HEADER MEMBRANE PROTEIN 24-DEC-19 6LM0 TITLE THE CRYSTAL STRUCTURE OF CYANORHODOPSIN (CYR) N2098R FROM TITLE 2 CYANOBACTERIA CALOTHRIX SP. NIES-2098 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RHODOPSIN; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CALOTHRIX SP. NIES-2098; SOURCE 3 ORGANISM_TAXID: 1954171; SOURCE 4 GENE: NIES2098_21630; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RETINAL CELL-FREE SYNTHESIS BACTERIAL TYPE RHODOPSIN CYANOBACTERIA, KEYWDS 2 MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.HOSAKA,T.KIMURA-SOMEYA,M.SHIROUZU REVDAT 2 22-NOV-23 6LM0 1 REMARK REVDAT 1 21-OCT-20 6LM0 0 JRNL AUTH M.HASEGAWA,T.HOSAKA,K.KOJIMA,Y.NISHIMURA,Y.NAKAJIMA, JRNL AUTH 2 T.KIMURA-SOMEYA,M.SHIROUZU,Y.SUDO,S.YOSHIZAWA JRNL TITL A UNIQUE CLADE OF LIGHT-DRIVEN PROTON-PUMPING RHODOPSINS JRNL TITL 2 EVOLVED IN THE CYANOBACTERIAL LINEAGE. JRNL REF SCI REP V. 10 16752 2020 JRNL REFN ESSN 2045-2322 JRNL PMID 33028840 JRNL DOI 10.1038/S41598-020-73606-Y REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.62 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 23155 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.590 REMARK 3 FREE R VALUE TEST SET COUNT : 1988 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.6150 - 6.3829 0.99 1614 148 0.2206 0.2717 REMARK 3 2 6.3829 - 5.0679 1.00 1553 149 0.2541 0.2698 REMARK 3 3 5.0679 - 4.4277 1.00 1530 135 0.2252 0.2484 REMARK 3 4 4.4277 - 4.0231 1.00 1504 146 0.2109 0.2546 REMARK 3 5 4.0231 - 3.7349 1.00 1521 139 0.2258 0.2703 REMARK 3 6 3.7349 - 3.5147 1.00 1503 142 0.2130 0.2762 REMARK 3 7 3.5147 - 3.3387 1.00 1498 144 0.2353 0.3023 REMARK 3 8 3.3387 - 3.1934 1.00 1500 148 0.2349 0.2664 REMARK 3 9 3.1934 - 3.0705 1.00 1485 139 0.2288 0.3038 REMARK 3 10 3.0705 - 2.9646 1.00 1500 135 0.2189 0.2977 REMARK 3 11 2.9646 - 2.8719 1.00 1495 143 0.2221 0.2702 REMARK 3 12 2.8719 - 2.7898 1.00 1487 143 0.2292 0.2910 REMARK 3 13 2.7898 - 2.7164 1.00 1466 137 0.2397 0.2933 REMARK 3 14 2.7164 - 2.6501 1.00 1511 140 0.2634 0.3232 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.630 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.07 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6LM0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-DEC-19. REMARK 100 THE DEPOSITION ID IS D_1300014676. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-FEB-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23218 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 49.615 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 72.41 REMARK 200 R MERGE (I) : 0.72700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.7600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 75.04 REMARK 200 R MERGE FOR SHELL (I) : 6.40400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1C3W REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM ACETATE (PH5.0), 200MM REMARK 280 SODIUMU CHLORIDE, 39% PEG 500, LIPIDIC CUBIC PHASE, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 112.25000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 