HEADER MEMBRANE PROTEIN 10-DEC-19 6LI2 TITLE CRYSTAL STRUCTURE OF GPR52 LIGAND FREE FORM WITH RUBREDOXIN FUSION COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHIMERA OF G-PROTEIN COUPLED RECEPTOR 52 AND RUBREDOXIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RD; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS, CLOSTRIDIUM PASTEURIANUM; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606, 1501; SOURCE 5 GENE: GPR52; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: F9 KEYWDS HUMAN GPR52 RECEPTOR, CLASS A, ORPHAN GPCR, MEMBRANE PROTEIN, APO KEYWDS 2 FORM, RUBREDOXIN, LCP EXPDTA X-RAY DIFFRACTION AUTHOR Z.P.LUO,X.LIN,F.XU,G.W.HAN REVDAT 5 20-NOV-24 6LI2 1 REMARK REVDAT 4 03-APR-24 6LI2 1 REMARK REVDAT 3 18-MAR-20 6LI2 1 JRNL REVDAT 2 04-MAR-20 6LI2 1 JRNL REVDAT 1 26-FEB-20 6LI2 0 JRNL AUTH X.LIN,M.LI,N.WANG,Y.WU,Z.LUO,S.GUO,G.W.HAN,S.LI,Y.YUE,X.WEI, JRNL AUTH 2 X.XIE,Y.CHEN,S.ZHAO,J.WU,M.LEI,F.XU JRNL TITL STRUCTURAL BASIS OF LIGAND RECOGNITION AND SELF-ACTIVATION JRNL TITL 2 OF ORPHAN GPR52. JRNL REF NATURE V. 579 152 2020 JRNL REFN ESSN 1476-4687 JRNL PMID 32076264 JRNL DOI 10.1038/S41586-020-2019-0 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0253 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 81.1 REMARK 3 NUMBER OF REFLECTIONS : 11830 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.242 REMARK 3 R VALUE (WORKING SET) : 0.241 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 612 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 566 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 53.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.2580 REMARK 3 BIN FREE R VALUE SET COUNT : 26 REMARK 3 BIN FREE R VALUE : 0.2720 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2761 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 177 REMARK 3 SOLVENT ATOMS : 18 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 47.78 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.26000 REMARK 3 B22 (A**2) : -3.97000 REMARK 3 B33 (A**2) : 1.71000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 16.343 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.401 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.315 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 32.117 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.889 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.892 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3015 ; 0.008 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2798 ; 0.007 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4069 ; 1.440 ; 1.689 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6475 ; 0.805 ; 1.666 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 345 ; 4.494 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 123 ;34.237 ;21.545 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 433 ;16.099 