HEADER HYDROLASE 07-DEC-19 6LHE TITLE CRYSTAL STRUCTURE OF GOLD-BOUND NDM-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: METALLO-BETA-LACTAMASE TYPE 2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: B2 METALLO-BETA-LACTAMASE,BETA-LACTAMASE TYPE II,METALLO- COMPND 5 BETA-LACTAMASE NDM-1,METALLO-BETA-LACTAMASE TYPE II,NEW DELHI COMPND 6 METALLO-BETA-LACTAMASE-1,NDM-1; COMPND 7 EC: 3.5.2.6; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 573; SOURCE 4 GENE: BLANDM-1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS HYDROLASE, GOLD EXPDTA X-RAY DIFFRACTION AUTHOR H.WANG,H.SUN,M.WANG REVDAT 3 22-NOV-23 6LHE 1 REMARK REVDAT 2 28-OCT-20 6LHE 1 JRNL REVDAT 1 16-SEP-20 6LHE 0 JRNL AUTH H.SUN,Q.ZHANG,R.WANG,H.WANG,Y.T.WONG,M.WANG,Q.HAO,A.YAN, JRNL AUTH 2 R.Y.KAO,P.L.HO,H.LI JRNL TITL RESENSITIZING CARBAPENEM- AND COLISTIN-RESISTANT BACTERIA TO JRNL TITL 2 ANTIBIOTICS USING AURANOFIN. JRNL REF NAT COMMUN V. 11 5263 2020 JRNL REFN ESSN 2041-1723 JRNL PMID 33067430 JRNL DOI 10.1038/S41467-020-18939-Y REMARK 2 REMARK 2 RESOLUTION. 1.21 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260:000 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.21 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.020 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 239737 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.360 REMARK 3 FREE R VALUE TEST SET COUNT : 12861 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 50.9530 - 3.7454 0.94 7183 407 0.1791 0.1964 REMARK 3 2 3.7454 - 2.9729 0.99 7474 515 0.1580 0.1702 REMARK 3 3 2.9729 - 2.5971 1.00 7562 462 0.1695 0.1793 REMARK 3 4 2.5971 - 2.3597 1.00 7547 507 0.1673 0.1878 REMARK 3 5 2.3597 - 2.1905 1.00 7634 409 0.1605 0.1777 REMARK 3 6 2.1905 - 2.0614 1.00 7551 441 0.1637 0.1779 REMARK 3 7 2.0614 - 1.9581 1.00 7625 429 0.1586 0.2026 REMARK 3 8 1.9581 - 1.8729 1.00 7657 406 0.1694 0.1731 REMARK 3 9 1.8729 - 1.8008 1.00 7574 471 0.1734 0.1843 REMARK 3 10 1.8008 - 1.7387 0.99 7543 461 0.1744 0.1947 REMARK 3 11 1.7387 - 1.6843 1.00 7526 496 0.1730 0.1769 REMARK 3 12 1.6843 - 1.6361 1.00 7606 432 0.1781 0.1988 REMARK 3 13 1.6361 - 1.5931 1.00 7681 371 0.1833 0.1827 REMARK 3 14 1.5931 - 1.5542 1.00 7645 388 0.1791 0.1923 REMARK 3 15 1.5542 - 1.5189 0.99 7579 448 0.1847 0.2066 REMARK 3 16 1.5189 - 1.4865 1.00 7598 418 0.1862 0.1928 REMARK 3 17 1.4865 - 1.4568 1.00 7519 477 0.1850 0.1896 REMARK 3 18 1.4568 - 1.4293 1.00 7694 402 0.1893 0.2183 REMARK 3 19 1.4293 - 1.4038 1.00 7642 396 0.1962 0.2345 REMARK 3 20 1.4038 - 1.3800 1.00 7583 372 0.1980 0.2104 REMARK 3 21 1.3800 - 1.3577 1.00 7661 393 0.1993 0.2271 REMARK 3 22 1.3577 - 1.3368 1.00 7597 418 0.2037 0.2205 REMARK 3 23 1.3368 - 1.3172 1.00 7624 395 0.2039 0.2259 REMARK 3 24 1.3172 - 1.2986 1.00 7583 462 0.2081 0.2143 REMARK 3 25 1.2986 - 1.2811 1.00 7554 442 0.2095 0.2205 REMARK 3 26 1.2811 - 1.2644 1.00 7630 394 0.2150 0.2239 REMARK 3 27 1.2644 - 1.2486 0.97 7373 433 0.2334 0.2359 REMARK 3 28 1.2486 - 1.2336 0.96 7348 397 0.2452 0.2565 REMARK 3 29 1.2336 - 1.2192 0.98 7524 404 0.2756 0.2920 REMARK 3 30 1.2192 - 1.2060 0.99 7559 415 0.2779 0.2805 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.100 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 42 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.3793 14.1545 -21.6567 REMARK 3 T TENSOR REMARK 3 T11: 0.2050 T22: 0.1987 REMARK 3 T33: 0.1777 T12: -0.0037 REMARK 3 T13: -0.0119 T23: 0.0234 REMARK 3 L TENSOR REMARK 3 L11: 0.0267 L22: 0.0537 REMARK 3 L33: 0.0453 L12: -0.0301 REMARK 3 L13: -0.0223 L23: 0.0070 REMARK 3 S TENSOR REMARK 3 S11: 0.0607 S12: 0.0632 S13: 0.1132 REMARK 3 S21: -0.0442 S22: -0.0500 S23: -0.0334 REMARK 3 S31: -0.2080 S32: -0.0187 S33: -0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 58 THROUGH 118 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.0595 8.5485 -14.4085 REMARK 3 T TENSOR REMARK 3 T11: 0.1265 T22: 0.1368 REMARK 3 T33: 0.1337 T12: -0.0014 REMARK 3 T13: -0.0167 T23: 0.0034 REMARK 3 L TENSOR REMARK 3 L11: 0.1297 L22: 0.2145 REMARK 3 L33: 0.2431 L12: -0.0673 REMARK 3 L13: 0.0558 L23: 0.0670 REMARK 3 S TENSOR REMARK 3 S11: -0.0543 S12: 0.0178 S13: 0.0195 REMARK 3 S21: 0.0064 S22: -0.0042 S23: 0.0033 REMARK 3 S31: -0.0813 S32: 0.0241 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 119 THROUGH 255 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.9228 -6.4586 -17.3482 REMARK 3 T TENSOR REMARK 3 T11: 0.1192 T22: 0.1441 REMARK 3 T33: 0.1160 T12: 0.0055 REMARK 3 T13: -0.0057 T23: 0.0027 REMARK 3 L TENSOR REMARK 3 L11: 0.1572 L22: 0.3645 REMARK 3 L33: 0.3589 L12: -0.0730 REMARK 3 L13: 0.0235 L23: -0.1275 REMARK 3 S TENSOR REMARK 3 S11: -0.0034 S12: 0.0194 S13: -0.0008 REMARK 3 S21: 0.0049 S22: -0.0095 S23: -0.0204 REMARK 3 S31: 0.0214 S32: 0.0161 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 256 THROUGH 270 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.6556 -11.6156 -31.9746 REMARK 3 T TENSOR REMARK 3 T11: 0.1879 T22: 0.2031 REMARK 3 T33: 0.1300 T12: 0.0388 REMARK 3 T13: 0.0348 T23: 0.0171 REMARK 3 L TENSOR REMARK 3 L11: 0.0951 L22: 0.1101 REMARK 3 L33: 0.0244 L12: 0.1014 REMARK 3 L13: 0.0310 L23: 0.0325 REMARK 3 S TENSOR REMARK 3 S11: -0.0822 S12: 0.0004 S13: -0.0178 REMARK 3 S21: -0.1466 S22: 0.0129 S23: 0.0076 REMARK 3 S31: 