HEADER OXIDOREDUCTASE 23-DEC-19 6LLM TITLE BIPHENYL-2,3-DIOL-SOAKED TERMINAL OXYGENASE OF CARBAZOLE 1,9A- TITLE 2 DIOXYGENASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TERMINAL OXYGENASE COMPONENT OF CARBAZOLE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: JANTHINOBACTERIUM SP. (STRAIN J3); SOURCE 3 ORGANISM_TAXID: 213804; SOURCE 4 STRAIN: J3; SOURCE 5 GENE: CARAA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS DIOXYGENASE, LIGAND-BOUND, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.X.WANG,C.SUZUKI-MINAKUCHI,H.NOJIRI REVDAT 2 22-NOV-23 6LLM 1 REMARK REVDAT 1 27-JAN-21 6LLM 0 JRNL AUTH Y.X.WANG,C.SUZUKI-MINAKUCHI,H.NOJIRI JRNL TITL BIPHENYL-2,3-DIOL-SOAKED TERMINAL OXYGENASE OF CARBAZOLE JRNL TITL 2 1,9A-DIOXYGENASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0230 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.33 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.3 REMARK 3 NUMBER OF REFLECTIONS : 50334 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 2751 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3557 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.37 REMARK 3 BIN R VALUE (WORKING SET) : 0.2690 REMARK 3 BIN FREE R VALUE SET COUNT : 205 REMARK 3 BIN FREE R VALUE : 0.3350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3128 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 39 REMARK 3 SOLVENT ATOMS : 403 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.109 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.108 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.067 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.355 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3316 ; 0.014 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 2960 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4510 ; 1.743 ; 1.664 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6947 ; 1.024 ; 1.655 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 405 ; 7.221 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 183 ;32.923 ;23.115 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 561 ;13.859 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;20.503 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 407 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3719 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 633 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6LLM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-DEC-19. REMARK 100 THE DEPOSITION ID IS D_1300015030. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 6.2-6.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NE3A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57678 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.790 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 38.30 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 45.