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;14.948 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 393 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3178 ; 0.042 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 660 ; 0.036 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1386 ; 8.562 ; 9.930 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1385 ; 8.537 ; 9.933 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1729 ;11.818 ;18.623 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1730 ;11.827 ;18.625 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1629 ; 9.052 ;11.456 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1630 ; 9.049 ;11.455 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2341 ;12.484 ;20.757 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 49693 ;18.218 ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 49688 ;18.218 ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 23 A 235 REMARK 3 ORIGIN FOR THE GROUP (A): 5.7104 20.6519 37.6473 REMARK 3 T TENSOR REMARK 3 T11: 0.0684 T22: 0.3205 REMARK 3 T33: 0.0062 T12: -0.0378 REMARK 3 T13: 0.0011 T23: -0.0056 REMARK 3 L TENSOR REMARK 3 L11: 0.4022 L22: 0.4206 REMARK 3 L33: 1.0024 L12: -0.2062 REMARK 3 L13: -0.1189 L23: 0.4029 REMARK 3 S TENSOR REMARK 3 S11: -0.0350 S12: 0.0063 S13: 0.0030 REMARK 3 S21: 0.0847 S22: -0.0273 S23: 0.0019 REMARK 3 S31: 0.1184 S32: -0.1444 S33: 0.0623 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1001 A 1054 REMARK 3 ORIGIN FOR THE GROUP (A): 23.0352 34.5562 69.9635 REMARK 3 T TENSOR REMARK 3 T11: 0.0563 T22: 0.3297 REMARK 3 T33: 0.0306 T12: -0.0306 REMARK 3 T13: -0.0266 T23: 0.0171 REMARK 3 L TENSOR REMARK 3 L11: 1.3930 L22: 0.2524 REMARK 3 L33: 3.9739 L12: 0.3127 REMARK 3 L13: -1.1322 L23: 0.1753 REMARK 3 S TENSOR REMARK 3 S11: 0.0520 S12: 0.0569 S13: -0.0037 REMARK 3 S21: -0.0188 S22: -0.0510 S23: 0.0491 REMARK 3 S31: -0.0281 S32: 0.0843 S33: -0.0010 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 263 A 605 REMARK 3 ORIGIN FOR THE GROUP (A): 16.6934 26.2174 41.3018 REMARK 3 T TENSOR REMARK 3 T11: 0.0812 T22: 0.3231 REMARK 3 T33: 0.0796 T12: -0.0079 REMARK 3 T13: 0.0327 T23: 0.0263 REMARK 3 L TENSOR REMARK 3 L11: 1.0906 L22: 0.1786 REMARK 3 L33: 2.0785 L12: 0.3888 REMARK 3 L13: 1.0534 L23: 0.3703 REMARK 3 S TENSOR REMARK 3 S11: -0.0525 S12: -0.0652 S13: -0.0372 REMARK 3 S21: -0.0156 S22: -0.0662 S23: -0.0616 REMARK 3 S31: 0.2166 S32: -0.2529 S33: 0.1187 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 REMARK 3 REMARK 3 AUTHORS ANISO-CORRECTED THE OBSERVED DATA BY STARANISO WHICH REMARK 3 REMOVE WEAK REFLECTIONS. REMARK 4 REMARK 4 6LI2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-DEC-19. REMARK 100 THE DEPOSITION ID IS D_1300013683. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15032 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 8.200 REMARK 200 R MERGE (I) : 0.16400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.1 REMARK 200 DATA REDUNDANCY IN SHELL : 8.00 REMARK 200 R MERGE FOR SHELL (I) : 0.96700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: ROSETTA MODELLING REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.08-0.1 M MAGNESIUM SULPHATE, 0.1 M REMARK 280 SODIUM CACODYLATE TRIHYDRATE PH 6.2, AND 28-31% PEG300, LIPIDIC REMARK 280 CUBIC PHASE, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 38.61150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 56.61450 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 69.30750 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 38.61150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 56.61450 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 69.30750 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 38.61150 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 56.61450 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 69.30750 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 38.61150 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 56.61450 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 69.30750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE BIOLOGICAL UNIT IS UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 16 REMARK 465 GLY A 17 REMARK 465 ILE A 18 REMARK 465 VAL A 19 REMARK 465 ASN A 20 REMARK 465 VAL A 21 REMARK 465 SER A 22 REMARK 465 ALA A 68 REMARK 465 PRO A 69 REMARK 465 LEU A 70 REMARK 465 LEU A 606 REMARK 465 PHE A 607 REMARK 465 GLN A 608 REMARK 465 GLY A 609 REMARK 465 PRO A 610 REMARK 465 HIS A 611 REMARK 465 HIS A 612 REMARK 465 HIS A 613 REMARK 465 HIS A 614 REMARK 465 HIS A 615 REMARK 465 HIS A 616 REMARK 465 HIS A 617 REMARK 465 HIS A 618 REMARK 465 HIS A 619 REMARK 465 HIS A 620 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 36 CG1 CG2 REMARK 470 LEU A 71 CG CD1 CD2 REMARK 470 SER A 105 OG REMARK 470 LYS A 145 CG CD CE NZ REMARK 470 LYS A1002 CG CD CE NZ REMARK 470 ASP A1036 CG OD1 OD2 REMARK 470 GLU A 601 CG CD OE1 OE2 REMARK 470 PHE A 602 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 31 109.90 -38.65 REMARK 500 HIS A 72 -113.51 -139.54 REMARK 500 TYR A 74 -63.91 72.11 REMARK 500 ASP A 188 4.07 -68.53 REMARK 500 LEU A 211 -63.85 -139.86 REMARK 500 CYS A1042 -13.01 -146.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 OLC A 1202 REMARK 610 OLC A 1203 REMARK 610 OLC A 1204 REMARK 610 OLC A 1205 REMARK 610 OLC A 1206 REMARK 610 OLC A 1207 REMARK 610 OLC A 1208 REMARK 610 OLC A 1209 REMARK 610 OLC A 1210 REMARK 610 OLC A 1211 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1006 SG REMARK 620 2 CYS A1009 SG 103.7 REMARK 620 3 CYS A1039 SG 106.4 114.6 REMARK 620 4 CYS A1042 SG 111.8 114.5 105.