HEADER CARBOHYDRATE 21-DEC-19 6LKY TITLE CRYSTAL STRUCTURE OF ISOCITRATE DEHYDROGENASE FROM METHYLOCOCCUS TITLE 2 CAPSULATUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE ISOCITRATE DEHYDROGENASE, NAD-DEPENDENT; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHYLOCOCCUS CAPSULATUS (STRAIN ATCC 33009 / SOURCE 3 NCIMB 11132 / BATH); SOURCE 4 ORGANISM_TAXID: 243233; SOURCE 5 STRAIN: ATCC 33009 / NCIMB 11132 / BATH; SOURCE 6 GENE: MCA3071; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ISOCITRATE DEHYDROGENASE, CARBOHYDRATE EXPDTA X-RAY DIFFRACTION AUTHOR S.HUANG,P.WANG,G.P.ZHU REVDAT 3 29-NOV-23 6LKY 1 REMARK REVDAT 2 09-NOV-22 6LKY 1 AUTHOR REVDAT 1 23-DEC-20 6LKY 0 JRNL AUTH G.P.ZHU JRNL TITL CRYSTAL STRUCTURE OF ISOCITRATE DEHYDROGENASE FROM JRNL TITL 2 METHYLOCOCCUS CAPSULATUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 42062 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.890 REMARK 3 FREE R VALUE TEST SET COUNT : 2057 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 10.0000 - 5.4200 0.99 2962 122 0.1741 0.1970 REMARK 3 2 5.4200 - 4.3100 1.00 2822 157 0.1421 0.1563 REMARK 3 3 4.3100 - 3.7600 1.00 2800 125 0.1437 0.1832 REMARK 3 4 3.7600 - 3.4200 1.00 2785 136 0.1502 0.1867 REMARK 3 5 3.4200 - 3.1700 1.00 2757 129 0.1643 0.2073 REMARK 3 6 3.1700 - 2.9900 1.00 2744 147 0.1704 0.2092 REMARK 3 7 2.9900 - 2.8400 1.00 2752 125 0.1641 0.2008 REMARK 3 8 2.8400 - 2.7100 1.00 2753 141 0.1697 0.2537 REMARK 3 9 2.7100 - 2.6100 1.00 2719 133 0.1724 0.2489 REMARK 3 10 2.6100 - 2.5200 0.99 2687 165 0.1766 0.2248 REMARK 3 11 2.5200 - 2.4400 0.97 2613 153 0.1831 0.2436 REMARK 3 12 2.4400 - 2.3700 0.94 2561 123 0.1844 0.2214 REMARK 3 13 2.3700 - 2.3100 0.90 2437 143 0.1937 0.2635 REMARK 3 14 2.3100 - 2.2500 0.87 2334 154 0.1948 0.2551 REMARK 3 15 2.2500 - 2.2000 0.83 2279 104 0.1865 0.2116 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.209 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.767 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.26 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 5425 REMARK 3 ANGLE : 1.350 7368 REMARK 3 CHIRALITY : 0.094 870 REMARK 3 PLANARITY : 0.008 956 REMARK 3 DIHEDRAL : 8.752 4494 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN 'A' AND (RESID 2 THROUGH 14 OR REMARK 3 RESID 16 THROUGH 68 OR RESID 70 THROUGH REMARK 3 77 OR RESID 79 THROUGH 131 OR RESID 133 REMARK 3 THROUGH 209 OR RESID 211 THROUGH 213 OR REMARK 3 RESID 215 THROUGH 253 OR RESID 255 REMARK 3 THROUGH 301 OR RESID 303 THROUGH 339 OR REMARK 3 RESID 501 THROUGH 601)) REMARK 3 SELECTION : (CHAIN 'B' AND (RESID 2 THROUGH 14 OR REMARK 3 RESID 16 THROUGH 68 OR RESID 70 THROUGH REMARK 3 77 OR RESID 79 THROUGH 131 OR RESID 133 REMARK 3 THROUGH 209 OR RESID 211 THROUGH 213 OR REMARK 3 RESID 215 THROUGH 253 OR RESID 255 REMARK 3 THROUGH 301 OR RESID 303 THROUGH 339 OR REMARK 3 RESID 401 THROUGH 601)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6LKY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-DEC-19. REMARK 100 THE DEPOSITION ID IS D_1300014993. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-NOV-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.988 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43531 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.900 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : 0.05300 REMARK 200 FOR THE DATA SET : 30.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.30000 REMARK 200 R SYM FOR SHELL (I) : 0.28100 REMARK 200 FOR SHELL : 9.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5GRE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 290 MM CALCIUM ACETATE MONOHYDRATE, REMARK 280 100 MM HEPES (PH 7.0), 10.8% (W/V) PEG 4000, 8% GLYCEROL, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 84.58400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.89700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 84.58400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.89700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -57.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 340 REMARK 465 ALA B 340 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU B 191 O HOH B 501 1.86 REMARK 500 OE2 GLU B 151 O HOH B 502 1.89 REMARK 500 O HOH A 746 O HOH A 752 1.91 REMARK 500 NH1 ARG A 299 O HOH A 601 1.91 REMARK 500 NZ LYS B 148 O HOH B 503 1.93 REMARK 500 O HOH B 599 O HOH B 679 1.97 REMARK 500 OE1 GLN B 328 O HOH B 504 1.97 REMARK 500 O HOH A 645 O HOH A 739 2.02 REMARK 500 O HOH B 708 O HOH B 712 2.02 REMARK 500 O HOH B 651 O HOH B 673 2.05 REMARK 500 O ASN B 118 O HOH B 505 2.07 REMARK 500 O HOH B 604 O HOH B 701 2.07 REMARK 500 O HOH B 533 O HOH B 554 2.08 REMARK 500 O HOH B 588 O HOH B 631 2.09 REMARK 500 O HOH A 684 O HOH A 735 2.10 REMARK 500 O ACE A 502 O HOH A 602 2.11 REMARK 500 O HOH B 705 O HOH B 715 2.11 REMARK 500 O HOH B 513 O HOH B 664 2.12 REMARK 500 O HOH B 668 O HOH B 688 2.14 REMARK 500 OE2 GLU A 309 O HOH A 603 2.14 REMARK 500 OE1 GLU B 135 O HOH B 506 2.15 REMARK 500 N MET B 1 O HOH B 507 2.18 REMARK 500 N MET B 1 O HOH B 507 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 167 OE2 GLU A 335 3556 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 338 CB - CA - C ANGL. DEV. = 12.2 DEGREES REMARK 500 ARG A 338 CB - CG - CD ANGL. DEV. = 16.2 DEGREES REMARK 500 ARG A 338 CG - CD - NE ANGL. DEV. = -29.5 DEGREES REMARK 500 ARG A 338 NE - CZ - NH1 ANGL. DEV. = 8.9 DEGREES REMARK 500 ARG A 338 NE - CZ - NH2 ANGL. DEV. = -14.5 DEGREES REMARK 500 GLU B 191 N - CA - CB ANGL. DEV. = -11.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 62 -4.64 76.58 REMARK 500 ASN A 111 82.33 -154.39 REMARK 500 GLU A 120 -136.16 -137.11 REMARK 500 ASP A 133 -119.77 57.22 REMARK 500 GLN A 216 65.68 -157.00 REMARK 500 ASP A 221 -93.06 -123.80 REMARK 500 SER A 313 63.39 -111.95 REMARK 500 ARG B 62 -4.39 76.13 REMARK 500 ASN B 111 81.37 -154.13 REMARK 500 GLU B 120 -136.83 -137.25 REMARK 500 ASP B 133 -114.60 55.08 REMARK 500 ASP B 133 -114.60 55.84 REMARK 500 GLN B 216 72.09 -156.96 REMARK 500 ASP B 221 -92.78 -121.98 REMARK 500 SER B 313 63.47 -111.