0.1623 S32: 0.1134 S33: -0.0077 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 43 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.3305 -48.5208 -1.3020 REMARK 3 T TENSOR REMARK 3 T11: 0.1873 T22: 0.1315 REMARK 3 T33: 0.1899 T12: 0.0074 REMARK 3 T13: -0.0446 T23: -0.0064 REMARK 3 L TENSOR REMARK 3 L11: 0.1920 L22: 0.0366 REMARK 3 L33: 0.4596 L12: 0.0172 REMARK 3 L13: -0.2532 L23: 0.0437 REMARK 3 S TENSOR REMARK 3 S11: 0.1705 S12: -0.0446 S13: 0.0141 REMARK 3 S21: -0.0408 S22: 0.0985 S23: 0.0699 REMARK 3 S31: -0.1655 S32: 0.1707 S33: 0.0245 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 58 THROUGH 118 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.4471 -43.0064 -6.3428 REMARK 3 T TENSOR REMARK 3 T11: 0.1570 T22: 0.1179 REMARK 3 T33: 0.2191 T12: -0.0023 REMARK 3 T13: -0.0451 T23: -0.0054 REMARK 3 L TENSOR REMARK 3 L11: 0.1306 L22: 0.2029 REMARK 3 L33: 0.1975 L12: -0.0678 REMARK 3 L13: 0.0927 L23: -0.0333 REMARK 3 S TENSOR REMARK 3 S11: 0.0632 S12: 0.0236 S13: -0.0465 REMARK 3 S21: -0.0830 S22: 0.0300 S23: 0.1741 REMARK 3 S31: 0.0736 S32: 0.0590 S33: 0.0042 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 119 THROUGH 255 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.0535 -28.2391 -5.9284 REMARK 3 T TENSOR REMARK 3 T11: 0.1329 T22: 0.1335 REMARK 3 T33: 0.1463 T12: -0.0011 REMARK 3 T13: -0.0277 T23: 0.0017 REMARK 3 L TENSOR REMARK 3 L11: 0.2446 L22: 0.7567 REMARK 3 L33: 0.1606 L12: -0.1989 REMARK 3 L13: 0.2006 L23: -0.1046 REMARK 3 S TENSOR REMARK 3 S11: 0.0467 S12: -0.0133 S13: -0.0378 REMARK 3 S21: -0.0746 S22: 0.0029 S23: 0.0869 REMARK 3 S31: 0.0318 S32: 0.0402 S33: 0.0092 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 256 THROUGH 270 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.6371 -24.3357 1.2442 REMARK 3 T TENSOR REMARK 3 T11: 0.1273 T22: 0.1505 REMARK 3 T33: 0.1687 T12: 0.0124 REMARK 3 T13: -0.0273 T23: 0.0097 REMARK 3 L TENSOR REMARK 3 L11: 0.0195 L22: 0.0012 REMARK 3 L33: 0.0235 L12: -0.0051 REMARK 3 L13: 0.0215 L23: -0.0057 REMARK 3 S TENSOR REMARK 3 S11: -0.0465 S12: 0.1158 S13: 0.0678 REMARK 3 S21: -0.0578 S22: 0.0442 S23: -0.0010 REMARK 3 S31: 0.0481 S32: -0.0791 S33: -0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE ENTRY CONTAINS FRIEDEL PAIRS IN REMARK 3 F_PLUS/MINUS COLUMNS REMARK 4 REMARK 4 6LHE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-DEC-19. REMARK 100 THE DEPOSITION ID IS D_1300014777. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 239737 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.206 REMARK 200 RESOLUTION RANGE LOW (A) : 70.470 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 12.50 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.21 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 9.90 REMARK 200 R MERGE FOR SHELL (I) : 0.71200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5ZGE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350 20%, 0.1M AMMONIUM SULFATE, REMARK 280 0.1M MES PH 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.23500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.86000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.88000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 38.86000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.23500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.88000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 29 REMARK 465 GLU A 30 REMARK 465 ILE A 31 REMARK 465 ARG A 32 REMARK 465 PRO A 33 REMARK 465 THR A 34 REMARK 465 ILE A 35 REMARK 465 GLY A 36 REMARK 465 GLN A 37 REMARK 465 GLN A 38 REMARK 465 MET A 39 REMARK 465 GLU A 40 REMARK 465 THR A 41 REMARK 465 PRO A 68 REMARK 465 GLY A 69 REMARK 465 PHE A 70 REMARK 465 GLY B 29 REMARK 465 GLU B 30 REMARK 465 ILE B 31 REMARK 465 ARG B 32 REMARK 465 PRO B 33 REMARK 465 THR B 34 REMARK 465 ILE B 35 REMARK 465 GLY B 36 REMARK 465 GLN B 37 REMARK 465 GLN B 38 REMARK 465 MET B 39 REMARK 465 GLU B 40 REMARK 465 THR B 41 REMARK 465 GLY B 42 REMARK 465 MET B 67 REMARK 465 PRO B 68 REMARK 465 GLY B 69 REMARK 465 PHE B 70 REMARK 465 GLY B 71 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 66 CG OD1 OD2 REMARK 470 MET A 67 CG SD CE REMARK 470 LYS A 242 CE NZ REMARK 470 ARG A 270 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 66 CG OD1 OD2 REMARK 470 LYS B 216 CG CD CE NZ REMARK 470 LYS B 242 CE NZ REMARK 470 ARG B 270 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 90 141.93 75.93 REMARK 500 ASP B 90 143.00 74.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 607 DISTANCE = 6.56 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AU A 303 AU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 120 NE2 REMARK 620 2 HIS A 122 ND1 96.9 REMARK 620 3 HIS A 189 NE2 99.6 117.8 REMARK 620 4 HOH A 436 O 167.9 90.1 85.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AU A 302 AU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 124 OD2 REMARK 620 2 CYS A 208 SG 99.1 REMARK 620 3 HIS A 250 NE2 84.1 108.0 REMARK 620 4 HOH A 568 O 121.8 131.0 102.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AU A 301 AU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 152 OE1 REMARK 620 2 GLU A 152 OE2 53.8 REMARK 620 3 ASP A 223 OD2 91.9 96.7 REMARK 620 4 HOH A 557 O 92.0 141.2 102.9 REMARK 620 5 GLU B 227 OE1 140.9 87.4 87.8 126.2 REMARK 620 6 GLU B 227 OE2 118.1 83.9 141.0 100.5 53.