HEADER MEMBRANE PROTEIN 10-DEC-19 6LI0 TITLE CRYSTAL STRUCTURE OF GPR52 IN COMPLEX WITH AGONIST C17 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHIMERA OF G-PROTEIN COUPLED RECEPTOR 52 AND FLAVODOXIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS, DESULFOVIBRIO VULGARIS STR. SOURCE 3 HILDENBOROUGH; SOURCE 4 ORGANISM_COMMON: HUMAN; SOURCE 5 ORGANISM_TAXID: 9606, 882; SOURCE 6 STRAIN: HILDENBOROUGH; SOURCE 7 GENE: GPR52, DVU_2680; SOURCE 8 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS HUMAN GPR52 RECEPTOR, CLASS A, ORPHAN GPCR, MEMBRANE PROTEIN, AGONIST KEYWDS 2 C17, FLAVODOXIN, LCP EXPDTA X-RAY DIFFRACTION AUTHOR Z.P.LUO,X.LIN,F.XU,G.W.HAN REVDAT 5 23-OCT-24 6LI0 1 REMARK REVDAT 4 03-APR-24 6LI0 1 REMARK REVDAT 3 18-MAR-20 6LI0 1 JRNL REVDAT 2 04-MAR-20 6LI0 1 JRNL REVDAT 1 26-FEB-20 6LI0 0 JRNL AUTH X.LIN,M.LI,N.WANG,Y.WU,Z.LUO,S.GUO,G.W.HAN,S.LI,Y.YUE,X.WEI, JRNL AUTH 2 X.XIE,Y.CHEN,S.ZHAO,J.WU,M.LEI,F.XU JRNL TITL STRUCTURAL BASIS OF LIGAND RECOGNITION AND SELF-ACTIVATION JRNL TITL 2 OF ORPHAN GPR52. JRNL REF NATURE V. 579 152 2020 JRNL REFN ESSN 1476-4687 JRNL PMID 32076264 JRNL DOI 10.1038/S41586-020-2019-0 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0253 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 40732 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2108 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2748 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.68 REMARK 3 BIN R VALUE (WORKING SET) : 0.3800 REMARK 3 BIN FREE R VALUE SET COUNT : 128 REMARK 3 BIN FREE R VALUE : 0.3710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3469 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 401 REMARK 3 SOLVENT ATOMS : 30 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 75.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.04000 REMARK 3 B22 (A**2) : 3.74000 REMARK 3 B33 (A**2) : -0.70000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.171 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.153 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.151 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.595 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3956 ; 0.011 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3710 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5301 ; 1.662 ; 1.708 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8586 ; 0.478 ; 1.699 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 442 ; 5.437 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 169 ;31.882 ;21.065 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 552 ;14.087 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;19.804 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 496 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4156 ; 0.054 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 862 ; 0.046 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1768 ;11.647 ;15.314 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1767 ;11.618 ;15.306 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2210 ;12.283 ;28.710 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2211 ;12.280 ;28.726 