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 GLN A 216 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 718 DISTANCE = 5.84 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACE A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CIT A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACE A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACE B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACE B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACE B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CIT B 406 DBREF 6LKY A 1 340 UNP Q602J2 Q602J2_METCA 1 340 DBREF 6LKY B 1 340 UNP Q602J2 Q602J2_METCA 1 340 SEQADV 6LKY LEU A 88 UNP Q602J2 PHE 88 ENGINEERED MUTATION SEQADV 6LKY LEU B 88 UNP Q602J2 PHE 88 ENGINEERED MUTATION SEQRES 1 A 340 MET HIS LYS ILE THR LEU ILE PRO GLY ASP GLY ILE GLY SEQRES 2 A 340 PRO SER ILE VAL ASP ALA ALA VAL LYS VAL ILE GLU ALA SEQRES 3 A 340 THR GLY VAL GLN VAL GLN TRP ASP THR GLN SER ALA GLY SEQRES 4 A 340 MET ALA ALA VAL GLU LYS PHE GLY THR PRO LEU PRO ASP SEQRES 5 A 340 ALA THR LEU ASP SER ILE ARG ALA ASN ARG ILE CYS PHE SEQRES 6 A 340 LYS GLY PRO LEU THR THR PRO VAL GLY GLY GLY TYR ARG SEQRES 7 A 340 SER VAL ASN VAL THR LEU ARG GLN ALA LEU ASN LEU TYR SEQRES 8 A 340 ALA ASN VAL ARG PRO ALA ILE SER PHE GLU GLY THR ASP SEQRES 9 A 340 THR ALA PHE SER ASP VAL ASN LEU VAL THR VAL ARG GLU SEQRES 10 A 340 ASN THR GLU GLY LEU TYR ALA GLY ILE GLU HIS PHE ILE SEQRES 11 A 340 LYS VAL ASP GLU GLU LYS ILE ALA ALA GLU SER ILE ALA SEQRES 12 A 340 VAL VAL THR ARG LYS GLY SER GLU ARG ILE ILE ARG TYR SEQRES 13 A 340 ALA PHE ASP TYR ALA ARG ARG ALA ARG ARG LYS LYS VAL SEQRES 14 A 340 THR LEU VAL HIS LYS ALA ASN ILE LEU LYS CYS THR SER SEQRES 15 A 340 GLY LEU PHE LEU GLU ILE GLY ARG GLU ILE ALA LYS GLU SEQRES 16 A 340 TYR PRO ASP ILE GLU PHE ASP ASP ARG ILE VAL ASP ALA SEQRES 17 A 340 CYS SER MET GLN MET VAL MET GLN PRO GLN ARG PHE ASP SEQRES 18 A 340 VAL LEU VAL THR THR ASN LEU PHE GLY ASP ILE LEU SER SEQRES 19 A 340 ASP LEU ALA ALA GLY LEU ILE GLY GLY LEU GLY LEU THR SEQRES 20 A 340 ALA GLY ALA ASN ILE GLY THR ASP ALA ALA LEU PHE GLU SEQRES 21 A 340 ALA VAL HIS GLY SER ALA PRO ASP ILE ALA ASP LYS GLY SEQRES 22 A 340 ILE ALA ASN PRO THR ALA MET ILE MET ALA GLY ALA MET SEQRES 23 A 340 MET LEU GLU HIS ILE GLY GLU PRO ASP ALA ALA ARG ARG SEQRES 24 A 340 ILE GLU ARG ALA VAL ARG GLU VAL ILE GLU ASP GLY ARG SEQRES 25 A 340 SER VAL THR PRO ASP LEU ALA LYS ASP SER PRO CYS GLY SEQRES 26 A 340 THR ALA GLN MET ALA GLU ALA ILE VAL GLU ARG VAL ARG SEQRES 27 A 340 GLN ALA SEQRES 1 B 340 MET HIS LYS ILE THR LEU ILE PRO GLY ASP GLY ILE GLY SEQRES 2 B 340 PRO SER ILE VAL ASP ALA ALA VAL LYS VAL ILE GLU ALA SEQRES 3 B 340 THR GLY VAL GLN VAL GLN TRP ASP THR GLN SER ALA GLY SEQRES 4 B 340 MET ALA ALA VAL GLU LYS PHE GLY THR PRO LEU PRO ASP SEQRES 5 B 340 ALA THR LEU ASP SER ILE ARG ALA ASN ARG