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.26000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1WW9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES PH 6.2-6.3, 15-20% MPD, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 65.46250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.46250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 65.46250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.46250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 65.46250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 65.46250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 65.46250 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 65.46250 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 65.46250 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 65.46250 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 65.46250 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 65.46250 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 65.46250 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 65.46250 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 65.46250 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 65.46250 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 65.46250 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 65.46250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -137.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 -65.46250 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 -65.46250 REMARK 350 BIOMT3 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 -65.46250 REMARK 350 BIOMT2 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 65.46250 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 976 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 390 REMARK 465 HIS A 391 REMARK 465 HIS A 392 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 98 O2 TRS A 504 2.10 REMARK 500 O HOH A 669 O HOH A 810 2.14 REMARK 500 O HOH A 877 O HOH A 956 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 925 O HOH A 968 11455 2.03 REMARK 500 O HOH A 888 O HOH A 954 12455 2.12 REMARK 500 NH2 ARG A 11 O HIS A 387 6445 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 13 -60.65 -4.90 REMARK 500 TRP A 15 41.28 -165.25 REMARK 500 TRP A 15 41.42 -165.48 REMARK 500 ASN A 27 40.21 73.57 REMARK 500 HIS A 71 -79.51 -72.30 REMARK 500 ASN A 110 83.65 -165.18 REMARK 500 ASN A 152 -13.94 84.48 REMARK 500 TYR A 253 43.62 -108.08 REMARK 500 PHE A 275 143.53 -173.77 REMARK 500 ALA A 325 -63.93 -104.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 98 0.12 SIDE CHAIN REMARK 500 ARG A 118 0.10 SIDE CHAIN REMARK 500 ARG A 310 0.07 SIDE CHAIN REMARK 500 ARG A 337 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 502 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 69 SG REMARK 620 2 FES A 502 S1 106.0 REMARK 620 3 FES A 502 S2 108.2 105.6 REMARK 620 4 CYS A 90 SG 109.0 108.2 119.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 502 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 71 ND1 REMARK 620 2 FES A 502 S1 116.7 REMARK 620 3 FES A 502 S2 113.4 105.1 REMARK 620 4 HIS A 93 ND1 91.4 113.9 116.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 183 NE2 REMARK 620 2 HIS A 187 NE2 112.8 REMARK 620 3 ASP A 333 OD1 101.3 96.5 REMARK 620 4 ASP A 333 OD2 150.2 86.6 52.4 REMARK 620 5 HOH A 629 O 98.8 105.2 141.7 97.