112.25000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 32.24500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.78500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 32.24500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.78500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 112.25000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 32.24500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 53.78500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 112.25000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 32.24500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 53.78500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -6 REMARK 465 SER A -5 REMARK 465 SER A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 GLU A 239 REMARK 465 GLU A 240 REMARK 465 ARG A 241 REMARK 465 GLU A 242 REMARK 465 GLN A 243 REMARK 465 SER A 244 REMARK 465 PRO A 245 REMARK 465 TYR A 246 REMARK 465 ARG A 247 REMARK 465 GLY B -6 REMARK 465 SER B -5 REMARK 465 SER B -4 REMARK 465 GLY B -3 REMARK 465 SER B 225 REMARK 465 ASP B 226 REMARK 465 ARG B 227 REMARK 465 ILE B 228 REMARK 465 MET B 229 REMARK 465 GLU B 230 REMARK 465 THR B 231 REMARK 465 VAL B 232 REMARK 465 HIS B 233 REMARK 465 SER B 234 REMARK 465 TYR B 235 REMARK 465 MET B 236 REMARK 465 GLN B 237 REMARK 465 SER B 238 REMARK 465 GLU B 239 REMARK 465 GLU B 240 REMARK 465 ARG B 241 REMARK 465 GLU B 242 REMARK 465 GLN B 243 REMARK 465 SER B 244 REMARK 465 PRO B 245 REMARK 465 TYR B 246 REMARK 465 ARG B 247 REMARK 465 GLY C -6 REMARK 465 SER C -5 REMARK 465 SER C -4 REMARK 465 GLY C -3 REMARK 465 SER C -2 REMARK 465 ARG C 241 REMARK 465 GLU C 242 REMARK 465 GLN C 243 REMARK 465 SER C 244 REMARK 465 PRO C 245 REMARK 465 TYR C 246 REMARK 465 ARG C 247 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O TRP B 75 OG1 THR B 79 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 62 -69.85 -103.66 REMARK 500 THR A 142 -82.17 -112.98 REMARK 500 LYS A 204 -57.66 -120.65 REMARK 500 GLN A 237 34.32 -88.17 REMARK 500 SER B -1 -179.63 -69.79 REMARK 500 THR B 142 -85.82 -110.56 REMARK 500 LYS B 204 -56.08 -121.12 REMARK 500 ARG C 28 -71.44 -60.37 REMARK 500 ILE C 62 -72.33 -88.12 REMARK 500 THR C 142 -94.07 -109.89 REMARK 500 LYS C 204 -50.62 -124.99 REMARK 500 SER C 238 47.54 -107.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue RET A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEX A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEX A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OCT A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OCT A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OCT A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C14 A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEX B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue D10 B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C14 B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C14 B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OCT C 