HEADER PLANT PROTEIN 12-JAN-20 6LPV TITLE STRUCTURE OF SPERMIDINE HYDROXYCINNAMOYL TRANSFERASES FROM ARABIDOPSIS TITLE 2 THALIANA COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPERMIDINE HYDROXYCINNAMOYL TRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BAHD-LIKE HYDROXYCINNAMOYL TRANSFERASE; COMPND 5 EC: 2.3.1.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: SHT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KEY WORDS: BAHD TRANSFERASE, PHENOLAMIDES, SPERMIDINE, PUTRESCINE, KEYWDS 2 MULTISITE-ACYLATION, MOLECULAR MECHANISM, SEQUENCE SIMILARITY KEYWDS 3 NETWORK, PLANT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.Y.WANG,P.ZHANG REVDAT 3 29-NOV-23 6LPV 1 REMARK REVDAT 2 17-FEB-21 6LPV 1 JRNL REVDAT 1 13-JAN-21 6LPV 0 JRNL AUTH C.WANG,J.LI,M.MA,Z.LIN,W.HU,W.LIN,P.ZHANG JRNL TITL STRUCTURAL AND BIOCHEMICAL INSIGHTS INTO TWO BAHD JRNL TITL 2 ACYLTRANSFERASES ( AT SHT AND AT SDT) INVOLVED IN JRNL TITL 3 PHENOLAMIDE BIOSYNTHESIS. JRNL REF FRONT PLANT SCI V. 11 10118 2020 JRNL REFN ESSN 1664-462X JRNL PMID 33519864 JRNL DOI 10.3389/FPLS.2020.610118 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.14 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 22638 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 1159 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 5.0000 - 4.5923 0.99 2874 133 0.1977 0.2316 REMARK 3 2 4.5923 - 3.6454 1.00 2711 150 0.1713 0.1968 REMARK 3 3 3.6454 - 3.1847 1.00 2684 152 0.1993 0.2812 REMARK 3 4 3.1847 - 2.8935 1.00 2674 162 0.2168 0.2732 REMARK 3 5 2.8935 - 2.6862 1.00 2683 145 0.2169 0.2606 REMARK 3 6 2.6862 - 2.5278 1.00 2629 146 0.2272 0.3060 REMARK 3 7 2.5278 - 2.4012 1.00 2651 133 0.2338 0.3278 REMARK 3 8 2.4000 - 2.2900 0.97 2573 138 0.2455 0.3264 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.810 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6LPV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1300015256. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JAN-13 REMARK 200 TEMPERATURE (KELVIN) : 81 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NONIUS KAPPA CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22640 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.290 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.9400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.29 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.37 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4G0B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM SULFATE, 0.1M TRIS-HCL REMARK 280 (PH 8.5), 25% W/V PEG 3350 AT 20, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.68200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.62400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.21650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.62400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.68200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.21650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 HIS A 368 REMARK 465 ALA A 369 REMARK 465 LEU A 370 REMARK 465 GLY A 371 REMARK 465 SER A 372 REMARK 465 THR A 373 REMARK 465 GLU A 374 REMARK 465 GLY A 375 REMARK 465 PRO A 376 REMARK 465 PHE A 377 REMARK 465 THR A 410 REMARK 465 HIS A 411 REMARK 465 ASP A 412 REMARK 465 PHE A 413 REMARK 465 ASP A 414 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 