HEADER VIRUS 24-DEC-19 6LM3 TITLE NEUTRALIZATION MECHANISM OF A MONOCLONAL ANTIBODY TARGETING A PORCINE TITLE 2 CIRCOVIRUS TYPE 2 CAP PROTEIN CONFORMATIONAL EPITOPE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PORCINE CIRCOVIRUS 2; SOURCE 3 ORGANISM_COMMON: PCV2; SOURCE 4 ORGANISM_TAXID: 85708; SOURCE 5 EXPRESSION_SYSTEM: PORCINE CIRCOVIRUS 2; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 85708 KEYWDS PORCINE CIRCOVIRUS TYPE 2, CAP PROTEIN, VIRUS EXPDTA ELECTRON MICROSCOPY AUTHOR Z.SUN,L.HUANG,D.XIA,Y.WEI,E.SUN,H.ZHU,H.BIAN,H.WU,L.FENG,J.WANG,C.LIU REVDAT 4 27-MAR-24 6LM3 1 REMARK REVDAT 3 29-APR-20 6LM3 1 JRNL REVDAT 2 04-MAR-20 6LM3 1 JRNL REVDAT 1 12-FEB-20 6LM3 0 JRNL AUTH L.HUANG,Z.SUN,D.XIA,Y.WEI,E.SUN,C.LIU,H.ZHU,H.BIAN,H.WU, JRNL AUTH 2 L.FENG,J.WANG,C.LIU JRNL TITL NEUTRALIZATION MECHANISM OF A MONOCLONAL ANTIBODY TARGETING JRNL TITL 2 A PORCINE CIRCOVIRUS TYPE 2 CAP PROTEIN CONFORMATIONAL JRNL TITL 3 EPITOPE. JRNL REF J.VIROL. V. 94 2020 JRNL REFN ESSN 1098-5514 JRNL PMID 32075932 JRNL DOI 10.1128/JVI.01836-19 REMARK 2 REMARK 2 RESOLUTION. 6.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 6.700 REMARK 3 NUMBER OF PARTICLES : 2011 REMARK 3 CTF CORRECTION METHOD : NONE REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 6LM3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-DEC-19. REMARK 100 THE DEPOSITION ID IS D_1300014266. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : PCV2 VIRION IN COMPLEX WITH FAB REMARK 245 FRAGMENTS OF THE MAB 3A5 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TALOS ARCTICA REMARK 245 DETECTOR TYPE : FEI CETA (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 3500.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT2 2 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 2 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT1 3 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT2 3 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 3 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT1 4 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT2 4 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT3 4 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT1 5 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT2 5 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT3 5 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT1 6 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT2 6 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT3 6 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 7 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT2 7 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT3 7 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 8 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 8 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT3 8 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT1 9 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT2 9 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT3 9 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT1 10 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 10 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 10 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 11 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 11 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 11 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT1 12 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 12 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 12 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT1 13 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 13 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 13 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 14 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 14 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 14 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 15 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 15 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 15 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 16 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 16 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT3 16 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 17 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 17 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 17 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 18 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 18 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 18 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 19 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 19 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 19 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 20 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 20 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT3 20 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 21 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT2 21 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT3 21 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT1 22 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT2 22 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT3 22 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT1 23 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 23 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 23 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 24 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 24 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT3 24 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT1 25 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 25 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT3 25 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT1 26 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 26 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT3 26 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 27 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 27 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 27 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 28 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 28 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT3 28 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT1 29 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 29 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT3 29 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT1 30 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 30 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT3 30 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 31 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 31 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 31 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 32 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT2 32 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 32 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT1 33 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT2 33 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 33 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT1 34 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 34 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 34 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 35 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT2 35 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 35 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 36 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 36 