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue D10 C 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C14 C 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide RET B 301 and LYS B REMARK 800 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide RET C 301 and LYS C REMARK 800 204 DBREF1 6LM0 A 1 247 UNP A0A1Z4FUT4_9CYAN DBREF2 6LM0 A A0A1Z4FUT4 1 247 DBREF1 6LM0 B 1 247 UNP A0A1Z4FUT4_9CYAN DBREF2 6LM0 B A0A1Z4FUT4 1 247 DBREF1 6LM0 C 1 247 UNP A0A1Z4FUT4_9CYAN DBREF2 6LM0 C A0A1Z4FUT4 1 247 SEQADV 6LM0 GLY A -6 UNP A0A1Z4FUT EXPRESSION TAG SEQADV 6LM0 SER A -5 UNP A0A1Z4FUT EXPRESSION TAG SEQADV 6LM0 SER A -4 UNP A0A1Z4FUT EXPRESSION TAG SEQADV 6LM0 GLY A -3 UNP A0A1Z4FUT EXPRESSION TAG SEQADV 6LM0 SER A -2 UNP A0A1Z4FUT EXPRESSION TAG SEQADV 6LM0 SER A -1 UNP A0A1Z4FUT EXPRESSION TAG SEQADV 6LM0 GLY A 0 UNP A0A1Z4FUT EXPRESSION TAG SEQADV 6LM0 GLY B -6 UNP A0A1Z4FUT EXPRESSION TAG SEQADV 6LM0 SER B -5 UNP A0A1Z4FUT EXPRESSION TAG SEQADV 6LM0 SER B -4 UNP A0A1Z4FUT EXPRESSION TAG SEQADV 6LM0 GLY B -3 UNP A0A1Z4FUT EXPRESSION TAG SEQADV 6LM0 SER B -2 UNP A0A1Z4FUT EXPRESSION TAG SEQADV 6LM0 SER B -1 UNP A0A1Z4FUT EXPRESSION TAG SEQADV 6LM0 GLY B 0 UNP A0A1Z4FUT EXPRESSION TAG SEQADV 6LM0 GLY C -6 UNP A0A1Z4FUT EXPRESSION TAG SEQADV 6LM0 SER C -5 UNP A0A1Z4FUT EXPRESSION TAG SEQADV 6LM0 SER C -4 UNP A0A1Z4FUT EXPRESSION TAG SEQADV 6LM0 GLY C -3 UNP A0A1Z4FUT EXPRESSION TAG SEQADV 6LM0 SER C -2 UNP A0A1Z4FUT EXPRESSION TAG SEQADV 6LM0 SER C -1 UNP A0A1Z4FUT EXPRESSION TAG SEQADV 6LM0 GLY C 0 UNP A0A1Z4FUT EXPRESSION TAG SEQRES 1 A 254 GLY SER SER GLY SER SER GLY MET THR GLN PHE TRP LEU SEQRES 2 A 254 TRP VAL GLY PHE ILE GLY MET VAL ILE GLY CYS ILE TYR SEQRES 3 A 254 PHE GLY MET LYS ALA SER ALA MET ARG ARG ARG GLU GLY SEQRES 4 A 254 MET GLU PHE PRO LEU GLU SER PHE PHE ILE THR LEU TRP SEQRES 5 A 254 ALA ALA ALA LEU TYR LEU THR MET ILE LEU GLY GLU THR SEQRES 6 A 254 VAL THR PRO ILE ASN GLY GLN THR VAL PHE TRP GLY ARG SEQRES 7 A 254 TYR ILE ASP TRP VAL VAL THR THR PRO LEU LEU LEU MET SEQRES 8 A 254 GLU LEU GLY VAL ILE ALA GLY LEU ARG PRO LYS LEU ILE SEQRES 9 A 254 ALA GLY VAL MET GLY ALA ASP ILE PHE MET ILE VAL THR SEQRES 10 A 254 GLY PHE ILE GLY ALA VAL GLU ALA PRO PRO TYR ASN TYR SEQRES 11 A 254 LEU TRP TRP LEU ILE SER THR GLY SER PHE LEU ALA ILE SEQRES 12 A 254 LEU GLY SER LEU LEU THR GLU TYR SER ALA SER ALA LYS SEQRES 13 A 254 ARG ARG ASN GLY ARG ILE ASN SER LEU PHE GLN THR LEU SEQRES 14 A 254 ARG ASN ILE LEU ILE VAL LEU TRP ILE CYS TYR PRO ILE SEQRES 15 A 254 VAL TRP ILE LEU GLY ALA GLU GLY PHE HIS VAL ILE SER SEQRES 16 A 254 VAL GLY TRP GLU THR LEU CYS TYR SER VAL LEU ASP VAL SEQRES 17 A 254 CYS ALA LYS VAL GLY PHE GLY PHE VAL VAL VAL SER ALA SEQRES 18 A 254 GLY ASN GLU THR LEU ALA GLN ALA SER ASN SER ASP ARG SEQRES 19 A 254 ILE MET GLU THR VAL HIS SER TYR MET GLN SER GLU GLU SEQRES 20 A 254 ARG GLU GLN SER PRO TYR ARG SEQRES 1 B 254 GLY SER SER GLY SER SER GLY MET THR GLN PHE TRP LEU SEQRES 2 B 254 TRP VAL GLY PHE ILE GLY MET VAL ILE GLY CYS ILE TYR