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2188 ;16.663 ;17.269 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2189 ;16.659 ;17.272 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3092 ;17.398 ;31.382 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 66429 ;20.258 ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 66420 ;20.259 ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6LI0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1300013681. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42939 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 26.50 REMARK 200 R MERGE (I) : 0.17700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 17.50 REMARK 200 R MERGE FOR SHELL (I) : 2.88500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.980 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: ROSETTA MODELLING REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.13-0.18 M SODIUM ACETATE, 0.1 M REMARK 280 SODIUM CITRATE PH5.0, 32-35% PEG400, LIPIDIC CUBIC PHASE, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.98500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.14000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.18000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 78.14000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.98500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.18000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 16 REMARK 465 GLY A 17 REMARK 465 ILE A 18 REMARK 465 VAL A 19 REMARK 465 ASN A 20 REMARK 465 CYS A 339 REMARK 465 MET A 340 REMARK 465 GLU A 341 REMARK 465 PHE A 342 REMARK 465 LEU A 343 REMARK 465 GLU A 344 REMARK 465 VAL A 345 REMARK 465 LEU A 346 REMARK 465 PHE A 347 REMARK 465 GLN A 348 REMARK 465 GLY A 349 REMARK 465 PRO A 350 REMARK 465 HIS A 351 REMARK 465 HIS A 352 REMARK 465 HIS A 353 REMARK 465 HIS A 354 REMARK 465 HIS A 355 REMARK 465 HIS A 356 REMARK 465 HIS A 357 REMARK 465 HIS A 358 REMARK 465 HIS A 359 REMARK 465 HIS A 360 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A1065 CG1 CG2 CD1 REMARK 470 GLU A 333 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 176 -9.88 -57.51 REMARK 500 LEU A 211 -67.00 -129.63 REMARK 500 SER A1077 30.70 -98.84 REMARK 500 TYR A1100 66.80 -100.36 REMARK 500 GLN A1121 141.80 -172.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 OLC A 1405 REMARK 610 OLC A 1406 REMARK 610 OLC A 1407 REMARK 610 OLC A 1408 REMARK 610 OLC A 1409 REMARK 610 OLC A 1411 REMARK 610 OLC A 1412 REMARK 610 OLC A 1413 REMARK 610 OLC A 1415 REMARK 610 OLC A 1416 REMARK 610 OLC A 1417 REMARK 610 OLC A 1418 REMARK 610 OLC A 1419 REMARK 610 OLC A 1420 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EN6 A 1401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN A 1402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 1410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1412 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1413 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FLC A 1414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1415 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1416 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1417 