ILE CYS PHE SEQRES 6 B 340 LYS GLY PRO LEU THR THR PRO VAL GLY GLY GLY TYR ARG SEQRES 7 B 340 SER VAL ASN VAL THR LEU ARG GLN ALA LEU ASN LEU TYR SEQRES 8 B 340 ALA ASN VAL ARG PRO ALA ILE SER PHE GLU GLY THR ASP SEQRES 9 B 340 THR ALA PHE SER ASP VAL ASN LEU VAL THR VAL ARG GLU SEQRES 10 B 340 ASN THR GLU GLY LEU TYR ALA GLY ILE GLU HIS PHE ILE SEQRES 11 B 340 LYS VAL ASP GLU GLU LYS ILE ALA ALA GLU SER ILE ALA SEQRES 12 B 340 VAL VAL THR ARG LYS GLY SER GLU ARG ILE ILE ARG TYR SEQRES 13 B 340 ALA PHE ASP TYR ALA ARG ARG ALA ARG ARG LYS LYS VAL SEQRES 14 B 340 THR LEU VAL HIS LYS ALA ASN ILE LEU LYS CYS THR SER SEQRES 15 B 340 GLY LEU PHE LEU GLU ILE GLY ARG GLU ILE ALA LYS GLU SEQRES 16 B 340 TYR PRO ASP ILE GLU PHE ASP ASP ARG ILE VAL ASP ALA SEQRES 17 B 340 CYS SER MET GLN MET VAL MET GLN PRO GLN ARG PHE ASP SEQRES 18 B 340 VAL LEU VAL THR THR ASN LEU PHE GLY ASP ILE LEU SER SEQRES 19 B 340 ASP LEU ALA ALA GLY LEU ILE GLY GLY LEU GLY LEU THR SEQRES 20 B 340 ALA GLY ALA ASN ILE GLY THR ASP ALA ALA LEU PHE GLU SEQRES 21 B 340 ALA VAL HIS GLY SER ALA PRO ASP ILE ALA ASP LYS GLY SEQRES 22 B 340 ILE ALA ASN PRO THR ALA MET ILE MET ALA GLY ALA MET SEQRES 23 B 340 MET LEU GLU HIS ILE GLY GLU PRO ASP ALA ALA ARG ARG SEQRES 24 B 340 ILE GLU ARG ALA VAL ARG GLU VAL ILE GLU ASP GLY ARG SEQRES 25 B 340 SER VAL THR PRO ASP LEU ALA LYS ASP SER PRO CYS GLY SEQRES 26 B 340 THR ALA GLN MET ALA GLU ALA ILE VAL GLU ARG VAL ARG SEQRES 27 B 340 GLN ALA HET NAD A 501 44 HET ACE A 502 3 HET CIT A 503 13 HET ACT A 504 4 HET ACE A 505 3 HET NAD B 401 44 HET ACE B 402 3 HET ACE B 403 3 HET ACE B 404 3 HET ACT B 405 4 HET CIT B 406 13 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM ACE ACETYL GROUP HETNAM CIT CITRIC ACID HETNAM ACT ACETATE ION FORMUL 3 NAD 2(C21 H27 N7 O14 P2) FORMUL 4 ACE 5(C2 H4 O) FORMUL 5 CIT 2(C6 H8 O7) FORMUL 6 ACT 2(C2 H3 O2 1-) FORMUL 14 HOH *372(H2 O) HELIX 1 AA1 ILE A 12 THR A 27 1 16 HELIX 2 AA2 ALA A 38 GLY A 47 1 10 HELIX 3 AA3 PRO A 51 ARG A 62 1 12 HELIX 4 AA4 SER A 79 LEU A 88 1 10 HELIX 5 AA5 GLU A 120 ALA A 124 5 5 HELIX 6 AA6 ARG A 147 ALA A 164 1 18 HELIX 7 AA7 CYS A 180 LYS A 194 1 15 HELIX 8 AA8 VAL A 206 GLN A 216 1 11 HELIX 9 AA9 PRO A 217 PHE A 220 5 4 HELIX 10 AB1 THR A 226 ILE A 241 1 16 HELIX 11 AB2 GLY A 243 LEU A 246 5 4 HELIX 12 AB3 PRO A 277 ILE A 291 1 15 HELIX 13 AB4 GLU A 293 GLY A 311 1 19 HELIX 14 AB5 GLY A 325 ARG A 338 1 14 HELIX 15 AB6 ILE B 12 THR B 27 1 16 HELIX 16 AB7 ALA B 38 GLY B 47 1 10 HELIX 17 AB8 PRO B 51 ARG B 62 1 12 HELIX 18 AB9 SER B 79 LEU B 88 1 10 HELIX 19 AC1 ARG B 147 ALA B 164 1 18 HELIX 20 AC2 CYS B 180 LYS B 194 1 15 HELIX 21 AC3 VAL B 206 GLN B 216 1 11 HELIX 22 AC4 PRO B 217 PHE B 220 5 4 HELIX 23 AC5 THR B 226 GLY B 242 1 17 HELIX 24 AC6 GLY B 243 LEU B 246 5 4 HELIX 25 AC7 ALA B 266 ALA B 270 5 5 HELIX 26 AC8 PRO B 277 ILE B 291 1 15 HELIX 27 AC9 GLU B 293 GLY B 311 1 19 HELIX 28 AD1 GLY B 325 GLN B 339 1 15 SHEET 1 AA110 VAL A 31 THR A 35 0 SHEET 2 AA110 HIS A 2 