HEADER GENE REGULATION 13-JAN-20 6LQF TITLE CRYSTAL STRUCTURE OF ARABIDOPSIS ARID5 ARID-PHD CASSETTE IN COMPLEX TITLE 2 WITH H3K4ME3 PEPTIDE AND DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ARID DOMAIN-CONTAINING PROTEIN 4; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 15-MER PEPTIDE FROM HISTONE H3.2; COMPND 8 CHAIN: P; COMPND 9 SYNONYM: H3(1-15)K4ME3 PEPTIDE, HISTONE H3.1; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (5'-D(*TP*TP*TP*AP*GP*AP*TP*CP*TP*AP*AP*A)-3'); COMPND 13 CHAIN: B, C; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: ARID4, AT3G43240, F7K15.90; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PSUMO; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 14 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 15 ORGANISM_TAXID: 3702; SOURCE 16 MOL_ID: 3; SOURCE 17 SYNTHETIC: YES; SOURCE 18 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 19 ORGANISM_TAXID: 32630 KEYWDS ARID5, PHD FINGER, ARID DOMAIN, GENE REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR R.LIU,J.DU REVDAT 2 19-AUG-20 6LQF 1 JRNL REVDAT 1 03-JUN-20 6LQF 0 JRNL AUTH L.M.TAN,R.LIU,B.W.GU,C.J.ZHANG,J.LUO,J.GUO,Y.WANG,L.CHEN, JRNL AUTH 2 X.DU,S.LI,C.R.SHAO,Y.N.SU,X.W.CAI,R.N.LIN,L.LI,S.CHEN,J.DU, JRNL AUTH 3 X.J.HE JRNL TITL DUAL RECOGNITION OF H3K4ME3 AND DNA BY THE ISWI COMPONENT JRNL TITL 2 ARID5 REGULATES THE FLORAL TRANSITION IN ARABIDOPSIS. JRNL REF PLANT CELL V. 32 2178 2020 JRNL REFN ESSN 1532-298X JRNL PMID 32358072 JRNL DOI 10.1105/TPC.19.00944 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.04 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 47917 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 2418 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.0000 - 3.8526 0.85 2531 157 0.1533 0.1509 REMARK 3 2 3.8526 - 3.0597 0.93 2695 137 0.1571 0.1819 REMARK 3 3 3.0597 - 2.6734 0.94 2664 144 0.1856 0.2037 REMARK 3 4 2.6734 - 2.4292 0.95 2696 135 0.1876 0.1906 REMARK 3 5 2.4292 - 2.2552 0.96 2726 140 0.1818 0.2065 REMARK 3 6 2.2552 - 2.1223 0.95 2683 145 0.1772 0.2094 REMARK 3 7 2.1223 - 2.0161 0.96 2688 152 0.1780 0.1985 REMARK 3 8 2.0161 - 1.9284 0.96 2687 152 0.1806 0.2062 REMARK 3 9 1.9284 - 1.8542 0.96 2670 151 0.1848 0.1844 REMARK 3 10 1.8542 - 1.7902 0.96 2688 126 0.1762 0.1944 REMARK 3 11 1.7902 - 1.7342 0.95 2650 152 0.1760 0.2225 REMARK 3 12 1.7342 - 1.6847 0.96 2688 151 0.1861 0.2220 REMARK 3 13 1.6847 - 1.6403 0.96 2694 121 0.1835 0.1955 REMARK 3 14 1.6403 - 1.6003 0.96 2685 135 0.1995 0.2510 REMARK 3 15 1.6003 - 1.5639 0.97 2693 157 0.2101 0.2467 REMARK 3 16 1.5639 - 1.5307 0.96 2693 135 0.2331 0.2785 REMARK 3 17 1.5307 - 1.5000 0.95 2668 128 0.2658 0.2809 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.100 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 2012 REMARK 3 ANGLE : 1.612 2816 REMARK 3 CHIRALITY : 0.077 299 REMARK 3 PLANARITY : 0.010 283 REMARK 3 DIHEDRAL : 19.975 766 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 555 THROUGH 596 