HEADER TRANSPORT PROTEIN 06-DEC-19 6LGY TITLE CRYSTAL STRUCTURE OF A CYSTEINE-PAIR MUTANT (P10C-S291C) OF A TITLE 2 BACTERIAL BILE ACID TRANSPORTER IN AN INWARD-FACING STATE COMPLEXED TITLE 3 WITH GLYCINE AND SODIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSPORTER, SODIUM/BILE ACID SYMPORTER FAMILY; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA FREDERIKSENII; SOURCE 3 ORGANISM_TAXID: 29484; SOURCE 4 GENE: NCTC11470_02445; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BILE ACID TRANSPORTER, ASBT, NTCP, SLC10, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR X.WANG,Y.LYU,Y.JI,Z.SUN,X.ZHOU REVDAT 4 23-OCT-24 6LGY 1 REMARK REVDAT 3 22-NOV-23 6LGY 1 REMARK REVDAT 2 13-JAN-21 6LGY 1 JRNL REVDAT 1 09-DEC-20 6LGY 0 JRNL AUTH X.WANG,Y.LYU,Y.JI,Z.SUN,X.ZHOU JRNL TITL SUBSTRATE BINDING IN THE BILE ACID TRANSPORTER ASBT YF FROM JRNL TITL 2 YERSINIA FREDERIKSENII. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 77 117 2021 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 33404531 JRNL DOI 10.1107/S2059798320015004 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 15428 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.750 REMARK 3 FREE R VALUE TEST SET COUNT : 733 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.8000 - 3.8402 0.96 3008 133 0.2072 0.2279 REMARK 3 2 3.8402 - 3.0487 0.99 2964 152 0.2012 0.2402 REMARK 3 3 3.0487 - 2.6635 0.99 2895 159 0.2057 0.2447 REMARK 3 4 2.6635 - 2.4200 0.99 2942 129 0.2158 0.2504 REMARK 3 5 2.4200 - 2.2470 0.99 2886 160 0.2187 0.3020 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.58 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -4 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.3109 -19.9560 13.5707 REMARK 3 T TENSOR REMARK 3 T11: 0.5175 T22: 0.5241 REMARK 3 T33: 0.4340 T12: -0.0349 REMARK 3 T13: 0.0584 T23: -0.0895 REMARK 3 L TENSOR REMARK 3 L11: 1.7348 L22: 7.7316 REMARK 3 L33: 2.0852 L12: -0.0409 REMARK 3 L13: -0.3336 L23: -1.9940 REMARK 3 S TENSOR REMARK 3 S11: -0.1842 S12: -0.2607 S13: 0.4648 REMARK 3 S21: 1.0840 S22: 0.4861 S23: 0.2149 REMARK 3 S31: -0.3293 S32: -0.5108 S33: -0.2051 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 23 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.5892 -30.8447 1.0781 REMARK 3 T TENSOR REMARK 3 T11: 0.2745 T22: 0.3685 REMARK 3 T33: 0.4044 T12: -0.0364 REMARK 3 T13: 0.0269 T23: -0.0335 REMARK 3 L TENSOR REMARK 3 L11: 1.8411 L22: 2.2005 REMARK 3 L33: 1.7733 L12: -0.4213 REMARK 3 L13: 0.6081 L23: -0.6651 REMARK 3 S TENSOR REMARK 3 S11: 0.0662 S12: -0.2273 S13: -0.2456 REMARK 3 S21: -0.0094 S22: -0.0605 S23: 0.4579 REMARK 3 S31: 0.2892 S32: -0.3737 S33: -0.0384 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 49 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.5279 -23.2924 -5.0174 REMARK 3 T TENSOR REMARK 3 T11: 0.3745 T22: 0.3579 REMARK 3 T33: 0.3332 T12: 0.0273 REMARK 3 T13: 0.0207 T23: -0.0195 REMARK 3 L TENSOR REMARK 3 L11: 1.8116 L22: 1.3470 REMARK 3 L33: 1.1184 L12: 0.6979 REMARK 3 L13: -0.1720 L23: 0.0521 REMARK 3 S TENSOR REMARK 3 S11: -0.0876 S12: -0.0221 S13: -0.0995 REMARK 3 S21: -0.0177 S22: 0.1145 S23: -0.0528 REMARK 3 S31: -0.0140 S32: -0.0302 S33: -0.0420 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 