HEADER CYTOKINE 20-DEC-19 6LKV TITLE STRUCTURAL AND FUNCTIONAL INSIGHTS INTO MACROPHAGE MIGRATION TITLE 2 INHIBITORY FACTOR FROM ONCOMELANIA HUPENSIS, THE INTERMEDIATE HOST OF TITLE 3 SCHISTOSOMA JAPONICUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: MACROPHAGE MIGRATION INHIBITORY FACTOR; COMPND 3 CHAIN: F; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: MACROPHAGE MIGRATION INHIBITORY FACTOR; COMPND 7 CHAIN: A; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: MACROPHAGE MIGRATION INHIBITORY FACTOR; COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 4; COMPND 14 MOLECULE: MACROPHAGE MIGRATION INHIBITORY FACTOR; COMPND 15 CHAIN: C; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ONCOMELANIA HUPENSIS; SOURCE 3 ORGANISM_TAXID: 56141; SOURCE 4 GENE: MIF; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: ONCOMELANIA HUPENSIS; SOURCE 9 ORGANISM_TAXID: 56141; SOURCE 10 GENE: MIF; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: ONCOMELANIA HUPENSIS; SOURCE 15 ORGANISM_TAXID: 56141; SOURCE 16 GENE: MIF; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 19 MOL_ID: 4; SOURCE 20 ORGANISM_SCIENTIFIC: ONCOMELANIA HUPENSIS; SOURCE 21 ORGANISM_TAXID: 56141; SOURCE 22 GENE: MIF; SOURCE 23 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 24 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ONCOMELANIA HUPENSIS MACROPHAGE MIGRATION INHIBITORY FACTOR, KEYWDS 2 ISOMERASE, BETA-ALPHA-BETA FOLD, CYTOKINE EXPDTA X-RAY DIFFRACTION AUTHOR Z.M.SU,X.Y.TIAN,H.J.LI,Z.M.WEI,L.F.CHEN,H.X.REN,W.F.PENG,C.T.TANG REVDAT 2 22-NOV-23 6LKV 1 REMARK REVDAT 1 22-JUL-20 6LKV 0 JRNL AUTH Z.SU,X.TIAN,H.LI,Z.WEI,L.CHEN,S.WANG,H.REN,W.PENG,C.TANG, JRNL AUTH 2 T.LIN,S.HUANG JRNL TITL STRUCTURAL AND FUNCTIONAL INSIGHTS INTO MACROPHAGE MIGRATION JRNL TITL 2 INHIBITORY FACTOR FROM ONCOMELANIA HUPENSIS, THE JRNL TITL 3 INTERMEDIATE HOST OF SCHISTOSOMA JAPONICUM. JRNL REF BIOCHEM.J. V. 477 2133 2020 JRNL REFN ESSN 1470-8728 JRNL PMID 32484230 JRNL DOI 10.1042/BCJ20200068 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 33834 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1782 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2469 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.2220 REMARK 3 BIN FREE R VALUE SET COUNT : 128 REMARK 3 BIN FREE R VALUE : 0.2600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4382 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 424 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.08000 REMARK 3 B22 (A**2) : -0.08000 REMARK 3 B33 (A**2) : 0.25000 REMARK 3 B12 (A**2) : -0.04000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.232 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.191 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.127 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.026 