SEQRES 3 B 254 PHE GLY MET LYS ALA SER ALA MET ARG ARG ARG GLU GLY SEQRES 4 B 254 MET GLU PHE PRO LEU GLU SER PHE PHE ILE THR LEU TRP SEQRES 5 B 254 ALA ALA ALA LEU TYR LEU THR MET ILE LEU GLY GLU THR SEQRES 6 B 254 VAL THR PRO ILE ASN GLY GLN THR VAL PHE TRP GLY ARG SEQRES 7 B 254 TYR ILE ASP TRP VAL VAL THR THR PRO LEU LEU LEU MET SEQRES 8 B 254 GLU LEU GLY VAL ILE ALA GLY LEU ARG PRO LYS LEU ILE SEQRES 9 B 254 ALA GLY VAL MET GLY ALA ASP ILE PHE MET ILE VAL THR SEQRES 10 B 254 GLY PHE ILE GLY ALA VAL GLU ALA PRO PRO TYR ASN TYR SEQRES 11 B 254 LEU TRP TRP LEU ILE SER THR GLY SER PHE LEU ALA ILE SEQRES 12 B 254 LEU GLY SER LEU LEU THR GLU TYR SER ALA SER ALA LYS SEQRES 13 B 254 ARG ARG ASN GLY ARG ILE ASN SER LEU PHE GLN THR LEU SEQRES 14 B 254 ARG ASN ILE LEU ILE VAL LEU TRP ILE CYS TYR PRO ILE SEQRES 15 B 254 VAL TRP ILE LEU GLY ALA GLU GLY PHE HIS VAL ILE SER SEQRES 16 B 254 VAL GLY TRP GLU THR LEU CYS TYR SER VAL LEU ASP VAL SEQRES 17 B 254 CYS ALA LYS VAL GLY PHE GLY PHE VAL VAL VAL SER ALA SEQRES 18 B 254 GLY ASN GLU THR LEU ALA GLN ALA SER ASN SER ASP ARG SEQRES 19 B 254 ILE MET GLU THR VAL HIS SER TYR MET GLN SER GLU GLU SEQRES 20 B 254 ARG GLU GLN SER PRO TYR ARG SEQRES 1 C 254 GLY SER SER GLY SER SER GLY MET THR GLN PHE TRP LEU SEQRES 2 C 254 TRP VAL GLY PHE ILE GLY MET VAL ILE GLY CYS ILE TYR SEQRES 3 C 254 PHE GLY MET LYS ALA SER ALA MET ARG ARG ARG GLU GLY SEQRES 4 C 254 MET GLU PHE PRO LEU GLU SER PHE PHE ILE THR LEU TRP SEQRES 5 C 254 ALA ALA ALA LEU TYR LEU THR MET ILE LEU GLY GLU THR SEQRES 6 C 254 VAL THR PRO ILE ASN GLY GLN THR VAL PHE TRP GLY ARG SEQRES 7 C 254 TYR ILE ASP TRP VAL VAL THR THR PRO LEU LEU LEU MET SEQRES 8 C 254 GLU LEU GLY VAL ILE ALA GLY LEU ARG PRO LYS LEU ILE SEQRES 9 C 254 ALA GLY VAL MET GLY ALA ASP ILE PHE MET ILE VAL THR SEQRES 10 C 254 GLY PHE ILE GLY ALA VAL GLU ALA PRO PRO TYR ASN TYR SEQRES 11 C 254 LEU TRP TRP LEU ILE SER THR GLY SER PHE LEU ALA ILE SEQRES 12 C 254 LEU GLY SER LEU LEU THR GLU TYR SER ALA SER ALA LYS SEQRES 13 C 254 ARG ARG ASN GLY ARG ILE ASN SER LEU PHE GLN THR LEU SEQRES 14 C 254 ARG ASN ILE LEU ILE VAL LEU TRP ILE CYS TYR PRO ILE SEQRES 15 C 254 VAL TRP ILE LEU GLY ALA GLU GLY PHE HIS VAL ILE SER SEQRES 16 C 254 VAL GLY TRP GLU THR LEU CYS TYR SER VAL LEU ASP VAL SEQRES 17 C 254 CYS ALA LYS VAL GLY PHE GLY PHE VAL VAL VAL SER ALA SEQRES 18 C 254 GLY ASN GLU THR LEU ALA GLN ALA SER ASN SER ASP ARG SEQRES 19 C 254 ILE MET GLU THR VAL HIS SER TYR MET GLN SER GLU GLU SEQRES 20 C 254 ARG GLU GLN SER PRO TYR ARG HET RET A 301 20 HET HEX A 302 6 HET HEX A 303 6 HET OCT A 304 8 HET OCT A 305 8 HET OCT A 306 8 HET C14 A 307 14 HET RET B 301 20 HET HEX B 302 6 HET D10 B 303 10 HET C14 B 304 14 HET C14 B 305 14 HET RET C 301 20 HET OCT C 302 8 HET D10 C 303 10 HET C14 C 304 14 HETNAM RET RETINAL HETNAM HEX HEXANE HETNAM OCT N-OCTANE HETNAM C14 TETRADECANE HETNAM D10 DECANE FORMUL 4 RET 3(C20 H28 O) FORMUL 5 HEX 3(C6 H14) FORMUL 7 OCT 4(C8 H18) FORMUL 10 C14 4(C14 H30) FORMUL 13 D10 2(C10 H22) FORMUL 20 HOH *59(H2 