145 THROUGH 178 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.4748 -29.9207 -12.8164 REMARK 3 T TENSOR REMARK 3 T11: 0.4840 T22: 0.4329 REMARK 3 T33: 0.3985 T12: 0.0196 REMARK 3 T13: -0.0141 T23: 0.0182 REMARK 3 L TENSOR REMARK 3 L11: 3.6165 L22: 2.8598 REMARK 3 L33: 0.9715 L12: -2.1877 REMARK 3 L13: -0.2599 L23: 0.2717 REMARK 3 S TENSOR REMARK 3 S11: 0.2295 S12: 0.3521 S13: 0.4085 REMARK 3 S21: -0.3798 S22: -0.2273 S23: -0.0287 REMARK 3 S31: 0.0635 S32: -0.1772 S33: -0.0289 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 179 THROUGH 208 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.3413 -21.0466 1.8542 REMARK 3 T TENSOR REMARK 3 T11: 0.3470 T22: 0.4203 REMARK 3 T33: 0.4712 T12: -0.0416 REMARK 3 T13: 0.0343 T23: -0.0338 REMARK 3 L TENSOR REMARK 3 L11: 1.2442 L22: 4.3526 REMARK 3 L33: 2.9691 L12: -2.1820 REMARK 3 L13: 1.7738 L23: -2.8936 REMARK 3 S TENSOR REMARK 3 S11: 0.1647 S12: -0.1586 S13: 0.2605 REMARK 3 S21: -0.3817 S22: -0.3133 S23: -0.0547 REMARK 3 S31: 0.4974 S32: 0.0790 S33: 0.1036 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 209 THROUGH 273 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.9673 -26.2709 2.9419 REMARK 3 T TENSOR REMARK 3 T11: 0.3672 T22: 0.3805 REMARK 3 T33: 0.3319 T12: 0.0270 REMARK 3 T13: 0.0114 T23: -0.0013 REMARK 3 L TENSOR REMARK 3 L11: 1.0109 L22: 1.3006 REMARK 3 L33: 0.7672 L12: 0.2499 REMARK 3 L13: 0.3979 L23: -0.0087 REMARK 3 S TENSOR REMARK 3 S11: 0.0037 S12: 0.0277 S13: -0.0533 REMARK 3 S21: 0.1183 S22: 0.0560 S23: -0.1396 REMARK 3 S31: 0.0269 S32: -0.0448 S33: -0.0116 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 274 THROUGH 306 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.5313 -18.8266 8.8728 REMARK 3 T TENSOR REMARK 3 T11: 0.4261 T22: 0.3775 REMARK 3 T33: 0.3806 T12: 0.0084 REMARK 3 T13: 0.0349 T23: 0.0072 REMARK 3 L TENSOR REMARK 3 L11: 1.0935 L22: 3.6277 REMARK 3 L33: 1.7068 L12: 0.2643 REMARK 3 L13: 0.7127 L23: 0.3147 REMARK 3 S TENSOR REMARK 3 S11: 0.0303 S12: -0.1443 S13: 0.1446 REMARK 3 S21: -0.1043 S22: -0.1643 S23: -0.1222 REMARK 3 S31: -0.2773 S32: -0.1556 S33: 0.1575 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 401 THROUGH 401 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.8530 -26.7040 1.7969 REMARK 3 T TENSOR REMARK 3 T11: 0.4654 T22: 0.9847 REMARK 3 T33: 0.6325 T12: -0.0449 REMARK 3 T13: -0.1479 T23: -0.4148 REMARK 3 L TENSOR REMARK 3 L11: 2.0000 L22: 2.0000 REMARK 3 L33: 2.0000 L12: 2.0000 REMARK 3 L13: 2.0000 L23: 2.0000 REMARK 3 S TENSOR REMARK 3 S11: -1.3299 S12: 2.0422 S13: -0.4839 REMARK 3 S21: 2.6894 S22: 6.9753 S23: -10.5641 REMARK 3 S31: -4.1909 S32: 13.4792 S33: -5.6632 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6LGY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-DEC-19. REMARK 100 THE DEPOSITION ID IS D_1300014755. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-APR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97853 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15449 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.247 REMARK 200 RESOLUTION RANGE LOW (A) : 38.066 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.11400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.91900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6LGV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05 M NA2SO4, 0.05 M LI2SO4, 0.05 M REMARK 280 TRIS-HCL PH 8.5, 35% PEG 400, 0.8 MM CHAPSO, WITH 100 MM GLYCINE REMARK 280 PH 7.3 SOAKING, LIPIDIC CUBIC PHASE, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.54050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.54050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 22.73450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 92.78900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 22.73450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 92.78900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 37.54050 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 22.73450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 92.78900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 37.54050 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 22.73450 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 92.78900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 515 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 307 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 178 57.96 -104.49 REMARK 500 PHE A 271 -69.92 -135.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 403 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 104 OG REMARK 620 2 GLY A 105 O 87.5 REMARK 620 3 SER A 108 OG 86.2 88.1 REMARK 620 4 SER A 126 OG 84.1 168.5 83.6 REMARK 620 5 HOH A 504 O 171.0 95.3 85.3 91.8 REMARK 620 6 HOH A 532 O 93.3 91.0 179.0 97.2 95.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 402 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 254 O REMARK 620 2 VAL A 255 O 97.5 REMARK 620 3 MET A 257 O 87.0 118.3 REMARK 620 4 GLN A 258 OE1 166.0 96.5 85.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GLY A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2PE A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue A6L A 405 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6LGV RELATED DB: PDB REMARK 900 6LGV CONTAINS THE SAME PROTEIN COMPLEXED WITH CITRATE. DBREF1 6LGY A 1 307 UNP A0A380PV03_YERFR DBREF2 6LGY A A0A380PV03 1 307 SEQADV 6LGY ARG A -4 UNP A0A380PV0 EXPRESSION TAG SEQADV 6LGY ALA A -3 UNP A0A380PV0 EXPRESSION TAG SEQADV 6LGY HIS A -2 UNP A0A380PV0 EXPRESSION TAG SEQADV 6LGY HIS A -1 UNP A0A380PV0 EXPRESSION TAG SEQADV 6LGY HIS A 0 UNP A0A380PV0 EXPRESSION TAG SEQADV 6LGY CYS A 10 UNP A0A380PV0 PRO 10 ENGINEERED MUTATION SEQADV 6LGY CYS A 291 UNP A0A380PV0 SER 291 ENGINEERED MUTATION SEQRES 1 A 312 ARG ALA HIS HIS HIS MET LEU VAL LYS ILE THR ARG LEU SEQRES 2 A 312 PHE CYS VAL TRP ALA LEU LEU LEU SER VAL ALA ALA TYR SEQRES 3 A 312 PHE ARG PRO THR THR PHE THR GLY ILE GLY PRO TYR VAL SEQRES 4 A 312 GLY PRO LEU LEU MET LEU ILE MET PHE ALA MET GLY VAL SEQRES 5 A 312 THR LEU ARG LEU ASP ASP PHE LYS ARG VAL LEU SER ARG SEQRES 6 A 312 PRO ALA PRO VAL ALA ALA ALA THR PHE LEU HIS TYR LEU SEQRES 7 A 312 ILE MET PRO LEU THR ALA TRP ILE LEU ALA MET LEU PHE SEQRES 8 A 312 ARG MET PRO PRO ASP LEU SER ALA GLY MET VAL LEU VAL SEQRES 9 A 312 GLY SER VAL ALA SER GLY THR ALA SER ASN VAL MET ILE SEQRES 10 A 312 TYR LEU ALA LYS GLY