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4496 ; 0.010 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4219 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6088 ; 1.509 ; 1.635 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9760 ; 1.313 ; 1.568 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 559 ; 6.484 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 250 ;34.273 ;21.640 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 783 ;14.554 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;19.083 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 612 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5018 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 942 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6LKV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-DEC-19. REMARK 100 THE DEPOSITION ID IS D_1300014954. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JAN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97849 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35642 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 20.00 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 55.2500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.47300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5BSI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% (W/V) MPD, 0.1 M SODIUM ACETATE REMARK 280 (PH 4.6), AND 20 MM CALCIUM CHLORIDE, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -62.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: F, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 55.42300 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 95.99545 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -55.42300 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 95.99545 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL C 201 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 373 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP F 115 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG F 67 -28.45 76.95 REMARK 500 VAL F 116 -25.63 131.60 REMARK 500 ARG A 67 -29.23 74.39 REMARK 500 LEU A 113 -168.89 -80.00 REMARK 500 ALA A 137 -20.79 71.99 REMARK 500 ARG B 67 -27.66 78.28 REMARK 500 ARG C 67 -30.04 75.91 REMARK 500 HIS C 137 -33.93 83.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL C 201 REMARK 999 REMARK 999 SEQUENCE REMARK 999 IT MAY BE SEQUENCING ERRORS OR EXIST MUTATIONS OF ONCOMELANIA REMARK 999 HUPENSIS. FROM DENSITY MAP OF STRUCTURE, IT SEEMS THAT RESIDUES OF REMARK 999 NUMBER 89, 90, 125 ARE CORRECT. DBREF1 6LKV F 1 131 UNP A0A1U9W5E8_9CAEN DBREF2 6LKV F A0A1U9W5E8 1 131 DBREF1 6LKV A 1 131 UNP A0A1U9W5E8_9CAEN DBREF2 6LKV A A0A1U9W5E8 1 131 DBREF1 6LKV B 1 131 UNP A0A1U9W5E8_9CAEN DBREF2 6LKV B