRYST1 77.447 87.703 201.328 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012912 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011402 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004967 0.00000