ILE A 7 1 N HIS A 2 O GLN A 32 SHEET 3 AA110 ILE A 63 LYS A 66 1 O PHE A 65 N THR A 5 SHEET 4 AA110 ALA A 257 ALA A 261 1 O PHE A 259 N CYS A 64 SHEET 5 AA110 ALA A 248 ILE A 252 -1 N GLY A 249 O GLU A 260 SHEET 6 AA110 ALA A 92 ILE A 98 -1 N ALA A 92 O ILE A 252 SHEET 7 AA110 ASN A 111 GLU A 117 -1 O LEU A 112 N ALA A 97 SHEET 8 AA110 VAL A 222 THR A 225 1 O LEU A 223 N VAL A 115 SHEET 9 AA110 LYS A 168 HIS A 173 1 N THR A 170 O VAL A 222 SHEET 10 AA110 GLU A 200 ILE A 205 1 O GLU A 200 N VAL A 169 SHEET 1 AA2 4 GLU A 127 VAL A 132 0 SHEET 2 AA2 4 GLU A 135 THR A 146 -1 O GLU A 140 N HIS A 128 SHEET 3 AA2 4 GLU B 135 THR B 146 -1 O ALA B 143 N SER A 141 SHEET 4 AA2 4 GLY B 121 VAL B 132 -1 N GLY B 121 O VAL B 144 SHEET 1 AA310 VAL B 31 THR B 35 0 SHEET 2 AA310 HIS B 2 ILE B 7 1 N HIS B 2 O GLN B 32 SHEET 3 AA310 ILE B 63 LYS B 66 1 O PHE B 65 N THR B 5 SHEET 4 AA310 ALA B 257 ALA B 261 1 O PHE B 259 N CYS B 64 SHEET 5 AA310 ALA B 248 ILE B 252 -1 N GLY B 249 O GLU B 260 SHEET 6 AA310 ALA B 92 ILE B 98 -1 N ALA B 92 O ILE B 252 SHEET 7 AA310 ASN B 111 GLU B 117 -1 O LEU B 112 N ALA B 97 SHEET 8 AA310 VAL B 222 THR B 225 1 O LEU B 223 N VAL B 115 SHEET 9 AA310 LYS B 168 HIS B 173 1 N THR B 170 O VAL B 222 SHEET 10 AA310 GLU B 200 ILE B 205 1 O GLU B 200 N VAL B 169 SITE 1 AC1 28 LYS A 66 PRO A 68 LEU A 69 THR A 70 SITE 2 AC1 28 THR A 71 ASN A 81 LEU A 244 GLY A 245 SITE 3 AC1 28 GLU A 260 VAL A 262 HIS A 263 GLY A 264 SITE 4 AC1 28 SER A 265 ALA A 266 ASP A 268 ILE A 269 SITE 5 AC1 28 ASN A 276 ACE A 502 CIT A 503 HOH A 620 SITE 6 AC1 28 HOH A 626 HOH A 682 HOH A 684 HOH A 710 SITE 7 AC1 28 ASN B 176 ILE B 205 ALA B 208 HOH B 532 SITE 1 AC2 5 LEU A 244 GLY A 245 NAD A 501 HOH A 602 SITE 2 AC2 5 MET B 211 SITE 1 AC3 13 THR A 71 SER A 79 ASN A 81 ARG A 85 SITE 2 AC3 13 ARG A 95 ARG A 116 TYR A 123 ASP A 231 SITE 3 AC3 13 NAD A 501 HOH A 619 LYS B 174 ASN B 176 SITE 4 AC3 13 ILE B 177 SITE 1 AC4 5 LYS A 168 THR A 170 ASP A 202 ARG A 204 SITE 2 AC4 5 PHE A 220 SITE 1 AC5 5 VAL A 214 HOH A 717 ALA B 106 HOH B 544 SITE 2 AC5 5 HOH B 549 SITE 1 AC6 24 ASN A 176 ILE A 205 HOH A 649 ILE B 12 SITE 2 AC6 24 LYS B 66 PRO B 68 LEU B 69 THR B 70 SITE 3 AC6 24 THR B 71 ASN B 81 GLY B 245 GLU B 260 SITE 4 AC6 24 VAL B 262 HIS B 263 GLY B 264 SER B 265 SITE 5 AC6 24 ALA B 266 ASP B 268 ALA B 275 ASN B 276 SITE 6 AC6 24 CIT B 406 HOH B 525 HOH B 582 HOH B 645 SITE 1 AC7 6 ILE A 177 LEU B 122 GLY B 125 ILE B 126 SITE 2 AC7 6 GLU B 127 ILE B 142 SITE 1 AC8 2 GLY B 102 GLU B 309 SITE 1 AC9 2 ARG B 78 THR B 83 SITE 1 AD1 4 ALA A 124 PHE B 129 ILE B 130 LYS B 131 SITE 1 AD2 13 LYS A 174 ASN A 176 HOH A 690 THR B 71 SITE 2 AD2 13 SER B 79 ASN B 81 ARG B 85 ARG B 95 SITE 3 AD2 13 ARG B 116 TYR B 123 ASP B 231 NAD B 401 SITE 4 AD2 13 HOH B 554 CRYST1 169.168 69.794 71.084 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005911 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014328 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014068 0.00000