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 36 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 37 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 37 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 37 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 38 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT2 38 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 38 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 39 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT2 39 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 39 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 40 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 40 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 40 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 41 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 41 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT3 41 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT1 42 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 42 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT3 42 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT1 43 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 43 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 43 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT1 44 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 44 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 44 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT1 45 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 45 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 45 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 46 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 46 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 46 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 47 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 47 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 47 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT1 48 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT2 48 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 48 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT1 49 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 49 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 49 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT1 50 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 50 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 50 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT1 51 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 51 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT3 51 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 52 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 52 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 52 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 53 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 53 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT3 53 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 54 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT2 54 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT3 54 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 55 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 55 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT3 55 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 56 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT2 56 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 56 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 57 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT2 57 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 57 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 58 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 58 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 58 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 59 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT2 59 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT3 59 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 60 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT2 60 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT3 60 -0.809017 -0.309017 -0.500000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 TYR A 3 REMARK 465 PRO A 4 REMARK 465 ARG A 5 REMARK 465 ARG A 6 REMARK 465 ARG A 7 REMARK 465 PHE A 8 REMARK 465 ARG A 9 REMARK 465 ARG A 10 REMARK 465 ARG A 11 REMARK 465 ARG A 12 REMARK 465 HIS A 13 REMARK 465 ARG A 14 REMARK 465 PRO A 15 REMARK 465 ARG A 16 REMARK 465 SER A 17 REMARK 465 HIS A 18 REMARK 465 LEU A 19 REMARK 465 GLY A 20 REMARK 465 LEU A 21 REMARK 465 ILE A 22 REMARK 465 LEU A 23 REMARK 465 ARG A 24 REMARK 465 ARG A 25 REMARK 465 ARG A 26 REMARK 465 PRO A 27 REMARK 465 TRP A 28 REMARK 465 LEU A 29 REMARK 465 VAL A 30 REMARK 465 HIS A 31 REMARK 465 PRO A 32 REMARK 465 ARG A 33 REMARK 465 HIS A 34 REMARK 465 ARG A 35 REMARK 465 TYR A 36 REMARK 465 ARG A 37 REMARK 465 TRP A 38 REMARK 465 ARG A 39 REMARK 465 ARG A 40 REMARK 465 LYS A 41 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 125 34.61 -141.08 REMARK 500 ILE A 171 -64.97 -96.91 REMARK 500 GLU A 223 75.62 61.96 REMARK 500 PHE A 224 106.69 -59.36 REMARK 500 ASN A 225 52.57 -140.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 115 ARG A 116 -146.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-0916 RELATED DB: EMDB REMARK 900 NEUTRALIZATION MECHANISM OF A MONOCLONAL ANTIBODY TARGETING A REMARK 900 PORCINE CIRCOVIRUS TYPE 2 CAP PROTEIN CONFORMATIONAL EPITOPE DBREF 6LM3 A 1 231 UNP F5A4Z4 F5A4Z4_PCV2 1 231 SEQRES 1 A 231 MET THR TYR PRO ARG ARG ARG PHE ARG ARG ARG ARG HIS SEQRES 2 A 231 ARG PRO ARG SER HIS LEU GLY LEU ILE LEU ARG ARG ARG SEQRES 3 A 231 PRO TRP LEU VAL HIS PRO ARG HIS ARG TYR ARG TRP ARG SEQRES 4 A 231 ARG LYS ASN GLY ILE PHE ASN THR ARG LEU SER CYS THR SEQRES 5 A 231 PHE GLY TYR THR VAL LYS ALA THR THR VAL ARG THR PRO SEQRES 6 A 231 SER TRP ALA VAL ASP MET MET ARG PHE ASN ILE ASN ASP SEQRES 7 A 231 PHE VAL PRO PRO GLY GLY GLY THR ASN LYS ILE SER ILE SEQRES 8 A 231 PRO PHE GLU TYR TYR ARG ILE ARG LYS VAL LYS VAL GLU SEQRES 9 A 231 PHE TRP PRO CYS SER PRO ILE THR GLN GLY ASP ARG GLY SEQRES 10 A 231 VAL GLY SER THR ALA VAL ILE LEU ASP ASP ASN PHE VAL SEQRES 11 A 231 THR LYS ALA THR ALA LEU THR TYR ASP PRO TYR VAL ASN SEQRES 12 A 231 TYR SER SER ARG HIS THR ILE PRO GLN PRO PHE SER TYR SEQRES 13 A 231 HIS SER ARG TYR PHE THR PRO LYS PRO VAL LEU ASP SER SEQRES 14 A 231 THR ILE ASP TYR PHE GLN PRO ASN ASN LYS ARG ASN GLN SEQRES 15 A 231 LEU TRP LEU ARG LEU GLN THR SER ALA ASN VAL ASP HIS SEQRES 16 A 231 VAL GLY LEU GLY ILE ALA PHE GLU ASN SER THR TYR ASP SEQRES 17 A 231 GLN ASP TYR ASN ILE ARG VAL THR MET TYR VAL GLN PHE SEQRES 18 A 231 ARG GLU PHE ASN LEU LYS ASP PRO PRO LEU HELIX 1 AA1 ASN A 75 PHE A 79 5 5 HELIX 2 AA2 ASP A 139 TYR A 144 5 6 SHEET 1 AA1 4 ASN A 46 CYS A 51 0 SHEET 2 AA1 4 TYR A 211 GLN A 220 -1 O MET A 217 N LEU A 49 SHEET 3 AA1 4 TYR A 95 PRO A 107 -1 N ARG A 99 O TYR A 218 SHEET 4 AA1 4 TYR A 160 PHE A 161 -1 O PHE A 161 N VAL A 101 SHEET 1 AA2 4 ASN A 46 CYS A 51 0 SHEET 2 AA2 4 TYR A 211 GLN A 220 -1 O MET A 217 N LEU A 49 SHEET 3 AA2 4 TYR A 95 PRO A 107 -1 N ARG A 99 O TYR A 218 SHEET 4 AA2 4 LEU A 185 ARG A 186 -1 O LEU A 185 N TYR A 96 SHEET 1 AA3 4 TRP A 67 ALA A 68 0 SHEET 2 AA3 4 ALA A 201 GLU A 203 -1 O PHE A 202 N ALA A 68 SHEET 3 AA3 4 VAL A 118 SER A 120 -1 N SER A 120 O ALA A 201 SHEET 4 AA3 4 ILE A 150 PRO A 151 -1 O ILE A 150 N GLY A 119 CISPEP 1 GLN A 152 PRO A 153 0 -2.93 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000