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 1213 DBREF 6LI2 A 17 235 UNP Q9Y2T5 GPR52_HUMAN 17 235 DBREF 6LI2 A 1002 1054 UNP P00268 RUBR_CLOPA 2 54 DBREF 6LI2 A 265 340 UNP Q9Y2T5 GPR52_HUMAN 265 340 SEQADV 6LI2 GLY A 16 UNP Q9Y2T5 EXPRESSION TAG SEQADV 6LI2 TRP A 130 UNP Q9Y2T5 ALA 130 CONFLICT SEQADV 6LI2 MET A 1001 UNP Q9Y2T5 LINKER SEQADV 6LI2 TYR A 263 UNP P00268 LINKER SEQADV 6LI2 LEU A 264 UNP P00268 LINKER SEQADV 6LI2 GLN A 278 UNP Q9Y2T5 TRP 278 ENGINEERED MUTATION SEQADV 6LI2 PRO A 314 UNP Q9Y2T5 CYS 314 ENGINEERED MUTATION SEQADV 6LI2 ALA A 318 UNP Q9Y2T5 SER 318 ENGINEERED MUTATION SEQADV 6LI2 ASP A 321 UNP Q9Y2T5 ASN 321 ENGINEERED MUTATION SEQADV 6LI2 THR A 323 UNP Q9Y2T5 VAL 323 ENGINEERED MUTATION SEQADV 6LI2 GLU A 601 UNP Q9Y2T5 EXPRESSION TAG SEQADV 6LI2 PHE A 602 UNP Q9Y2T5 EXPRESSION TAG SEQADV 6LI2 LEU A 603 UNP Q9Y2T5 EXPRESSION TAG SEQADV 6LI2 GLU A 604 UNP Q9Y2T5 EXPRESSION TAG SEQADV 6LI2 VAL A 605 UNP Q9Y2T5 EXPRESSION TAG SEQADV 6LI2 LEU A 606 UNP Q9Y2T5 EXPRESSION TAG SEQADV 6LI2 PHE A 607 UNP Q9Y2T5 EXPRESSION TAG SEQADV 6LI2 GLN A 608 UNP Q9Y2T5 EXPRESSION TAG SEQADV 6LI2 GLY A 609 UNP Q9Y2T5 EXPRESSION TAG SEQADV 6LI2 PRO A 610 UNP Q9Y2T5 EXPRESSION TAG SEQADV 6LI2 HIS A 611 UNP Q9Y2T5 EXPRESSION TAG SEQADV 6LI2 HIS A 612 UNP Q9Y2T5 EXPRESSION TAG SEQADV 6LI2 HIS A 613 UNP Q9Y2T5 EXPRESSION TAG SEQADV 6LI2 HIS A 614 UNP Q9Y2T5 EXPRESSION TAG SEQADV 6LI2 HIS A 615 UNP Q9Y2T5 EXPRESSION TAG SEQADV 6LI2 HIS A 616 UNP Q9Y2T5 EXPRESSION TAG SEQADV 6LI2 HIS A 617 UNP Q9Y2T5 EXPRESSION TAG SEQADV 6LI2 HIS A 618 UNP Q9Y2T5 EXPRESSION TAG SEQADV 6LI2 HIS A 619 UNP Q9Y2T5 EXPRESSION TAG SEQADV 6LI2 HIS A 620 UNP Q9Y2T5 EXPRESSION TAG SEQRES 1 A 372 GLY GLY ILE VAL ASN VAL SER GLU ARG HIS SER CYS PRO SEQRES 2 A 372 LEU GLY PHE GLY HIS TYR SER VAL VAL ASP VAL CYS ILE SEQRES 3 A 372 PHE GLU THR VAL VAL ILE VAL LEU LEU THR PHE LEU ILE SEQRES 4 A 372 ILE ALA GLY ASN LEU THR VAL ILE PHE VAL PHE HIS CYS SEQRES 5 A 372 ALA PRO LEU LEU HIS HIS TYR THR THR SER TYR PHE ILE SEQRES 6 A 372 GLN THR MET ALA TYR ALA ASP LEU PHE VAL GLY VAL SER SEQRES 7 A 372 CYS LEU VAL PRO THR LEU SER LEU LEU HIS TYR SER THR SEQRES 8 A 372 GLY VAL HIS GLU SER LEU THR CYS GLN VAL PHE GLY TYR SEQRES 9 A 372 ILE ILE SER VAL LEU LYS SER VAL SER MET TRP CYS LEU SEQRES 10 A 372 ALA CYS ILE SER VAL ASP ARG TYR LEU ALA ILE THR LYS SEQRES 11 A 372 PRO LEU SER TYR ASN GLN LEU VAL THR PRO CYS ARG LEU SEQRES 12 A 372 ARG ILE CYS ILE ILE LEU ILE TRP ILE TYR SER CYS LEU SEQRES 13 A 372 ILE PHE LEU PRO SER PHE PHE GLY TRP GLY LYS PRO GLY SEQRES 14 A 372 TYR HIS GLY ASP ILE PHE GLU TRP CYS ALA THR SER TRP SEQRES 15 A 372 LEU THR SER ALA TYR PHE THR GLY PHE ILE VAL CYS LEU SEQRES 16 A 372 LEU TYR ALA PRO ALA ALA PHE VAL VAL CYS PHE THR TYR SEQRES 17 A 372 PHE HIS ILE PHE LYS ILE CYS ARG GLN HIS THR LYS MET SEQRES 18 A 372 LYS LYS TYR THR CYS THR VAL CYS GLY TYR ILE TYR ASN SEQRES 19 A 372 PRO GLU ASP GLY ASP PRO ASP ASN GLY VAL ASN PRO GLY SEQRES 20 A 372 THR ASP PHE LYS ASP ILE PRO ASP ASP TRP VAL CYS PRO SEQRES 21 A 372 