A0A1U9W5E8 1 131 DBREF1 6LKV C 1 131 UNP A0A1U9W5E8_9CAEN DBREF2 6LKV C A0A1U9W5E8 1 131 SEQADV 6LKV ASN F 89 UNP A0A1U9W5E LYS 89 SEE SEQUENCE DETAILS SEQADV 6LKV VAL F 90 UNP A0A1U9W5E ILE 90 SEE SEQUENCE DETAILS SEQADV 6LKV ILE F 125 UNP A0A1U9W5E ASN 125 SEE SEQUENCE DETAILS SEQADV 6LKV TYR F 132 UNP A0A1U9W5E EXPRESSION TAG SEQADV 6LKV LEU F 133 UNP A0A1U9W5E EXPRESSION TAG SEQADV 6LKV HIS F 134 UNP A0A1U9W5E EXPRESSION TAG SEQADV 6LKV HIS F 135 UNP A0A1U9W5E EXPRESSION TAG SEQADV 6LKV HIS F 136 UNP A0A1U9W5E EXPRESSION TAG SEQADV 6LKV HIS F 137 UNP A0A1U9W5E EXPRESSION TAG SEQADV 6LKV HIS F 138 UNP A0A1U9W5E EXPRESSION TAG SEQADV 6LKV HIS F 139 UNP A0A1U9W5E EXPRESSION TAG SEQADV 6LKV HIS F 140 UNP A0A1U9W5E EXPRESSION TAG SEQADV 6LKV ALA F 141 UNP A0A1U9W5E EXPRESSION TAG SEQADV 6LKV ASN A 89 UNP A0A1U9W5E LYS 89 SEE SEQUENCE DETAILS SEQADV 6LKV VAL A 90 UNP A0A1U9W5E ILE 90 SEE SEQUENCE DETAILS SEQADV 6LKV ILE A 125 UNP A0A1U9W5E ASN 125 SEE SEQUENCE DETAILS SEQADV 6LKV TYR A 132 UNP A0A1U9W5E EXPRESSION TAG SEQADV 6LKV LEU A 133 UNP A0A1U9W5E EXPRESSION TAG SEQADV 6LKV ALA A 134 UNP A0A1U9W5E EXPRESSION TAG SEQADV 6LKV ALA A 135 UNP A0A1U9W5E EXPRESSION TAG SEQADV 6LKV HIS A 136 UNP A0A1U9W5E EXPRESSION TAG SEQADV 6LKV ALA A 137 UNP A0A1U9W5E EXPRESSION TAG SEQADV 6LKV ALA A 138 UNP A0A1U9W5E EXPRESSION TAG SEQADV 6LKV ASN B 89 UNP A0A1U9W5E LYS 89 SEE SEQUENCE DETAILS SEQADV 6LKV VAL B 90 UNP A0A1U9W5E ILE 90 SEE SEQUENCE DETAILS SEQADV 6LKV ILE B 125 UNP A0A1U9W5E ASN 125 SEE SEQUENCE DETAILS SEQADV 6LKV TYR B 132 UNP A0A1U9W5E EXPRESSION TAG SEQADV 6LKV LEU B 133 UNP A0A1U9W5E EXPRESSION TAG SEQADV 6LKV HIS B 134 UNP A0A1U9W5E EXPRESSION TAG SEQADV 6LKV HIS B 135 UNP A0A1U9W5E EXPRESSION TAG SEQADV 6LKV HIS B 136 UNP A0A1U9W5E EXPRESSION TAG SEQADV 6LKV HIS B 137 UNP A0A1U9W5E EXPRESSION TAG SEQADV 6LKV HIS B 138 UNP A0A1U9W5E EXPRESSION TAG SEQADV 6LKV HIS B 139 UNP A0A1U9W5E EXPRESSION TAG SEQADV 6LKV HIS B 140 UNP A0A1U9W5E EXPRESSION TAG SEQADV 6LKV ASN C 89 UNP A0A1U9W5E LYS 89 SEE SEQUENCE DETAILS SEQADV 6LKV VAL C 90 UNP A0A1U9W5E ILE 90 SEE SEQUENCE DETAILS SEQADV 6LKV ILE C 125 UNP A0A1U9W5E ASN 125 SEE SEQUENCE DETAILS SEQADV 6LKV TYR C 132 UNP A0A1U9W5E EXPRESSION TAG SEQADV 6LKV LEU C 133 UNP A0A1U9W5E EXPRESSION TAG SEQADV 6LKV HIS C 134 UNP A0A1U9W5E EXPRESSION TAG SEQADV 6LKV HIS C 135 UNP A0A1U9W5E EXPRESSION TAG SEQADV 6LKV HIS C 136 UNP A0A1U9W5E EXPRESSION TAG SEQADV 6LKV HIS C 137 UNP A0A1U9W5E EXPRESSION TAG SEQADV 6LKV HIS C 138 UNP A0A1U9W5E EXPRESSION TAG SEQRES 1 F 141 MET PRO VAL ILE THR VAL ASN THR ASN VAL ALA GLU LYS SEQRES 2 F 141 SER ILE PRO VAL PHE PHE GLN ALA ALA LEU THR ASN MET SEQRES 3 F 141 MET THR LYS ALA LEU GLN LYS PRO LYS GLU VAL MET PHE SEQRES 4 F 141 VAL ASP LEU ARG SER GLY ALA ASN ILE MET