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1418 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1419 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1420 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1421 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 1422 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 1424 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 1426 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 1427 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 1428 DBREF 6LI0 A 17 236 UNP Q9Y2T5 GPR52_HUMAN 17 236 DBREF 6LI0 A 1003 1148 UNP P00323 FLAV_DESVH 3 148 DBREF 6LI0 A 261 340 UNP Q9Y2T5 GPR52_HUMAN 261 340 SEQADV 6LI0 GLY A 16 UNP Q9Y2T5 EXPRESSION TAG SEQADV 6LI0 TRP A 130 UNP Q9Y2T5 ALA 130 ENGINEERED MUTATION SEQADV 6LI0 ALA A 1002 UNP Q9Y2T5 LINKER SEQADV 6LI0 TRP A 1098 UNP P00323 TYR 98 ENGINEERED MUTATION SEQADV 6LI0 LEU A 264 UNP Q9Y2T5 ALA 264 ENGINEERED MUTATION SEQADV 6LI0 GLN A 278 UNP Q9Y2T5 TRP 278 ENGINEERED MUTATION SEQADV 6LI0 PRO A 314 UNP Q9Y2T5 CYS 314 ENGINEERED MUTATION SEQADV 6LI0 ALA A 318 UNP Q9Y2T5 SER 318 ENGINEERED MUTATION SEQADV 6LI0 ASP A 321 UNP Q9Y2T5 ASN 321 ENGINEERED MUTATION SEQADV 6LI0 THR A 323 UNP Q9Y2T5 VAL 323 ENGINEERED MUTATION SEQADV 6LI0 GLU A 341 UNP Q9Y2T5 EXPRESSION TAG SEQADV 6LI0 PHE A 342 UNP Q9Y2T5 EXPRESSION TAG SEQADV 6LI0 LEU A 343 UNP Q9Y2T5 EXPRESSION TAG SEQADV 6LI0 GLU A 344 UNP Q9Y2T5 EXPRESSION TAG SEQADV 6LI0 VAL A 345 UNP Q9Y2T5 EXPRESSION TAG SEQADV 6LI0 LEU A 346 UNP Q9Y2T5 EXPRESSION TAG SEQADV 6LI0 PHE A 347 UNP Q9Y2T5 EXPRESSION TAG SEQADV 6LI0 GLN A 348 UNP Q9Y2T5 EXPRESSION TAG SEQADV 6LI0 GLY A 349 UNP Q9Y2T5 EXPRESSION TAG SEQADV 6LI0 PRO A 350 UNP Q9Y2T5 EXPRESSION TAG SEQADV 6LI0 HIS A 351 UNP Q9Y2T5 EXPRESSION TAG SEQADV 6LI0 HIS A 352 UNP Q9Y2T5 EXPRESSION TAG SEQADV 6LI0 HIS A 353 UNP Q9Y2T5 EXPRESSION TAG SEQADV 6LI0 HIS A 354 UNP Q9Y2T5 EXPRESSION TAG SEQADV 6LI0 HIS A 355 UNP Q9Y2T5 EXPRESSION TAG SEQADV 6LI0 HIS A 356 UNP Q9Y2T5 EXPRESSION TAG SEQADV 6LI0 HIS A 357 UNP Q9Y2T5 EXPRESSION TAG SEQADV 6LI0 HIS A 358 UNP Q9Y2T5 EXPRESSION TAG SEQADV 6LI0 HIS A 359 UNP Q9Y2T5 EXPRESSION TAG SEQADV 6LI0 HIS A 360 UNP Q9Y2T5 EXPRESSION TAG SEQRES 1 A 468 GLY GLY ILE VAL ASN VAL SER GLU ARG HIS SER CYS PRO SEQRES 2 A 468 LEU GLY PHE GLY HIS TYR SER VAL VAL ASP VAL CYS ILE SEQRES 3 A 468 PHE GLU THR VAL VAL ILE VAL LEU LEU THR PHE LEU ILE SEQRES 4 A 468 ILE ALA GLY ASN LEU THR VAL ILE PHE VAL PHE HIS CYS SEQRES 5 A 468 ALA PRO LEU LEU HIS HIS TYR THR THR SER TYR PHE ILE SEQRES 6 A 468 GLN THR MET ALA TYR ALA ASP LEU PHE VAL GLY VAL SER SEQRES 7 A 468 CYS LEU VAL PRO THR LEU SER LEU LEU HIS TYR SER THR SEQRES 8 A 468 GLY VAL HIS GLU SER LEU THR CYS GLN VAL PHE GLY TYR SEQRES 9 A 468 ILE ILE SER VAL LEU LYS SER VAL SER MET TRP CYS LEU SEQRES 10 A 468 ALA CYS ILE SER VAL ASP ARG TYR LEU ALA ILE THR LYS SEQRES 11 A 468 PRO LEU SER TYR ASN GLN LEU VAL THR PRO CYS ARG LEU SEQRES 12 A 468 ARG ILE CYS ILE ILE LEU ILE TRP ILE TYR SER CYS LEU SEQRES 13 A 468 ILE PHE LEU PRO SER PHE PHE GLY TRP GLY LYS PRO GLY SEQRES 14 A 468 TYR HIS