LEU CYS GLY VAL GLY LYS ASP GLN PHE GLU GLU VAL GLU SEQRES 22 A 372 GLU TYR LEU MET VAL LEU PHE ARG ILE THR SER VAL PHE SEQRES 23 A 372 TYR MET LEU GLN LEU PRO TYR ILE ILE TYR PHE LEU LEU SEQRES 24 A 372 GLU SER SER ARG VAL LEU ASP ASN PRO THR LEU SER PHE SEQRES 25 A 372 LEU THR THR TRP LEU ALA ILE SER ASN SER PHE CYS ASN SEQRES 26 A 372 PRO VAL ILE TYR ALA LEU SER ASP SER THR PHE ARG LEU SEQRES 27 A 372 GLY LEU ARG ARG LEU SER GLU THR MET CYS THR SER CYS SEQRES 28 A 372 MET GLU PHE LEU GLU VAL LEU PHE GLN GLY PRO HIS HIS SEQRES 29 A 372 HIS HIS HIS HIS HIS HIS HIS HIS HET ZN A1201 1 HET OLC A1202 14 HET OLC A1203 15 HET OLC A1204 15 HET OLC A1205 21 HET OLC A1206 12 HET OLC A1207 15 HET OLC A1208 12 HET OLC A1209 15 HET OLC A1210 13 HET OLC A1211 12 HET OLC A1212 25 HET PEG A1213 7 HETNAM ZN ZINC ION HETNAM OLC (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN OLC 1-OLEOYL-R-GLYCEROL FORMUL 2 ZN ZN 2+ FORMUL 3 OLC 11(C21 H40 O4) FORMUL 14 PEG C4 H10 O3 FORMUL 15 HOH *18(H2 O) HELIX 1 AA1 CYS A 40 PHE A 65 1 26 HELIX 2 AA2 TYR A 74 CYS A 94 1 21 HELIX 3 AA3 CYS A 94 LEU A 101 1 8 HELIX 4 AA4 HIS A 109 LYS A 145 1 37 HELIX 5 AA5 SER A 148 VAL A 153 1 6 HELIX 6 AA6 CYS A 156 PHE A 173 1 18 HELIX 7 AA7 LEU A 174 GLY A 179 5 6 HELIX 8 AA8 PHE A 190 SER A 196 1 7 HELIX 9 AA9 SER A 200 LEU A 211 1 12 HELIX 10 AB1 LEU A 211 ARG A 231 1 21 HELIX 11 AB2 ASP A 1019 GLY A 1023 5 5 HELIX 12 AB3 ASP A 1029 ILE A 1033 5 5 HELIX 13 AB4 GLY A 1045 ASP A 1047 5 3 HELIX 14 AB5 GLU A 1054 GLN A 278 1 17 HELIX 15 AB6 GLN A 278 SER A 290 1 13 HELIX 16 AB7 ASN A 295 SER A 308 1 14 HELIX 17 AB8 SER A 308 ASP A 321 1 14 HELIX 18 AB9 ASP A 321 LEU A 603 1 23 SHEET 1 AA1 3 ILE A1012 TYR A1013 0 SHEET 2 AA1 3 TYR A1004 CYS A1006 -1 N TYR A1004 O TYR A1013 SHEET 3 AA1 3 PHE A1049 GLU A1051 -1 O GLU A1050 N THR A1005 SSBOND 1 CYS A 27 CYS A 40 1555 1555 2.03 SSBOND 2 CYS A 114 CYS A 193 1555 1555 2.05 LINK SG CYS A1006 ZN ZN A1201 1555 1555 2.28 LINK SG CYS A1009 ZN ZN A1201 1555 1555 2.35 LINK SG CYS A1039 ZN ZN A1201 1555 1555 2.36 LINK SG CYS A1042 ZN ZN A1201 1555 1555 2.34 SITE 1 AC1 4 CYS A1006 CYS A1009 CYS A1039 CYS A1042 SITE 1 AC2 4 SER A 272 VAL A 273 MET A 276 LEU A 277 SITE 1 AC3 2 ILE A 316 HOH A1301 SITE 1 AC4 5 VAL A 37 VAL A 39 ILE A 41 THR A 44 SITE 2 AC4 5 HIS A 103 SITE 1 AC5 5 TYR A 202 SER A 289 LEU A 328 ARG A 329 SITE 2 AC5 5 SER A 332 SITE 1 AC6 5 THR A 60 VAL A 64 THR A 323 PHE A 324 SITE 2 AC6 5 GLY A 327 SITE 1 AC7 3 THR A 60 VAL A 64 OLC A1208 SITE 1 AC8 1 OLC A1207 SITE 1 AC9 3 TRP A 180 TYR A 202 CYS A 209 SITE 1 AD1 3 HIS A 33 ASP A 38 PHE A 42 SITE 1 AD2 2 THR A 297 LEU A 301 SITE 1 AD3 3 ARG A 24 GLU A 191 ASP A1036 CRYST1 77.223 113.229 138.615 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012950 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008832 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007214 0.00000