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE2 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FES A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BPY A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 506 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6LL0 RELATED DB: PDB REMARK 900 RELATED ID: 6LL1 RELATED DB: PDB REMARK 900 RELATED ID: 6LL4 RELATED DB: PDB REMARK 900 RELATED ID: 6LLF RELATED DB: PDB REMARK 900 RELATED ID: 6LLH RELATED DB: PDB REMARK 900 RELATED ID: 6LLK RELATED DB: PDB DBREF 6LLM A 1 384 UNP Q84II6 Q84II6_JANS3 1 384 SEQADV 6LLM LEU A 385 UNP Q84II6 EXPRESSION TAG SEQADV 6LLM GLU A 386 UNP Q84II6 EXPRESSION TAG SEQADV 6LLM HIS A 387 UNP Q84II6 EXPRESSION TAG SEQADV 6LLM HIS A 388 UNP Q84II6 EXPRESSION TAG SEQADV 6LLM HIS A 389 UNP Q84II6 EXPRESSION TAG SEQADV 6LLM HIS A 390 UNP Q84II6 EXPRESSION TAG SEQADV 6LLM HIS A 391 UNP Q84II6 EXPRESSION TAG SEQADV 6LLM HIS A 392 UNP Q84II6 EXPRESSION TAG SEQRES 1 A 392 MET ALA ASN VAL ASP GLU ALA ILE LEU LYS ARG VAL LYS SEQRES 2 A 392 GLY TRP ALA PRO TYR VAL ASP ALA LYS LEU GLY PHE ARG SEQRES 3 A 392 ASN HIS TRP TYR PRO VAL MET PHE SER LYS GLU ILE ASN SEQRES 4 A 392 GLU GLY GLU PRO LYS THR LEU LYS LEU LEU GLY GLU ASN SEQRES 5 A 392 LEU LEU VAL ASN ARG ILE ASP GLY LYS LEU TYR CYS LEU SEQRES 6 A 392 LYS ASP ARG CYS LEU HIS ARG GLY VAL GLN LEU SER VAL SEQRES 7 A 392 LYS VAL GLU CYS LYS THR LYS SER THR ILE THR CYS TRP SEQRES 8 A 392 TYR HIS ALA TRP THR TYR ARG TRP GLU ASP GLY VAL LEU SEQRES 9 A 392 CYS ASP ILE LEU THR ASN PRO THR SER ALA GLN ILE GLY SEQRES 10 A 392 ARG GLN LYS LEU LYS THR TYR PRO VAL GLN GLU ALA LYS SEQRES 11 A 392 GLY CYS VAL PHE ILE TYR LEU GLY ASP GLY ASP PRO PRO SEQRES 12 A 392 PRO LEU ALA ARG ASP THR PRO PRO ASN PHE LEU ASP ASP SEQRES 13 A 392 ASP MET GLU ILE LEU GLY LYS ASN GLN ILE ILE LYS SER SEQRES 14 A 392 ASN TRP ARG LEU ALA VAL GLU ASN GLY PHE ASP PRO SER SEQRES 15 A 392 HIS ILE TYR ILE HIS LYS ASP SER ILE LEU VAL LYS ASP SEQRES 16 A 392 ASN ASP LEU ALA LEU PRO LEU GLY PHE ALA PRO GLY GLY SEQRES 17 A 392 ASP ARG LYS GLN GLN THR ARG VAL VAL ASP ASP ASP VAL SEQRES 18 A 392 VAL GLY ARG LYS GLY VAL TYR ASP LEU ILE GLY GLU HIS SEQRES 19 A 392 GLY VAL PRO VAL PHE GLU GLY THR ILE GLY GLY GLU VAL SEQRES 20 A 392 VAL ARG GLU GLY ALA TYR GLY GLU LYS ILE VAL ALA ASN SEQRES 21 A 392 ASP ILE SER ILE TRP LEU PRO GLY VAL LEU LYS VAL ASN SEQRES 22 A 392 PRO PHE PRO ASN PRO ASP MET MET GLN PHE GLU TRP TYR SEQRES 23 A 392 VAL PRO ILE ASP GLU ASN THR HIS TYR TYR PHE GLN THR SEQRES 24 A 392 LEU GLY LYS PRO CYS ALA ASN ASP GLU GLU ARG LYS LYS SEQRES 25 A 392 TYR GLU GLN GLU PHE GLU SER LYS TRP LYS PRO MET ALA SEQRES 26 A 392 LEU GLU GLY PHE ASN ASN ASP ASP ILE TRP ALA ARG GLU SEQRES 27 A 392 ALA MET VAL ASP PHE TYR ALA ASP ASP LYS GLY TRP VAL SEQRES 28 A 392 ASN GLU ILE LEU PHE GLU SER ASP GLU ALA ILE VAL ALA SEQRES 29 A 392 TRP ARG LYS LEU ALA SER GLU HIS ASN GLN GLY ILE GLN SEQRES 30 A 392 THR GLN ALA HIS VAL SER GLY LEU GLU HIS HIS HIS HIS SEQRES 31 A 392 HIS HIS HET FE2 A 501 1 HET FES A 502 4 HET BPY A 503 14 HET TRS A 504 8 HET DMS A 505 4 HET TRS A 506 8 HETNAM FE2 FE (II) ION HETNAM FES FE2/S2 (INORGANIC) CLUSTER HETNAM BPY BIPHENYL-2,3-DIOL HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM DMS DIMETHYL SULFOXIDE HETSYN TRS TRIS BUFFER FORMUL 2 FE2 FE 2+ FORMUL 3 FES FE2 S2 FORMUL 4 BPY C12 H10 O2 