O) HELIX 1 AA1 SER A -1 MET A 27 1 29 HELIX 2 AA2 MET A 33 LEU A 55 1 23 HELIX 3 AA3 TRP A 69 GLY A 91 1 23 HELIX 4 AA4 ARG A 93 VAL A 116 1 24 HELIX 5 AA5 PRO A 120 THR A 142 1 23 HELIX 6 AA6 THR A 142 LYS A 149 1 8 HELIX 7 AA7 ASN A 152 ILE A 171 1 20 HELIX 8 AA8 ILE A 171 GLY A 180 1 10 HELIX 9 AA9 SER A 188 SER A 213 1 26 HELIX 10 AB1 GLY A 215 ASN A 224 1 10 HELIX 11 AB2 ASN A 224 GLN A 237 1 14 HELIX 12 AB3 SER B -1 MET B 27 1 29 HELIX 13 AB4 MET B 33 LEU B 55 1 23 HELIX 14 AB5 TRP B 69 ALA B 90 1 22 HELIX 15 AB6 ARG B 93 VAL B 116 1 24 HELIX 16 AB7 ALA B 118 THR B 142 1 25 HELIX 17 AB8 THR B 142 LYS B 149 1 8 HELIX 18 AB9 ASN B 152 GLY B 180 1 29 HELIX 19 AC1 SER B 188 SER B 213 1 26 HELIX 20 AC2 GLY B 215 ASN B 224 1 10 HELIX 21 AC3 GLY C 0 ALA C 26 1 27 HELIX 22 AC4 MET C 33 LEU C 55 1 23 HELIX 23 AC5 TRP C 69 ALA C 90 1 22 HELIX 24 AC6 ARG C 93 VAL C 116 1 24 HELIX 25 AC7 ALA C 118 THR C 142 1 25 HELIX 26 AC8 THR C 142 ARG C 150 1 9 HELIX 27 AC9 ASN C 152 GLY C 180 1 29 HELIX 28 AD1 SER C 188 SER C 213 1 26 HELIX 29 AD2 GLY C 215 SER C 223 1 9 HELIX 30 AD3 ASN C 224 SER C 238 1 15 SHEET 1 AA1 2 THR A 60 PRO A 61 0 SHEET 2 AA1 2 THR A 66 VAL A 67 -1 O VAL A 67 N THR A 60 SHEET 1 AA2 2 THR B 60 PRO B 61 0 SHEET 2 AA2 2 THR B 66 VAL B 67 -1 O VAL B 67 N THR B 60 SHEET 1 AA3 2 THR C 60 PRO C 61 0 SHEET 2 AA3 2 THR C 66 VAL C 67 -1 O VAL C 67 N THR C 60 LINK NZ LYS A 204 C15 RET A 301 1555 1555 1.35 LINK NZ LYS B 204 C15 RET B 301 1555 1555 1.35 LINK NZ LYS C 204 C15 RET C 301 1555 1555 1.35 SITE 1 AC1 12 TRP A 75 THR A 79 TRP A 126 SER A 129 SITE 2 AC1 12 THR A 130 PHE A 133 TRP A 170 TYR A 173 SITE 3 AC1 12 PRO A 174 TRP A 177 ASP A 200 LYS A 204 SITE 1 AC2 1 GLU A 38 SITE 1 AC3 1 GLU A 57 SITE 1 AC4 2 PHE C 106 ILE C 128 SITE 1 AC5 2 TRP A 191 OCT A 306 SITE 1 AC6 3 ASN A 164 VAL A 186 OCT A 305 SITE 1 AC7 7 GLY A 99 ALA A 103 GLY A 131 SER A 132 SITE 2 AC7 7 SER A 139 PHE B 40 PHE B 41 SITE 1 AC8 1 CYS B 17 SITE 1 AC9 2 VAL A 116 GLU B 57 SITE 1 AD1 2 TRP B 7 ILE B 11 SITE 1 AD2 5 ALA B 103 SER B 132 SER B 139 PHE C 40 SITE 2 AD2 5 LEU C 44 SITE 1 AD3 5 LYS B 95 GLU C 34 LEU C 37 GLU C 38 SITE 2 AD3 5 PHE C 41 SITE 1 AD4 3 ILE B 113 GLY C 56 GLU C 57 SITE 1 AD5 4 PHE A 40 PHE A 41 ALA C 103 ALA C 135 SITE 1 AD6 20 ILE B 42 ALA B 46 THR B 79 MET B 107 SITE 2 AD6 20 TRP B 126 SER B 129 THR B 130 PHE B 133 SITE 3 AD6 20 TRP B 170 TYR B 173 PRO B 174 TRP B 177 SITE 4 AD6 20 ASP B 200 VAL B 201 CYS B 202 ALA B 203 SITE 5 AD6 20 VAL B 205 GLY B 206 GLY B 208 HOH B 408 SITE 1 AD7 20 ILE C 42 TRP C 75 THR C 78 THR C 79 SITE 2 AD7 20 MET C 107 TRP C 126 THR C 130 PHE C 133 SITE 3 AD7 20 TRP C 170 TYR C 173 PRO C 174 TRP C 177 SITE 4 AD7 20 ASP C 200 VAL C 201 CYS C 202 ALA C 203 SITE 5 AD7 20 VAL C 205 GLY C 206 GLY C 208 HOH C 410 CRYST1 64.490 107.570 224.500 90.00 90.00 90.00 C 2 2 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015506 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009296 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004454 0.00000