HEADER MEMBRANE PROTEIN 10-DEC-19 6LI1 TITLE CRYSTAL STRUCTURE OF GPR52 LIGAND FREE FORM WITH FLAVODOXIN FUSION COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHIMERA OF G-PROTEIN COUPLED RECEPTOR 52 AND FLAVODOXIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS, DESULFOVIBRIO VULGARIS STR. SOURCE 3 HILDENBOROUGH; SOURCE 4 ORGANISM_COMMON: HUMAN; SOURCE 5 ORGANISM_TAXID: 9606, 882; SOURCE 6 STRAIN: HILDENBOROUGH; SOURCE 7 GENE: GPR52, DVU_2680; SOURCE 8 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS HUMAN GPR52 RECEPTOR, CLASS A, ORPHAN GPCR, MEMBRANE PROTEIN, APO KEYWDS 2 FORM, FLAVODOXIN, LCP EXPDTA X-RAY DIFFRACTION AUTHOR Z.P.LUO,X.LIN,F.XU,G.W.HAN REVDAT 5 06-NOV-24 6LI1 1 REMARK REVDAT 4 03-APR-24 6LI1 1 REMARK REVDAT 3 18-MAR-20 6LI1 1 JRNL REVDAT 2 04-MAR-20 6LI1 1 JRNL REVDAT 1 26-FEB-20 6LI1 0 JRNL AUTH X.LIN,M.LI,N.WANG,Y.WU,Z.LUO,S.GUO,G.W.HAN,S.LI,Y.YUE,X.WEI, JRNL AUTH 2 X.XIE,Y.CHEN,S.ZHAO,J.WU,M.LEI,F.XU JRNL TITL STRUCTURAL BASIS OF LIGAND RECOGNITION AND SELF-ACTIVATION JRNL TITL 2 OF ORPHAN GPR52. JRNL REF NATURE V. 579 152 2020 JRNL REFN ESSN 1476-4687 JRNL PMID 32076264 JRNL DOI 10.1038/S41586-020-2019-0 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0253 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 3 NUMBER OF REFLECTIONS : 16462 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.245 REMARK 3 R VALUE (WORKING SET) : 0.244 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 912 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1054 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.52 REMARK 3 BIN R VALUE (WORKING SET) : 0.3680 REMARK 3 BIN FREE R VALUE SET COUNT : 68 REMARK 3 BIN FREE R VALUE : 0.4420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3339 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 72 REMARK 3 SOLVENT ATOMS : 7 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 78.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.98000 REMARK 3 B22 (A**2) : -0.66000 REMARK 3 B33 (A**2) : -0.32000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.811 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.364 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.367 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.260 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.917 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3495 ; 0.008 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3141 ; 0.008 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4764 ; 1.541 ; 1.647 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7207 ; 0.810 ; 1.580 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 440 ; 3.420 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 150 ;31.657 ;20.867 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 493 ;17.046 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;19.310 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 477 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3911 ; 0.041 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 805 ; 0.034 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1763 ;14.711 ;16.965 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1762 ;14.708 ;16.959 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2202 ;20.066 ;31.884 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2203 ;20.064 ;31.891 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1732 ;17.212 ;17.824 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1733 ;17.207 ;17.820 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2563 ;22.484 ;32.723 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 58791 ;25.811 ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 58791 ;25.811 ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 REMARK 3 THERE ARE SOME UNKNOWN DENSITIES LOCATED NEAR N5 ATOM OF FMN IN A REMARK 3 CHAIN. THIS WAS NOT BEEN MODELLED. REMARK 4 REMARK 4 6LI1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1300013682. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18312 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 9.200 REMARK 200 R MERGE (I) : 0.23500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 2.74800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.980 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: ROSETTA MODELLING REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M POTASSIUM ACETATE, 0.1 M SODIUM REMARK 280 CITRATE PH 5.0, AND 30% PEG400, LIPIDIC CUBIC PHASE, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.32400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.15200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.94550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 74.15200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.32400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.94550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 16 REMARK 465 GLY A 17 REMARK 465 ILE A 18 REMARK 465 VAL A 19 REMARK 465 ASN A 20 REMARK 465 VAL A 21 REMARK 465 SER A 22 REMARK 465 GLU A 23 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 29 CG CD1 CD2 REMARK 470 PHE A 31 CG CD1 CD2 CE1 CE2 CZ REMARK 470 VAL A 37 CG1 CG2 REMARK 470 VAL A 39 CG1 CG2 REMARK 470 LEU A 50 CG CD1 CD2 REMARK 470 ILE A 54 CG1 CG2 CD1 REMARK 470 TYR A 104 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 SER A 105 OG REMARK 470 THR A 106 OG1 CG2 REMARK 470 VAL A 108 CG1 CG2 REMARK 470 HIS A 109 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 110 CG CD OE1 OE2 REMARK 470 LEU A 112 CG CD1 CD2 REMARK 470 LYS A 125 CG CD CE NZ REMARK 470 LYS A 145 CG CD CE NZ REMARK 470 LEU A 147 CG CD1 CD2 REMARK 470 GLN A 151 CG CD OE1 NE2 REMARK 470 GLU A 191 CG CD OE1 OE2 REMARK 470 TRP A 192 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 192 CZ3 CH2 REMARK 470 THR A 195 OG1 CG2 REMARK 470 TRP A 197 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 197 CZ3 CH2 REMARK 470 LEU A 198 CG CD1 CD2 REMARK 470 TYR A 202 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ILE A 226 CD1 REMARK 470 GLN A 232 CG CD OE1 NE2 REMARK 470 HIS A 233 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 235 CG CD CE NZ REMARK 470 GLU A 236 CG CD OE1 OE2 REMARK 470 GLU A 288 CG CD OE1 OE2 REMARK 470 SER A 290 OG REMARK 470 ARG A 291 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 293 CG CD1 CD2 REMARK 470 ASP A 294 CG OD1 OD2 REMARK 470 GLU A 333 CG CD OE1 OE2 REMARK 470 MET A 340 CG SD CE REMARK 470 CYS A 341 SG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 109 75.80 43.57 REMARK 500 LYS A 145 74.04 -118.74 REMARK 500 LEU A 211 -70.51 -132.79 REMARK 500 HIS A 233 -62.52 -90.31 REMARK 500 PHE A1101 109.04 -52.31 REMARK 500 SER A 320 -41.91 -130.