FORMUL 5 TRS 2(C4 H12 N O3 1+) FORMUL 6 DMS C2 H6 O S FORMUL 8 HOH *403(H2 O) HELIX 1 AA1 ASP A 5 ARG A 11 1 7 HELIX 2 AA2 VAL A 12 GLY A 14 5 3 HELIX 3 AA3 TRP A 15 ALA A 21 1 7 HELIX 4 AA4 LYS A 36 ILE A 38 5 3 HELIX 5 AA5 GLN A 75 LYS A 79 5 5 HELIX 6 AA6 PRO A 144 THR A 149 5 6 HELIX 7 AA7 ASN A 170 PHE A 179 1 10 HELIX 8 AA8 ASP A 180 LYS A 188 5 9 HELIX 9 AA9 SER A 190 ASN A 196 1 7 HELIX 10 AB1 ASP A 209 GLN A 212 5 4 HELIX 11 AB2 LEU A 230 GLY A 235 1 6 HELIX 12 AB3 ASN A 306 LYS A 320 1 15 HELIX 13 AB4 LYS A 320 ALA A 325 1 6 HELIX 14 AB5 ASN A 330 MET A 340 1 11 HELIX 15 AB6 MET A 340 ALA A 345 1 6 HELIX 16 AB7 LYS A 348 GLU A 353 1 6 HELIX 17 AB8 PHE A 356 SER A 358 5 3 HELIX 18 AB9 ASP A 359 ASN A 373 1 15 HELIX 19 AC1 THR A 378 GLY A 384 1 7 SHEET 1 AA1 3 HIS A 28 PHE A 34 0 SHEET 2 AA1 3 CYS A 132 LEU A 137 -1 O VAL A 133 N MET A 33 SHEET 3 AA1 3 VAL A 126 ALA A 129 -1 N GLN A 127 O PHE A 134 SHEET 1 AA2 3 LYS A 44 LEU A 48 0 SHEET 2 AA2 3 GLU A 51 ILE A 58 -1 O LEU A 53 N LEU A 46 SHEET 3 AA2 3 LYS A 61 LYS A 66 -1 O LEU A 65 N LEU A 54 SHEET 1 AA3 3 THR A 87 THR A 89 0 SHEET 2 AA3 3 TRP A 95 ARG A 98 -1 O TYR A 97 N ILE A 88 SHEET 3 AA3 3 LEU A 104 ILE A 107 -1 O ASP A 106 N THR A 96 SHEET 1 AA4 7 MET A 158 ILE A 167 0 SHEET 2 AA4 7 THR A 293 PRO A 303 -1 O LEU A 300 N LEU A 161 SHEET 3 AA4 7 MET A 281 ASP A 290 -1 N TRP A 285 O PHE A 297 SHEET 4 AA4 7 VAL A 269 ASN A 273 -1 N VAL A 272 O GLN A 282 SHEET 5 AA4 7 ASP A 261 TRP A 265 -1 N ASP A 261 O ASN A 273 SHEET 6 AA4 7 GLY A 226 ASP A 229 -1 N ASP A 229 O ILE A 262 SHEET 7 AA4 7 THR A 214 VAL A 217 -1 N VAL A 217 O GLY A 226 SHEET 1 AA5 2 ALA A 199 LEU A 200 0 SHEET 2 AA5 2 ALA A 252 TYR A 253 -1 O ALA A 252 N LEU A 200 SHEET 1 AA6 2 GLY A 203 ALA A 205 0 SHEET 2 AA6 2 VAL A 236 VAL A 238 -1 O VAL A 236 N ALA A 205 SHEET 1 AA7 2 GLU A 240 ILE A 243 0 SHEET 2 AA7 2 GLU A 246 GLU A 250 -1 O ARG A 249 N GLY A 241 LINK SG CYS A 69 FE1 FES A 502 1555 1555 2.34 LINK ND1 HIS A 71 FE2 FES A 502 1555 1555 2.04 LINK SG CYS A 90 FE1 FES A 502 1555 1555 2.28 LINK ND1 HIS A 93 FE2 FES A 502 1555 1555 2.05 LINK NE2 HIS A 183 FE FE2 A 501 1555 1555 2.13 LINK NE2 HIS A 187 FE FE2 A 501 1555 1555 2.11 LINK OD1 ASP A 333 FE FE2 A 501 1555 1555 2.02 LINK OD2 ASP A 333 FE FE2 A 501 1555 1555 2.69 LINK FE FE2 A 501 O HOH A 629 1555 1555 1.82 CISPEP 1 LEU A 266 PRO A 267 0 6.51 CISPEP 2 ASN A 273 PRO A 274 0 -7.61 CISPEP 3 PHE A 275 PRO A 276 0 -3.61 SITE 1 AC1 4 HIS A 183 HIS A 187 ASP A 333 HOH A 629 SITE 1 AC2 6 CYS A 69 HIS A 71 ARG A 72 CYS A 90 SITE 2 AC2 6 HIS A 93 TRP A 95 SITE 1 AC3 12 GLY A 178 HIS A 183 ILE A 184 ILE A 262 SITE 2 AC3 12 LEU A 270 PHE A 275 GLN A 282 GLU A 284 SITE 3 AC3 12 PHE A 329 ASN A 330 HOH A 629 HOH A 660 SITE 1 AC4 8 ILE A 58 TYR A 63 LYS A 85 SER A 86 SITE 2 AC4 8 ARG A 98 GLU A 100 HOH A 703 HOH A 774 SITE 1 AC5 2 PRO A 43 SER A 77 SITE 1 AC6 6 PRO A 111 THR A 112 ALA A 114 GLN A 115 SITE 2 AC6 6 HOH A 773 HOH A 894 CRYST1 130.925 130.925 130.925 90.00 90.00 90.00 P 21 3 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007638 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007638 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007638 0.00000