113 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 219 O HOH A 601 1.53 REMARK 500 OG1 THR A 5 OE2 GLU A 101 1.55 REMARK 500 OG1 THR A 5 OE1 GLU A 101 1.67 REMARK 500 OG1 THR A 5 CD GLU A 101 1.73 REMARK 500 O HOH A 641 O HOH A 724 1.84 REMARK 500 O HOH A 719 O HOH A 728 1.93 REMARK 500 OE1 GLN A 423 O HOH A 602 2.01 REMARK 500 O HOH A 678 O HOH A 679 2.01 REMARK 500 CB THR A 5 OE2 GLU A 101 2.08 REMARK 500 NE2 HIS A 254 O HOH A 603 2.10 REMARK 500 OD2 ASP A 44 O HOH A 604 2.14 REMARK 500 CE1 HIS A 155 N6 SPD A 502 2.14 REMARK 500 NE2 HIS A 155 N6 SPD A 502 2.16 REMARK 500 CG2 THR A 5 OE2 GLU A 101 2.16 REMARK 500 ND1 HIS A 446 OD2 ASP A 450 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 177 NE2 HIS A 439 1455 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 177 CB GLU A 177 CG 0.122 REMARK 500 PRO A 381 CD PRO A 381 N 0.156 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE A 4 CB - CA - C ANGL. DEV. = -33.6 DEGREES REMARK 500 THR A 5 C - N - CA ANGL. DEV. = 16.1 DEGREES REMARK 500 GLU A 219 CB - CA - C ANGL. DEV. = 14.4 DEGREES REMARK 500 ASP A 366 CB - CA - C ANGL. DEV. = -33.7 DEGREES REMARK 500 ASP A 366 N - CA - C ANGL. DEV. = 34.9 DEGREES REMARK 500 LEU A 367 N - CA - CB ANGL. DEV. = 25.2 DEGREES REMARK 500 ASN A 380 CB - CA - C ANGL. DEV. = -14.6 DEGREES REMARK 500 PRO A 381 N - CA - C ANGL. DEV. = 18.5 DEGREES REMARK 500 GLY A 399 N - CA - C ANGL. DEV. = -17.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 81 38.52 73.87 REMARK 500 PRO A 112 108.87 -59.19 REMARK 500 PRO A 114 -171.75 -68.48 REMARK 500 GLU A 115 -2.91 64.66 REMARK 500 ALA A 258 -10.01 65.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE A 4 THR A 5 -147.91 REMARK 500 GLY A 399 TRP A 400 141.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue COA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SPD A 502 DBREF 6LPV A 1 451 UNP O64470 SHT_ARATH 1 451 SEQRES 1 A 451 MET ALA PRO ILE THR PHE ARG LYS SER TYR THR ILE VAL SEQRES 2 A 451 PRO ALA GLU PRO THR TRP SER GLY ARG PHE PRO LEU ALA SEQRES 3 A 451 GLU TRP ASP GLN VAL GLY THR ILE THR HIS ILE PRO THR SEQRES 4 A 451 LEU TYR PHE TYR ASP LYS PRO SER GLU SER PHE GLN GLY SEQRES 5 A 451 ASN VAL VAL GLU ILE LEU LYS THR SER LEU SER ARG VAL SEQRES 6 A 451 LEU VAL HIS PHE TYR PRO MET ALA GLY ARG LEU ARG TRP SEQRES 7 A 451 LEU PRO ARG GLY ARG PHE GLU LEU ASN CYS ASN ALA GLU SEQRES 8 A 451 GLY VAL GLU PHE ILE GLU ALA GLU SER GLU GLY LYS LEU SEQRES 9 A 451 SER ASP PHE LYS ASP PHE SER PRO THR PRO GLU PHE GLU SEQRES 10 A 451 ASN LEU MET PRO GLN VAL ASN TYR LYS ASN PRO ILE GLU SEQRES 11 A 451 THR ILE PRO LEU PHE LEU ALA GLN VAL THR LYS PHE LYS SEQRES 12 A 451 CYS GLY GLY ILE SER LEU SER VAL ASN VAL SER HIS ALA SEQRES 13 A 451 ILE VAL ASP GLY GLN SER ALA LEU HIS LEU ILE SER GLU SEQRES 14 A 451 TRP GLY ARG LEU ALA ARG GLY GLU PRO LEU GLU THR VAL SEQRES 15 A 451 PRO PHE LEU ASP ARG LYS ILE LEU TRP ALA GLY GLU PRO SEQRES 16 A 451 LEU PRO PRO PHE VAL SER PRO PRO LYS PHE ASP HIS LYS SEQRES 17 A 451 GLU PHE ASP GLN PRO PRO PHE LEU ILE GLY GLU THR ASP SEQRES 18 A 451 ASN VAL GLU GLU ARG LYS LYS LYS THR ILE VAL VAL MET SEQRES 19 A 451 LEU PRO LEU SER THR SER GLN LEU GLN LYS LEU ARG SER SEQRES 20 A 451 LYS ALA ASN GLY SER LYS HIS SER ASP PRO ALA LYS GLY SEQRES 21 A 451 PHE THR ARG TYR GLU