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AU B 301 AU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 227 OE1 REMARK 620 2 GLU A 227 OE2 53.5 REMARK 620 3 GLU B 152 OE1 143.4 120.9 REMARK 620 4 GLU B 152 OE2 90.3 87.1 53.5 REMARK 620 5 ASP B 223 OD2 90.8 143.9 90.1 99.4 REMARK 620 6 HOH B 548 O 124.9 96.6 90.6 138.3 101.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AU B 303 AU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 120 NE2 REMARK 620 2 HIS B 122 ND1 92.0 REMARK 620 3 HIS B 189 NE2 90.5 120.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AU B 302 AU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 124 OD2 REMARK 620 2 CYS B 208 SG 98.2 REMARK 620 3 HIS B 250 NE2 86.2 108.6 REMARK 620 4 HOH B 560 O 124.1 127.7 103.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AU A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AU A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AU A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AU B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AU B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AU B 303 DBREF 6LHE A 29 270 UNP C7C422 BLAN1_KLEPN 29 270 DBREF 6LHE B 29 270 UNP C7C422 BLAN1_KLEPN 29 270 SEQRES 1 A 242 GLY GLU ILE ARG PRO THR ILE GLY GLN GLN MET GLU THR SEQRES 2 A 242 GLY ASP GLN ARG PHE GLY ASP LEU VAL PHE ARG GLN LEU SEQRES 3 A 242 ALA PRO ASN VAL TRP GLN HIS THR SER TYR LEU ASP MET SEQRES 4 A 242 PRO GLY PHE GLY ALA VAL ALA SER ASN GLY LEU ILE VAL SEQRES 5 A 242 ARG ASP GLY GLY ARG VAL LEU VAL VAL ASP THR ALA TRP SEQRES 6 A 242 THR ASP ASP GLN THR ALA GLN ILE LEU ASN TRP ILE LYS SEQRES 7 A 242 GLN GLU ILE ASN LEU PRO VAL ALA LEU ALA VAL VAL THR SEQRES 8 A 242 HIS ALA HIS GLN ASP LYS MET GLY GLY MET ASP ALA LEU SEQRES 9 A 242 HIS ALA ALA GLY ILE ALA THR TYR ALA ASN ALA LEU SER SEQRES 10 A 242 ASN GLN LEU ALA PRO GLN GLU GLY MET VAL ALA ALA GLN SEQRES 11 A 242 HIS SER LEU THR PHE ALA ALA ASN GLY TRP VAL GLU PRO SEQRES 12 A 242 ALA THR ALA PRO ASN PHE GLY PRO LEU LYS VAL PHE TYR SEQRES 13 A 242 PRO GLY PRO GLY HIS THR SER ASP ASN ILE THR VAL GLY SEQRES 14 A 242 ILE ASP GLY THR ASP ILE ALA PHE GLY GLY CYS LEU ILE SEQRES 15 A 242 LYS ASP SER LYS ALA LYS SER LEU GLY ASN LEU GLY ASP SEQRES 16 A 242 ALA ASP THR GLU HIS TYR ALA ALA SER ALA ARG ALA PHE SEQRES 17 A 242 GLY ALA ALA PHE PRO LYS ALA SER MET ILE VAL MET SER SEQRES 18 A 242 HIS SER ALA PRO ASP SER ARG ALA ALA ILE THR HIS THR SEQRES 19 A 242 ALA ARG MET ALA ASP LYS LEU ARG SEQRES 1 B 242 GLY GLU ILE ARG PRO THR ILE GLY GLN GLN MET GLU THR SEQRES 