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 OLC A 1201 REMARK 610 OLC A 1204 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN A 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 1203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 1205 DBREF 6LI1 A 17 236 UNP Q9Y2T5 GPR52_HUMAN 17 236 DBREF 6LI1 A 1003 1148 UNP P00323 FLAV_DESVH 3 148 DBREF 6LI1 A 265 341 UNP Q9Y2T5 GPR52_HUMAN 265 341 SEQADV 6LI1 GLY A 16 UNP Q9Y2T5 EXPRESSION TAG SEQADV 6LI1 TRP A 130 UNP Q9Y2T5 ALA 130 ENGINEERED MUTATION SEQADV 6LI1 ALA A 1002 UNP Q9Y2T5 LINKER SEQADV 6LI1 TRP A 1098 UNP P00323 TYR 98 ENGINEERED MUTATION SEQADV 6LI1 ARG A 261 UNP P00323 LINKER SEQADV 6LI1 ARG A 262 UNP P00323 LINKER SEQADV 6LI1 TYR A 263 UNP P00323 LINKER SEQADV 6LI1 LEU A 264 UNP P00323 LINKER SEQADV 6LI1 GLN A 278 UNP Q9Y2T5 TRP 278 ENGINEERED MUTATION SEQADV 6LI1 PRO A 314 UNP Q9Y2T5 CYS 314 ENGINEERED MUTATION SEQADV 6LI1 ALA A 318 UNP Q9Y2T5 SER 318 ENGINEERED MUTATION SEQADV 6LI1 ASP A 321 UNP Q9Y2T5 ASN 321 ENGINEERED MUTATION SEQADV 6LI1 THR A 323 UNP Q9Y2T5 VAL 323 ENGINEERED MUTATION SEQRES 1 A 449 GLY GLY ILE VAL ASN VAL SER GLU ARG HIS SER CYS PRO SEQRES 2 A 449 LEU GLY PHE GLY HIS TYR SER VAL VAL ASP VAL CYS ILE SEQRES 3 A 449 PHE GLU THR VAL VAL ILE VAL LEU LEU THR PHE LEU ILE SEQRES 4 A 449 ILE ALA GLY ASN LEU THR VAL ILE PHE VAL PHE HIS CYS SEQRES 5 A 449 ALA PRO LEU LEU HIS HIS TYR THR THR SER TYR PHE ILE SEQRES 6 A 449 GLN THR MET ALA TYR ALA ASP LEU PHE VAL GLY VAL SER SEQRES 7 A 449 CYS LEU VAL PRO THR LEU SER LEU LEU HIS TYR SER THR SEQRES 8 A 449 GLY VAL HIS GLU SER LEU THR CYS GLN VAL PHE GLY TYR SEQRES 9 A 449 ILE ILE SER VAL LEU LYS SER VAL SER MET TRP CYS LEU SEQRES 10 A 449 ALA CYS ILE SER VAL ASP ARG TYR LEU ALA ILE THR LYS SEQRES 11 A 449 PRO LEU SER TYR ASN GLN LEU VAL THR PRO CYS ARG LEU SEQRES 12 A 449 ARG ILE CYS ILE ILE LEU ILE TRP ILE TYR SER CYS LEU SEQRES 13 A 449 ILE PHE LEU PRO SER PHE PHE GLY TRP GLY LYS PRO GLY SEQRES 14 A 449 TYR HIS GLY ASP ILE PHE GLU TRP CYS ALA THR SER TRP SEQRES 15 A 449 LEU THR SER ALA TYR PHE THR GLY PHE ILE VAL CYS LEU SEQRES 16 A 449 LEU TYR ALA PRO ALA ALA PHE VAL VAL CYS PHE THR TYR SEQRES 17 A 449 PHE HIS ILE PHE LYS ILE CYS ARG GLN HIS THR LYS GLU SEQRES 18 A 449 ALA LYS ALA LEU ILE VAL TYR GLY SER THR THR GLY ASN SEQRES 19 A 449 THR GLU TYR THR ALA GLU THR ILE ALA ARG GLU LEU ALA SEQRES 20 A 449 ASP ALA GLY TYR GLU VAL ASP SER ARG ASP ALA ALA SER SEQRES 21 A 449 VAL GLU ALA GLY GLY LEU PHE GLU GLY PHE ASP LEU VAL SEQRES 22 A 449 LEU LEU GLY CYS SER THR TRP GLY ASP ASP SER ILE GLU SEQRES 23 A 449 LEU GLN ASP ASP PHE ILE PRO LEU PHE ASP SER LEU GLU SEQRES 24 A 449 GLU THR GLY ALA GLN GLY ARG LYS VAL ALA CYS PHE GLY SEQRES 25 A 449 CYS GLY ASP SER SER TRP GLU TYR PHE CYS GLY ALA VAL