GLY ASP ILE PHE GLU TRP CYS ALA THR SER TRP SEQRES 15 A 468 LEU THR SER ALA TYR PHE THR GLY PHE ILE VAL CYS LEU SEQRES 16 A 468 LEU TYR ALA PRO ALA ALA PHE VAL VAL CYS PHE THR TYR SEQRES 17 A 468 PHE HIS ILE PHE LYS ILE CYS ARG GLN HIS THR LYS GLU SEQRES 18 A 468 ALA LYS ALA LEU ILE VAL TYR GLY SER THR THR GLY ASN SEQRES 19 A 468 THR GLU TYR THR ALA GLU THR ILE ALA ARG GLU LEU ALA SEQRES 20 A 468 ASP ALA GLY TYR GLU VAL ASP SER ARG ASP ALA ALA SER SEQRES 21 A 468 VAL GLU ALA GLY GLY LEU PHE GLU GLY PHE ASP LEU VAL SEQRES 22 A 468 LEU LEU GLY CYS SER THR TRP GLY ASP ASP SER ILE GLU SEQRES 23 A 468 LEU GLN ASP ASP PHE ILE PRO LEU PHE ASP SER LEU GLU SEQRES 24 A 468 GLU THR GLY ALA GLN GLY ARG LYS VAL ALA CYS PHE GLY SEQRES 25 A 468 CYS GLY ASP SER SER TRP GLU TYR PHE CYS GLY ALA VAL SEQRES 26 A 468 ASP ALA ILE GLU GLU LYS LEU LYS ASN LEU GLY ALA GLU SEQRES 27 A 468 ILE VAL GLN ASP GLY LEU ARG ILE ASP GLY ASP PRO ARG SEQRES 28 A 468 ALA ALA ARG ASP ASP ILE VAL GLY TRP ALA HIS ASP VAL SEQRES 29 A 468 ARG GLY ALA ILE ARG ARG TYR LEU MET VAL LEU PHE ARG SEQRES 30 A 468 ILE THR SER VAL PHE TYR MET LEU GLN LEU PRO TYR ILE SEQRES 31 A 468 ILE TYR PHE LEU LEU GLU SER SER ARG VAL LEU ASP ASN SEQRES 32 A 468 PRO THR LEU SER PHE LEU THR THR TRP LEU ALA ILE SER SEQRES 33 A 468 ASN SER PHE CYS ASN PRO VAL ILE TYR ALA LEU SER ASP SEQRES 34 A 468 SER THR PHE ARG LEU GLY LEU ARG ARG LEU SER GLU THR SEQRES 35 A 468 MET CYS THR SER CYS MET GLU PHE LEU GLU VAL LEU PHE SEQRES 36 A 468 GLN GLY PRO HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS HET EN6 A1401 34 HET FMN A1402 31 HET OLC A1403 25 HET OLC A1404 25 HET OLC A1405 15 HET OLC A1406 16 HET OLC A1407 16 HET OLC A1408 12 HET OLC A1409 13 HET PEG A1410 7 HET OLC A1411 23 HET OLC A1412 11 HET OLC A1413 9 HET FLC A1414 13 HET OLC A1415 15 HET OLC A1416 10 HET OLC A1417 18 HET OLC A1418 16 HET OLC A1419 9 HET OLC A1420 9 HET OLC A1421 25 HET PEG A1422 7 HET PEG A1423 7 HET PEG A1424 7 HET PEG A1425 7 HET PEG A1426 7 HET PEG A1427 7 HET PEG A1428 7 HETNAM EN6 N-(2-HYDROXYETHYL)-5-(HYDROXYMETHYL)-3-METHYL-1-[2-[[3- HETNAM 2 EN6 (TRIFLUOROMETHYL)PHENYL]METHYL]-1-BENZOTHIOPHEN-7- HETNAM 3 EN6 YL]PYRAZOLE-4-CARBOXAMIDE HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM OLC (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM FLC CITRATE ANION HETSYN FMN RIBOFLAVIN MONOPHOSPHATE HETSYN OLC 1-OLEOYL-R-GLYCEROL FORMUL 2 EN6 C24 H22 F3 N3 O3 S FORMUL 3 FMN C17 H21 N4 O9 P FORMUL 4 OLC 17(C21 H40 O4) FORMUL 11 PEG 8(C4 H10 O3) FORMUL 15 FLC C6 H5 O7 3- FORMUL 30 HOH *30(H2 O) HELIX 1 AA1 CYS A 40 CYS A 67 1 28 HELIX 2 AA2 THR A 75 TYR A 104 1 30 HELIX 3 AA3 GLU A 110 LYS A 145 1 36 HELIX 4 AA4 LYS A 145 VAL A 153 1 9 HELIX 5 AA5 THR A 154 PHE A 173 1 20 HELIX 6 AA6 LEU A 174 PHE A 178 5 5 HELIX 7 AA7 TYR A 185 ILE A 189 5 5 HELIX 8 AA8 PHE A 190 TRP A 197 1 8 HELIX 9 AA9 SER A 200 LEU A 211 1 12 HELIX 10 AB1 LEU A 211 PHE A 227 1 17 HELIX 11 AB2 GLY A 1013 ALA A 1029 1 17 HELIX 12 AB3 ALA A 1039 VAL A 1041 5 3 HELIX 13 AB4 PHE A 1071 SER A 1077 1 7 HELIX 14 AB5 LEU A 1078 THR A 1081 5 4 HELIX 15 AB6 CYS A 1102 LEU A 1115 1 14 HELIX 16 AB7 ASP A 