2 B 242 GLY ASP GLN ARG PHE GLY ASP LEU VAL PHE ARG GLN LEU SEQRES 3 B 242 ALA PRO ASN VAL TRP GLN HIS THR SER TYR LEU ASP MET SEQRES 4 B 242 PRO GLY PHE GLY ALA VAL ALA SER ASN GLY LEU ILE VAL SEQRES 5 B 242 ARG ASP GLY GLY ARG VAL LEU VAL VAL ASP THR ALA TRP SEQRES 6 B 242 THR ASP ASP GLN THR ALA GLN ILE LEU ASN TRP ILE LYS SEQRES 7 B 242 GLN GLU ILE ASN LEU PRO VAL ALA LEU ALA VAL VAL THR SEQRES 8 B 242 HIS ALA HIS GLN ASP LYS MET GLY GLY MET ASP ALA LEU SEQRES 9 B 242 HIS ALA ALA GLY ILE ALA THR TYR ALA ASN ALA LEU SER SEQRES 10 B 242 ASN GLN LEU ALA PRO GLN GLU GLY MET VAL ALA ALA GLN SEQRES 11 B 242 HIS SER LEU THR PHE ALA ALA ASN GLY TRP VAL GLU PRO SEQRES 12 B 242 ALA THR ALA PRO ASN PHE GLY PRO LEU LYS VAL PHE TYR SEQRES 13 B 242 PRO GLY PRO GLY HIS THR SER ASP ASN ILE THR VAL GLY SEQRES 14 B 242 ILE ASP GLY THR ASP ILE ALA PHE GLY GLY CYS LEU ILE SEQRES 15 B 242 LYS ASP SER LYS ALA LYS SER LEU GLY ASN LEU GLY ASP SEQRES 16 B 242 ALA ASP THR GLU HIS TYR ALA ALA SER ALA ARG ALA PHE SEQRES 17 B 242 GLY ALA ALA PHE PRO LYS ALA SER MET ILE VAL MET SER SEQRES 18 B 242 HIS SER ALA PRO ASP SER ARG ALA ALA ILE THR HIS THR SEQRES 19 B 242 ALA ARG MET ALA ASP LYS LEU ARG HET AU A 301 1 HET AU A 302 1 HET AU A 303 1 HET SO4 A 304 5 HET SO4 A 305 5 HET AU B 301 1 HET AU B 302 1 HET AU B 303 1 HETNAM AU GOLD ION HETNAM SO4 SULFATE ION FORMUL 3 AU 6(AU 1+) FORMUL 6 SO4 2(O4 S 2-) FORMUL 11 HOH *417(H2 O) HELIX 1 AA1 THR A 94 ILE A 109 1 16 HELIX 2 AA2 HIS A 122 GLY A 127 1 6 HELIX 3 AA3 GLY A 128 ALA A 135 1 8 HELIX 4 AA4 ALA A 143 ALA A 149 1 7 HELIX 5 AA5 GLU A 170 ALA A 174 5 5 HELIX 6 AA6 HIS A 228 PHE A 240 1 13 HELIX 7 AA7 ARG A 256 LYS A 268 1 13 HELIX 8 AA8 THR B 94 ILE B 109 1 16 HELIX 9 AA9 HIS B 122 GLY B 127 1 6 HELIX 10 AB1 GLY B 128 ALA B 135 1 8 HELIX 11 AB2 ALA B 143 GLY B 153 1 11 HELIX 12 AB3 GLU B 170 ALA B 174 5 5 HELIX 13 AB4 HIS B 228 PHE B 240 1 13 HELIX 14 AB5 ARG B 256 LYS B 268 1 13 SHEET 1 AA1 8 ASP A 43 PHE A 46 0 SHEET 2 AA1 8 LEU A 49 ALA A 55 -1 O PHE A 51 N GLN A 44 SHEET 3 AA1 8 VAL A 58 LEU A 65 -1 O GLN A 60 N ARG A 52 SHEET 4 AA1 8 VAL A 73 ASP A 82 -1 O VAL A 73 N LEU A 65 SHEET 5 AA1 8 ARG A 85 VAL A 89 -1 O ARG A 85 N ASP A 82 SHEET 6 AA1 8 VAL A 113 VAL A 117 1 O ALA A 114 N VAL A 86 SHEET 7 AA1 8 ALA A 138 ASN A 142 1 O TYR A 140 N ALA A 116 SHEET 8 AA1 8 HIS A 159 LEU A 161 1 O LEU A 161 N ALA A 141 SHEET 1 AA2 4 LEU A 180 PHE A 183 0 SHEET 2 AA2 4 THR A 195 ILE A 198 -1 O GLY A 197 N LYS A 181 SHEET 3 AA2 4 ILE A 203 GLY A 207 -1 O PHE A 205 N VAL A 196 SHEET 4 AA2 4 MET A 245 MET A 248 1 O VAL A 247 N GLY A 206 SHEET 1 AA3 8 GLN B 44 PHE B 