ASP VAL ALA LEU SER VAL THR ILE SEQRES 11 A 312 SER ALA VAL SER THR LEU VAL GLY VAL PHE ALA THR PRO SEQRES 12 A 312 LEU LEU THR ARG LEU TYR VAL ASP ALA THR ILE SER VAL SEQRES 13 A 312 ASP VAL VAL GLY MET LEU LYS SER ILE LEU GLN ILE VAL SEQRES 14 A 312 VAL ILE PRO ILE THR ALA GLY LEU VAL ILE HIS HIS THR SEQRES 15 A 312 PHE THR LYS THR VAL LYS ARG ILE GLU PRO TYR LEU PRO SEQRES 16 A 312 ALA MET SER MET VAL CYS ILE LEU ALA ILE ILE SER ALA SEQRES 17 A 312 VAL VAL ALA GLY SER GLN SER HIS ILE ALA SER VAL GLY SEQRES 18 A 312 PHE VAL VAL ILE ILE ALA VAL ILE LEU HIS ASN GLY ILE SEQRES 19 A 312 GLY LEU LEU SER GLY TYR TRP GLY GLY LYS LEU PHE GLY SEQRES 20 A 312 PHE ASP GLU SER THR CYS ARG THR LEU ALA ILE GLU VAL SEQRES 21 A 312 GLY MET GLN ASN SER GLY LEU ALA ALA THR LEU GLY LYS SEQRES 22 A 312 ILE TYR PHE SER PRO LEU ALA ALA LEU PRO GLY ALA LEU SEQRES 23 A 312 PHE SER VAL TRP HIS ASN LEU SER GLY CYS LEU LEU ALA SEQRES 24 A 312 GLY TYR TRP SER GLY LYS PRO VAL LYS LYS ASP GLN GLU HET GLY A 401 5 HET NA A 402 1 HET NA A 403 1 HET 2PE A 404 28 HET A6L A 405 25 HETNAM GLY GLYCINE HETNAM NA SODIUM ION HETNAM 2PE NONAETHYLENE GLYCOL HETNAM A6L 2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETSYN A6L MONOOLEIN FORMUL 2 GLY C2 H5 N O2 FORMUL 3 NA 2(NA 1+) FORMUL 5 2PE C18 H38 O10 FORMUL 6 A6L C21 H40 O4 FORMUL 7 HOH *47(H2 O) HELIX 1 AA1 ARG A -4 ARG A 23 1 28 HELIX 2 AA2 PRO A 24 PRO A 32 5 9 HELIX 3 AA3 TYR A 33 LEU A 49 1 17 HELIX 4 AA4 ARG A 50 ARG A 60 1 11 HELIX 5 AA5 ARG A 60 PHE A 86 1 27 HELIX 6 AA6 PRO A 89 VAL A 102 1 14 HELIX 7 AA7 ALA A 107 ALA A 115 1 9 HELIX 8 AA8 ASP A 118 VAL A 145 1 28 HELIX 9 AA9 ASP A 152 VAL A 164 1 13 HELIX 10 AB1 VAL A 164 PHE A 178 1 15 HELIX 11 AB2 PHE A 178 GLU A 186 1 9 HELIX 12 AB3 TYR A 188 SER A 208 1 21 HELIX 13 AB4 SER A 208 PHE A 241 1 34 HELIX 14 AB5 ASP A 244 MET A 257 1 14 HELIX 15 AB6 ASN A 259 PHE A 271 1 13 HELIX 16 AB7 PRO A 273 ALA A 275 5 3 HELIX 17 AB8 ALA A 276 GLY A 299 1 24 SSBOND 1 CYS A 10 CYS A 291 1555 1555 1.99 LINK OG SER A 104 NA NA A 403 1555 1555 2.43 LINK O GLY A 105 NA NA A 403 1555 1555 2.31 LINK OG SER A 108 NA NA A 403 1555 1555 2.44 LINK OG SER A 126 NA NA A 403 1555 1555 2.54 LINK O GLU A 254 NA NA A 402 1555 1555 2.34 LINK O VAL A 255 NA NA A 402 1555 1555 2.28 LINK O MET A 257 NA NA A 402 1555 1555 2.20 LINK OE1 GLN A 258 NA NA A 402 1555 1555 2.26 LINK NA NA A 403 O HOH A 504 1555 1555 2.39 LINK NA NA A 403 O HOH A 532 1555 1555 2.39 SITE 1 AC1 7 THR A 106 GLN A 258 ASN A 259 GLY A 261 SITE 2 AC1 7 HIS A 286 ASN A 287 HOH A 521 SITE 1 AC2 5 HIS A 71 GLU A 254 VAL A 255 MET A 257 SITE 2 AC2 5 GLN A 258 SITE 1 AC3 6 SER A 104 GLY A 105 SER A 108 SER A 126 SITE 2 AC3 6 HOH A 504 HOH A 532 SITE 1 AC4 13 THR A 28 GLY A 31 PRO A 90 ASP A 146 SITE 2 AC4 13 ALA A 203 GLY A 207 HIS A 211 THR A 265 SITE 3 AC4 13 LYS A 268 SER A 272 PRO A 273 LEU A 274 SITE 4 AC4 13 ALA A 276 SITE 1 AC5 8 GLY A 228 ILE A 229 LEU A 232 TYR A 235 SITE 2 AC5 8 TRP A 236 TYR A 296 TRP A 297 LYS A 300 CRYST1 45.469 185.578 75.081 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021993 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005389 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013319 0.00000