1129 ALA A 1132 5 4 HELIX 17 AB8 ALA A 1133 ARG A 1145 1 13 HELIX 18 AB9 GLY A 1146 SER A 290 1 33 HELIX 19 AC1 ASN A 295 SER A 308 1 14 HELIX 20 AC2 SER A 308 ASP A 321 1 14 HELIX 21 AC3 ASP A 321 SER A 338 1 18 SHEET 1 AA1 2 HIS A 25 SER A 26 0 SHEET 2 AA1 2 HIS A 33 TYR A 34 -1 O TYR A 34 N HIS A 25 SHEET 1 AA2 5 GLU A1032 ASP A1037 0 SHEET 2 AA2 5 LYS A1003 GLY A1009 1 N ILE A1006 O ARG A1036 SHEET 3 AA2 5 LEU A1052 CYS A1057 1 O GLY A1056 N VAL A1007 SHEET 4 AA2 5 LYS A1087 GLY A1094 1 O PHE A1091 N LEU A1055 SHEET 5 AA2 5 GLU A1118 ILE A1119 1 O GLU A1118 N VAL A1088 SHEET 1 AA3 5 GLU A1032 ASP A1037 0 SHEET 2 AA3 5 LYS A1003 GLY A1009 1 N ILE A1006 O ARG A1036 SHEET 3 AA3 5 LEU A1052 CYS A1057 1 O GLY A1056 N VAL A1007 SHEET 4 AA3 5 LYS A1087 GLY A1094 1 O PHE A1091 N LEU A1055 SHEET 5 AA3 5 LEU A1124 ASP A1127 1 O ILE A1126 N GLY A1094 SHEET 1 AA4 2 THR A1059 TRP A1060 0 SHEET 2 AA4 2 GLU A1066 LEU A1067 -1 O GLU A1066 N TRP A1060 SSBOND 1 CYS A 27 CYS A 40 1555 1555 2.03 SSBOND 2 CYS A 114 CYS A 193 1555 1555 2.02 SITE 1 AC1 20 PRO A 28 TYR A 34 ASP A 38 VAL A 39 SITE 2 AC1 20 CYS A 40 THR A 44 ILE A 47 CYS A 94 SITE 3 AC1 20 LEU A 101 PHE A 117 TYR A 185 HIS A 186 SITE 4 AC1 20 ASP A 188 ILE A 189 PHE A 190 GLU A 191 SITE 5 AC1 20 PRO A 296 SER A 299 PHE A 300 THR A 303 SITE 1 AC2 22 TYR A 140 SER A1010 THR A1011 THR A1012 SITE 2 AC2 22 GLY A1013 ASN A1014 THR A1015 SER A1058 SITE 3 AC2 22 THR A1059 TRP A1060 GLY A1061 ASP A1062 SITE 4 AC2 22 CYS A1093 GLY A1094 ASP A1095 TRP A1098 SITE 5 AC2 22 TYR A1100 PHE A1101 CYS A1102 HOH A1501 SITE 6 AC2 22 HOH A1505 HOH A1513 SITE 1 AC3 5 THR A 82 TRP A 166 CYS A 170 ASN A 295 SITE 2 AC3 5 OLC A1408 SITE 1 AC4 6 PHE A 89 SER A 100 GLU A 110 THR A 113 SITE 2 AC4 6 ARG A 269 LEU A 298 SITE 1 AC5 5 LEU A 112 THR A 113 ARG A 269 SER A 272 SITE 2 AC5 5 MET A 276 SITE 1 AC6 6 HIS A 103 ALA A 213 PHE A 217 CYS A 220 SITE 2 AC6 6 PHE A 221 OLC A1407 SITE 1 AC7 3 HIS A 103 OLC A1406 OLC A1415 SITE 1 AC8 5 GLY A 30 ARG A 159 TRP A 166 THR A 297 SITE 2 AC8 5 OLC A1403 SITE 1 AC9 2 PHE A 177 PHE A 178 SITE 1 AD1 2 GLY A 179 TRP A 180 SITE 1 AD2 6 HIS A 73 ARG A 139 PHE A 227 ARG A 231 SITE 2 AD2 6 LYS A1087 ILE A1148 SITE 1 AD3 3 CYS A 134 VAL A 137 OLC A1413 SITE 1 AD4 2 TRP A 130 OLC A1412 SITE 1 AD5 6 VAL A 108 ARG A 261 ARG A 262 MET A 265 SITE 2 AD5 6 ARG A 269 GLY A1146 SITE 1 AD6 5 VAL A 219 CYS A 220 PHE A 268 TYR A 275 SITE 2 AD6 5 OLC A1407 SITE 1 AD7 3 LEU A 112 ARG A 269 SER A 320 SITE 1 AD8 6 PHE A 31 HIS A 33 VAL A 39 ILE A 41 SITE 2 AD8 6 PHE A 42 GLU A 43 SITE 1 AD9 3 LEU A 171 PHE A 178 TRP A 180 SITE 1 AE1 1 THR A 60 SITE 1 AE2 3 THR A 60 PHE A 63 PEG A1427 SITE 1 AE3 3 PHE A 42 VAL A 46 SER A 308 SITE 1 AE4 1 SER A 338 SITE 1 AE5 3 ARG A 330 ASP A1106 ARG A1125 SITE 1 AE6 3 ASN A 150 ASP A1051 ARG A1086 SITE 1 AE7 2 SER A 290 OLC A1420 SITE 1 AE8 5 GLN A 232 HIS A 233 THR A 234 LYS A 235 SITE 2 AE8 5 GLU A 236 CRYST1 59.970 88.360 156.280 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016675 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011317 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006399 0.00000