46 0 SHEET 2 AA3 8 LEU B 49 ALA B 55 -1 O PHE B 51 N GLN B 44 SHEET 3 AA3 8 VAL B 58 LEU B 65 -1 O GLN B 60 N ARG B 52 SHEET 4 AA3 8 VAL B 73 ASP B 82 -1 O VAL B 73 N LEU B 65 SHEET 5 AA3 8 ARG B 85 VAL B 89 -1 O ARG B 85 N ASP B 82 SHEET 6 AA3 8 VAL B 113 VAL B 117 1 O ALA B 114 N VAL B 86 SHEET 7 AA3 8 ALA B 138 ASN B 142 1 O TYR B 140 N ALA B 116 SHEET 8 AA3 8 HIS B 159 LEU B 161 1 O LEU B 161 N ALA B 141 SHEET 1 AA4 4 LEU B 180 PHE B 183 0 SHEET 2 AA4 4 THR B 195 ILE B 198 -1 O GLY B 197 N LYS B 181 SHEET 3 AA4 4 ILE B 203 GLY B 207 -1 O PHE B 205 N VAL B 196 SHEET 4 AA4 4 MET B 245 MET B 248 1 O VAL B 247 N GLY B 206 LINK NE2 HIS A 120 AU AU A 303 1555 1555 2.51 LINK ND1 HIS A 122 AU AU A 303 1555 1555 2.00 LINK OD2 ASP A 124 AU AU A 302 1555 1555 2.23 LINK OE1 GLU A 152 AU AU A 301 1555 1555 2.45 LINK OE2 GLU A 152 AU AU A 301 1555 1555 2.33 LINK NE2 HIS A 189 AU AU A 303 1555 1555 2.05 LINK SG CYS A 208 AU AU A 302 1555 1555 2.47 LINK OD2 ASP A 223 AU AU A 301 1555 1555 2.23 LINK OE1 GLU A 227 AU AU B 301 1555 1555 2.49 LINK OE2 GLU A 227 AU AU B 301 1555 1555 2.36 LINK NE2 HIS A 250 AU AU A 302 1555 1555 2.27 LINK AU AU A 301 O HOH A 557 1555 1555 2.31 LINK AU AU A 301 OE1 GLU B 227 1555 1555 2.48 LINK AU AU A 301 OE2 GLU B 227 1555 1555 2.39 LINK AU AU A 302 O HOH A 568 1555 1555 2.43 LINK AU AU A 303 O HOH A 436 1555 1555 1.95 LINK NE2 HIS B 120 AU AU B 303 1555 1555 2.77 LINK ND1 HIS B 122 AU AU B 303 1555 1555 2.02 LINK OD2 ASP B 124 AU AU B 302 1555 1555 2.28 LINK OE1 GLU B 152 AU AU B 301 1555 1555 2.47 LINK OE2 GLU B 152 AU AU B 301 1555 1555 2.35 LINK NE2 HIS B 189 AU AU B 303 1555 1555 2.12 LINK SG CYS B 208 AU AU B 302 1555 1555 2.45 LINK OD2 ASP B 223 AU AU B 301 1555 1555 2.22 LINK NE2 HIS B 250 AU AU B 302 1555 1555 2.27 LINK AU AU B 301 O HOH B 548 1555 1555 2.21 LINK AU AU B 302 O HOH B 560 1555 1555 2.38 SITE 1 AC1 4 GLU A 152 ASP A 223 HOH A 557 GLU B 227 SITE 1 AC2 4 ASP A 124 CYS A 208 HIS A 250 HOH A 568 SITE 1 AC3 4 HIS A 120 HIS A 122 HIS A 189 HOH A 436 SITE 1 AC4 11 GLN A 158 HIS A 159 SER A 160 HOH A 401 SITE 2 AC4 11 HOH A 423 HOH A 437 HOH A 513 HOH A 524 SITE 3 AC4 11 HIS B 261 ARG B 264 LYS B 268 SITE 1 AC5 7 ARG A 234 THR A 260 ARG A 264 HOH A 411 SITE 2 AC5 7 HOH A 413 HOH A 486 GLN B 44 SITE 1 AC6 4 GLU A 227 GLU B 152 ASP B 223 HOH B 548 SITE 1 AC7 4 ASP B 124 CYS B 208 HIS B 250 HOH B 560 SITE 1 AC8 3 HIS B 120 HIS B 122 HIS B 189 CRYST1 70.470 73.760 77.720 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014190 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013557 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012867 0.00000