SEQRES 26 A 449 ASP ALA ILE GLU GLU LYS LEU LYS ASN LEU GLY ALA GLU SEQRES 27 A 449 ILE VAL GLN ASP GLY LEU ARG ILE ASP GLY ASP PRO ARG SEQRES 28 A 449 ALA ALA ARG ASP ASP ILE VAL GLY TRP ALA HIS ASP VAL SEQRES 29 A 449 ARG GLY ALA ILE ARG ARG TYR LEU MET VAL LEU PHE ARG SEQRES 30 A 449 ILE THR SER VAL PHE TYR MET LEU GLN LEU PRO TYR ILE SEQRES 31 A 449 ILE TYR PHE LEU LEU GLU SER SER ARG VAL LEU ASP ASN SEQRES 32 A 449 PRO THR LEU SER PHE LEU THR THR TRP LEU ALA ILE SER SEQRES 33 A 449 ASN SER PHE CYS ASN PRO VAL ILE TYR ALA LEU SER ASP SEQRES 34 A 449 SER THR PHE ARG LEU GLY LEU ARG ARG LEU SER GLU THR SEQRES 35 A 449 MET CYS THR SER CYS MET CYS HET OLC A1201 12 HET FMN A1202 31 HET PEG A1203 7 HET OLC A1204 12 HET PGE A1205 10 HETNAM OLC (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM PGE TRIETHYLENE GLYCOL HETSYN OLC 1-OLEOYL-R-GLYCEROL HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 2 OLC 2(C21 H40 O4) FORMUL 3 FMN C17 H21 N4 O9 P FORMUL 4 PEG C4 H10 O3 FORMUL 6 PGE C6 H14 O4 FORMUL 7 HOH *7(H2 O) HELIX 1 AA1 CYS A 40 ALA A 68 1 29 HELIX 2 AA2 HIS A 73 CYS A 94 1 22 HELIX 3 AA3 CYS A 94 HIS A 103 1 10 HELIX 4 AA4 HIS A 109 LYS A 145 1 37 HELIX 5 AA5 SER A 148 VAL A 153 1 6 HELIX 6 AA6 THR A 154 PHE A 173 1 20 HELIX 7 AA7 LEU A 174 PHE A 177 5 4 HELIX 8 AA8 GLY A 184 ASP A 188 5 5 HELIX 9 AA9 PHE A 190 TRP A 197 1 8 HELIX 10 AB1 SER A 200 LEU A 211 1 12 HELIX 11 AB2 LEU A 211 GLN A 232 1 22 HELIX 12 AB3 GLY A 1013 GLY A 1030 1 18 HELIX 13 AB4 ALA A 1039 VAL A 1041 5 3 HELIX 14 AB5 ASP A 1070 SER A 1077 1 8 HELIX 15 AB6 LEU A 1078 GLY A 1082 5 5 HELIX 16 AB7 CYS A 1102 LEU A 1115 1 14 HELIX 17 AB8 ALA A 1133 ALA A 1147 1 15 HELIX 18 AB9 ARG A 261 SER A 290 1 30 HELIX 19 AC1 ASN A 295 SER A 308 1 14 HELIX 20 AC2 SER A 308 ASP A 321 1 14 HELIX 21 AC3 ASP A 321 CYS A 341 1 21 SHEET 1 AA1 5 GLU A1032 ASP A1037 0 SHEET 2 AA1 5 LYS A1003 GLY A1009 1 N ILE A1006 O ARG A1036 SHEET 3 AA1 5 LEU A1052 CYS A1057 1 O LEU A1054 N LEU A1005 SHEET 4 AA1 5 LYS A1087 GLY A1094 1 O ALA A1089 N LEU A1055 SHEET 5 AA1 5 GLU A1118 ILE A1119 1 O GLU A1118 N VAL A1088 SHEET 1 AA2 5 GLU A1032 ASP A1037 0 SHEET 2 AA2 5 LYS A1003 GLY A1009 1 N ILE A1006 O ARG A1036 SHEET 3 AA2 5 LEU A1052 CYS A1057 1 O LEU A1054 N LEU A1005 SHEET 4 AA2 5 LYS A1087 GLY A1094 1 O ALA A1089 N LEU A1055 SHEET 5 AA2 5 LEU A1124 ASP A1127 1 O ILE A1126 N GLY A1094 SHEET 1 AA3 2 THR A1059 TRP A1060 0 SHEET 2 AA3 2 GLU A1066 LEU A1067 -1 O GLU A1066 N TRP A1060 SSBOND 1 CYS A 27 CYS A 40 1555 1555 2.04 SSBOND 2 CYS A 114 CYS A 193 1555 1555 2.02 SITE 1 AC1 17 SER A1010 THR A1011 THR A1012 GLY A1013 SITE 2 AC1 17 ASN A1014 THR A1015 SER A1058 THR A1059 SITE 3 AC1 17 TRP A1060 GLY A1061 CYS A1093 GLY A1094 SITE 4 AC1 17 ASP A1095 TRP A1098 TYR A1100 PHE A1101 SITE 5 AC1 17 CYS A1102 SITE 1 AC2 3 THR A 75 PRO A 155 LEU A 158 SITE 1 AC3 1 ARG A 269 SITE 1 AC4 5 PHE A 65 TYR A 263 TYR A 317 ASP A 321 SITE 2 AC4 5 PHE A 324 CRYST1 66.648 79.891 148.304 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015004 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012517 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006743 0.00000