MET GLY GLY SEQRES 5 F 141 ASP ARG ASN PRO CYS VAL PHE ALA THR VAL GLU CYS ILE SEQRES 6 F 141 GLY ARG LEU ASN PRO THR SER ASN LEU ALA MET ALA ARG SEQRES 7 F 141 ASP MET GLU ASP MET PHE ILE GLU HIS LEU ASN VAL ARG SEQRES 8 F 141 ARG GLU ARG ILE VAL ILE ARG PHE ILE PRO VAL PRO ALA SEQRES 9 F 141 LEU PHE CYS SER PHE ASN GLY ALA LEU HIS ASP VAL SER SEQRES 10 F 141 ILE GLU ARG ASP GLU ASP ILE ILE SER GLN ALA ILE ALA SEQRES 11 F 141 GLU TYR LEU HIS HIS HIS HIS HIS HIS HIS ALA SEQRES 1 A 138 MET PRO VAL ILE THR VAL ASN THR ASN VAL ALA GLU LYS SEQRES 2 A 138 SER ILE PRO VAL PHE PHE GLN ALA ALA LEU THR ASN MET SEQRES 3 A 138 MET THR LYS ALA LEU GLN LYS PRO LYS GLU VAL MET PHE SEQRES 4 A 138 VAL ASP LEU ARG SER GLY ALA ASN ILE MET MET GLY GLY SEQRES 5 A 138 ASP ARG ASN PRO CYS VAL PHE ALA THR VAL GLU CYS ILE SEQRES 6 A 138 GLY ARG LEU ASN PRO THR SER ASN LEU ALA MET ALA ARG SEQRES 7 A 138 ASP MET GLU ASP MET PHE ILE GLU HIS LEU ASN VAL ARG SEQRES 8 A 138 ARG GLU ARG ILE VAL ILE ARG PHE ILE PRO VAL PRO ALA SEQRES 9 A 138 LEU PHE CYS SER PHE ASN GLY ALA LEU HIS ASP VAL SER SEQRES 10 A 138 ILE GLU ARG ASP GLU ASP ILE ILE SER GLN ALA ILE ALA SEQRES 11 A 138 GLU TYR LEU ALA ALA HIS ALA ALA SEQRES 1 B 140 MET PRO VAL ILE THR VAL ASN THR ASN VAL ALA GLU LYS SEQRES 2 B 140 SER ILE PRO VAL PHE PHE GLN ALA ALA LEU THR ASN MET SEQRES 3 B 140 MET THR LYS ALA LEU GLN LYS PRO LYS GLU VAL MET PHE SEQRES 4 B 140 VAL ASP LEU ARG SER GLY ALA ASN ILE MET MET GLY GLY SEQRES 5 B 140 ASP ARG ASN PRO CYS VAL PHE ALA THR VAL GLU CYS ILE SEQRES 6 B 140 GLY ARG LEU ASN PRO THR SER ASN LEU ALA MET ALA ARG SEQRES 7 B 140 ASP MET GLU ASP MET PHE ILE GLU HIS LEU ASN VAL ARG SEQRES 8 B 140 ARG GLU ARG ILE VAL ILE ARG PHE ILE PRO VAL PRO ALA SEQRES 9 B 140 LEU PHE CYS SER PHE ASN GLY ALA LEU HIS ASP VAL SER SEQRES 10 B 140 ILE GLU ARG ASP GLU ASP ILE ILE SER GLN ALA ILE ALA SEQRES 11 B 140 GLU TYR LEU HIS HIS HIS HIS HIS HIS HIS SEQRES 1 C 138 MET PRO VAL ILE THR VAL ASN THR ASN VAL ALA GLU LYS SEQRES 2 C 138 SER ILE PRO VAL PHE PHE GLN ALA ALA LEU THR ASN MET SEQRES 3 C 138 MET THR LYS ALA LEU GLN LYS PRO LYS GLU VAL MET PHE SEQRES 4 C 138 VAL ASP LEU ARG SER GLY ALA ASN ILE MET MET GLY GLY SEQRES 5 C 138 ASP ARG ASN PRO CYS VAL PHE ALA THR VAL GLU CYS ILE SEQRES 6 C 138 GLY ARG LEU ASN PRO THR SER ASN LEU ALA MET ALA ARG SEQRES 7 C 138 ASP MET GLU ASP MET PHE ILE GLU HIS LEU ASN VAL ARG SEQRES 8 C 138 ARG GLU ARG ILE VAL ILE ARG PHE ILE PRO VAL PRO ALA SEQRES 9 C 138 LEU PHE CYS SER PHE ASN GLY ALA LEU HIS ASP VAL SER SEQRES 10 C 138 ILE GLU ARG ASP GLU ASP ILE ILE SER GLN ALA ILE ALA SEQRES 11 C 138 GLU TYR LEU HIS HIS HIS HIS HIS HET CL B 201 1 HET SO4 B 202 5 HET CL C 201 1 HETNAM CL CHLORIDE ION HETNAM SO4 SULFATE ION FORMUL 5 CL 2(CL 1-) FORMUL 6 SO4 O4 S 2- FORMUL 8 HOH *424(H2 O) HELIX 1 AA1 ALA F 11 ILE F 15 5 5 HELIX 2 AA2 PHE F 18 GLN F 32 1 15 HELIX 3 AA3 PRO F 34 VAL F 37 5 4 HELIX 4 AA4 ASN F 69 ASN F 89 1 21 HELIX 5 AA5 ARG F 91 GLU F 93 5 3 HELIX 6 AA6 PRO F 103 LEU F 105 5 3 HELIX 7 AA7 VAL F 116 ARG F 120 5 5 HELIX 8 AA8 ASP F 121 HIS F 136 1 16 HELIX 9 AA9 ALA A 11 ILE A 15 5 5 HELIX 10 AB1 PHE A 18 GLN A 32 1 15 HELIX 11 AB2 PRO A 34 VAL A 37 5 4 HELIX 12 AB3 ASN A 69 ASN A 89 1 21 HELIX 13 AB4 ARG A 91 GLU A 93 5 3 HELIX 14 AB5 PRO A 103 LEU A 105 5 3 HELIX 15 AB6 ASP A 115 ARG A 120 5 6 HELIX 16 AB7 ASP A 121 ALA A 137 1 17 HELIX 17 AB8 ALA B 11 ILE B 15 5 5 HELIX 18 AB9 PHE B 18 GLN B 32 1 15 HELIX 19 AC1 PRO B 34 VAL B 37 5 4 HELIX 20 AC2 ASN B 69 ASN B 89 1 21 HELIX 21 AC3 ARG B 91 GLU B 93 5 3 HELIX 22 AC4 PRO B 103 LEU B 105 5 3 HELIX 23 AC5 ASP B 115 ARG B 120 5 6 HELIX 24 AC6 ASP B 121 HIS B 136 1 16 HELIX 25 AC7 ALA C 11 ILE C 15 5 5 HELIX 26 AC8 PHE C 18 GLN C 32 1 15 HELIX 27 AC9 PRO C 34 MET C 38 5 5 HELIX 28 AD1 ASN C 69 ASN C 89 1 21 HELIX 29 AD2 ARG C 91 GLU C 93 5 3 HELIX 30 AD3 PRO C 103 CYS C 107 5 5 HELIX 31 AD4 ASP C 115 ARG C 120 5 6 HELIX 32 AD5 ASP C 121 HIS C 137 1 17 SHEET 1 AA1 6 CYS A 107 PHE A 109 0 SHEET 2 AA1 6 ILE F 95 PRO F 101 -1 N ILE F 97 O SER A 108 SHEET 3 AA1 6 VAL F 58 CYS F 64 1 N VAL F 62 O ILE F 100 SHEET 4 AA1 6 VAL F 3 THR F 8 -1 N VAL F 3 O GLU F 63 SHEET 5 AA1 6 PHE F 39 ARG F 43 1 O ARG F 43 N VAL F 6 SHEET 6 AA1 6 ASN B 47 MET B 50 -1 O ASN B 47 N LEU F 42 SHEET 1 AA2 6 ILE F 48 MET F 50 0 SHEET 2 AA2 6 PHE A 39 ARG A 43 -1 O VAL A 40 N MET F 49 SHEET 3 AA2 6 VAL A 3 THR A 8 1 N VAL A 6 O ARG A 43 SHEET 4 AA2 6 VAL A 58 CYS A 64 -1 O GLU A 63 N VAL A 3 SHEET 5 AA2 6 ILE A 95 PRO A 101 1 O ILE A 100 N VAL A 62 SHEET 6 AA2 6 CYS B 107 PHE B 109 -1 O SER B 108 N ILE A 97 SHEET 1 AA3 6 CYS F 107 PHE F 109 0 SHEET 2 AA3 6 ILE B 95 PRO B 101 -1 O ILE B 97 N SER F 108 SHEET 3 AA3 6 VAL B 58 CYS B 64 1 N VAL B 62 O ILE B 100 SHEET 4 AA3 6 VAL B 3 THR B 8 -1 N VAL B 3 O GLU B 63 SHEET 5 AA3 6 PHE B 39 ARG B 43 1 O ARG B 43 N VAL B 6 SHEET 6 AA3 6 ILE A 48 MET A 50 -1 N MET A 49 O VAL B 40 SHEET 1 AA4 4 PHE C 39 ARG C 43 0 SHEET 2 AA4 4 VAL C 3 THR C 8 1 N VAL C 6 O ARG C 43 SHEET 3 AA4 4 VAL C 58 CYS C 64 -1 O GLU C 63 N VAL C 3 SHEET 4 AA4 4 ILE C 95 PRO C 101 1 O ILE C 100 N VAL C 62 CISPEP 1 MET F 1 PRO F 2 0 -13.09 CISPEP 2 MET A 1 PRO A 2 0 -12.75 CISPEP 3 MET B 1 PRO B 2 0 -12.98 CISPEP 4 MET C 1 PRO C 2 0 -13.07 SITE 1 AC1 3 ARG A 98 ARG B 98 ARG F 98 SITE 1 AC2 4 ASN A 89 ARG B 91 HIS B 135 HOH B 356 SITE 1 AC3 1 ARG C 98 CRYST1 110.846 110.846 97.653 90.00 90.00 120.00 P 3 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009022 0.005209 0.000000 0.00000 SCALE2 0.000000 0.010417 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010240 0.00000