THR VAL THR GLY HIS VAL TRP ARG SEQRES 22 A 451 CYS ALA CYS LYS ALA ARG GLY HIS SER PRO GLU GLN PRO SEQRES 23 A 451 THR ALA LEU GLY ILE CYS ILE ASP THR ARG SER ARG MET SEQRES 24 A 451 GLU PRO PRO LEU PRO ARG GLY TYR PHE GLY ASN ALA THR SEQRES 25 A 451 LEU ASP VAL VAL ALA ALA SER THR SER GLY GLU LEU ILE SEQRES 26 A 451 SER ASN GLU LEU GLY PHE ALA ALA SER LEU ILE SER LYS SEQRES 27 A 451 ALA ILE LYS ASN VAL THR ASN GLU TYR VAL MET ILE GLY SEQRES 28 A 451 ILE GLU TYR LEU LYS ASN GLN LYS ASP LEU LYS LYS PHE SEQRES 29 A 451 GLN ASP LEU HIS ALA LEU GLY SER THR GLU GLY PRO PHE SEQRES 30 A 451 TYR GLY ASN PRO ASN LEU GLY VAL VAL SER TRP LEU THR SEQRES 31 A 451 LEU PRO MET TYR GLY LEU ASP PHE GLY TRP GLY LYS GLU SEQRES 32 A 451 PHE TYR THR GLY PRO GLY THR HIS ASP PHE ASP GLY ASP SEQRES 33 A 451 SER LEU ILE LEU PRO ASP GLN ASN GLU ASP GLY SER VAL SEQRES 34 A 451 ILE LEU ALA THR CYS LEU GLN VAL ALA HIS MET GLU ALA SEQRES 35 A 451 PHE LYS LYS HIS PHE TYR GLU ASP ILE HET COA A 501 48 HET SPD A 502 10 HETNAM COA COENZYME A HETNAM SPD SPERMIDINE HETSYN SPD N-(2-AMINO-PROPYL)-1,4-DIAMINOBUTANE; PA(34) FORMUL 2 COA C21 H36 N7 O16 P3 S FORMUL 3 SPD C7 H19 N3 FORMUL 4 HOH *133(H2 O) HELIX 1 AA1 ALA A 26 VAL A 31 5 6 HELIX 2 AA2 ASN A 53 PHE A 69 1 17 HELIX 3 AA3 TYR A 70 GLY A 74 5 5 HELIX 4 AA4 LYS A 103 PHE A 107 5 5 HELIX 5 AA5 PRO A 128 ILE A 132 5 5 HELIX 6 AA6 ASP A 159 ARG A 175 1 17 HELIX 7 AA7 ASP A 186 TRP A 191 5 6 HELIX 8 AA8 HIS A 207 ASP A 211 5 5 HELIX 9 AA9 ASN A 222 LYS A 228 1 7 HELIX 10 AB1 SER A 238 SER A 252 1 15 HELIX 11 AB2 THR A 262 GLY A 280 1 19 HELIX 12 AB3 SER A 321 ASN A 327 1 7 HELIX 13 AB4 GLU A 328 ASN A 342 1 15 HELIX 14 AB5 THR A 344 GLN A 358 1 15 HELIX 15 AB6 ASP A 360 GLN A 365 5 6 HELIX 16 AB7 VAL A 437 GLU A 449 1 13 SHEET 1 AA1 6 ILE A 4 ILE A 12 0 SHEET 2 AA1 6 VAL A 93 SER A 100 -1 O PHE A 95 N TYR A 10 SHEET 3 AA1 6 PHE A 135 LYS A 141 1 O ALA A 137 N ILE A 96 SHEET 4 AA1 6 ILE A 147 SER A 154 -1 O ASN A 152 N LEU A 136 SHEET 5 AA1 6 HIS A 36 TYR A 43 -1 N ILE A 37 O VAL A 153 SHEET 6 AA1 6 TYR A 405 PRO A 408 -1 O GLY A 407 N LEU A 40 SHEET 1 AA2 3 GLY A 21 PRO A 24 0 SHEET 2 AA2 3 PHE A 84 CYS A 88 -1 O LEU A 86 N PHE A 23 SHEET 3 AA2 3 ARG A 75 TRP A 78 -1 N ARG A 75 O ASN A 87 SHEET 1 AA3 6 THR A 230 LEU A 237 0 SHEET 2 AA3 6 VAL A 429 GLN A 436 -1 O LEU A 431 N LEU A 235 SHEET 3 AA3 6 ASP A 416 PRO A 421 -1 N LEU A 420 O ILE A 430 SHEET 4 AA3 6 LEU A 383 SER A 387 1 N VAL A 386 O SER A 417 SHEET 5 AA3 6 PRO A 286 ASP A 294 1 N GLY A 290 O VAL A 385 SHEET 6 AA3 6 THR A 312 THR A 320 -1 O ALA A 317 N LEU A 289 CISPEP 1 GLU A 300 PRO A 301 0 -3.73 CISPEP 2 ASN A 380 PRO A 381 0 9.19 CISPEP 3 PHE A 398 GLY A 399 0 1.99 SITE 1 AC1 22 GLY A 160 ARG A 246 THR A 262 ARG A 263 SITE 2 AC1 22 TYR A 264 CYS A 292 ILE A 293 ASP A 294 SITE 3 AC1 22 ARG A 298 SER A 326 ASN A 327 GLU A 328 SITE 4 AC1 22 SER A 387 THR A 390 SPD A 502 HOH A 609 SITE 5 AC1 22 HOH A 627 HOH A 630 HOH A 634 HOH A 647 SITE 6 AC1 22 HOH A 652 HOH A 677 SITE 1 AC2 7 THR A 33 HIS A 155 CYS A 292 THR A 312 SITE 2 AC2 7 ASP A 314 ASP A 416 COA A 501 CRYST1 57.364 90.433 95.248 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017433 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011058 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010499 0.00000