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.8238 15.2650 28.1628 REMARK 3 T TENSOR REMARK 3 T11: 0.1962 T22: 0.2196 REMARK 3 T33: 0.2176 T12: 0.0178 REMARK 3 T13: -0.0337 T23: -0.0044 REMARK 3 L TENSOR REMARK 3 L11: 0.9276 L22: 0.4515 REMARK 3 L33: 0.7322 L12: -0.2636 REMARK 3 L13: -0.7167 L23: 0.0628 REMARK 3 S TENSOR REMARK 3 S11: -0.0326 S12: 0.0690 S13: -0.0590 REMARK 3 S21: -0.1182 S22: 0.0885 S23: -0.3120 REMARK 3 S31: 0.1353 S32: 0.1886 S33: -0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 597 THROUGH 661 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.2094 22.8759 32.6924 REMARK 3 T TENSOR REMARK 3 T11: 0.1483 T22: 0.1626 REMARK 3 T33: 0.1556 T12: 0.0026 REMARK 3 T13: 0.0038 T23: -0.0047 REMARK 3 L TENSOR REMARK 3 L11: 0.4352 L22: 0.4274 REMARK 3 L33: 0.2429 L12: 0.0679 REMARK 3 L13: -0.0115 L23: 0.2179 REMARK 3 S TENSOR REMARK 3 S11: 0.0509 S12: 0.0082 S13: -0.0281 REMARK 3 S21: 0.0707 S22: -0.0358 S23: 0.0388 REMARK 3 S31: -0.0166 S32: -0.0334 S33: 0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 662 THROUGH 690 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.2679 33.6616 38.8455 REMARK 3 T TENSOR REMARK 3 T11: 0.2153 T22: 0.1937 REMARK 3 T33: 0.2147 T12: -0.0170 REMARK 3 T13: -0.0621 T23: -0.0164 REMARK 3 L TENSOR REMARK 3 L11: 0.1050 L22: 0.0905 REMARK 3 L33: 0.2099 L12: -0.0803 REMARK 3 L13: 0.0143 L23: 0.0323 REMARK 3 S TENSOR REMARK 3 S11: -0.0254 S12: -0.0544 S13: 0.0949 REMARK 3 S21: 0.3721 S22: 0.0160 S23: -0.2841 REMARK 3 S31: -0.0352 S32: 0.0623 S33: 0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 691 THROUGH 729 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.5044 46.5779 35.6167 REMARK 3 T TENSOR REMARK 3 T11: 0.2344 T22: 0.2038 REMARK 3 T33: 0.2302 T12: -0.0146 REMARK 3 T13: -0.0211 T23: -0.0138 REMARK 3 L TENSOR REMARK 3 L11: 0.3259 L22: 0.4167 REMARK 3 L33: 0.2264 L12: -0.1451 REMARK 3 L13: -0.0035 L23: -0.1450 REMARK 3 S TENSOR REMARK 3 S11: -0.1315 S12: 0.0363 S13: 0.3249 REMARK 3 S21: 0.0768 S22: 0.0882 S23: 0.1213 REMARK 3 S31: -0.2000 S32: 0.0347 S33: -0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'P' AND (RESID 1 THROUGH 6 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.3752 36.7943 38.6019 REMARK 3 T TENSOR REMARK 3 T11: 0.1145 T22: 0.1431 REMARK 3 T33: 0.1042 T12: -0.0059 REMARK 3 T13: -0.0081 T23: -0.0214 REMARK 3 L TENSOR REMARK 3 L11: 0.8788 L22: 2.8988 REMARK 3 L33: 4.3098 L12: -0.2211 REMARK 3 L13: 0.4580 L23: -0.7608 REMARK 3 S TENSOR REMARK 3 S11: 0.1357 S12: -0.0783 S13: 0.0571 REMARK 3 S21: 0.1750 S22: -0.0471 S23: -0.3753 REMARK 3 S31: -0.0186 S32: 0.4065 S33: 0.0386 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.2270 20.8123 42.0656 REMARK 3 T TENSOR REMARK 3 T11: 0.1940 T22: 0.1883 REMARK 3 T33: 0.2299 T12: -0.0129 REMARK 3 T13: 0.0638 T23: -0.0160 REMARK 3 L TENSOR REMARK 3 L11: 0.6000 L22: 0.1336 REMARK 3 L33: 0.4658 L12: 0.0577 REMARK 3 L13: -0.0927 L23: -0.2741 REMARK 3 S TENSOR REMARK 3 S11: 0.1670 S12: 0.0077 S13: -0.0879 REMARK 3 S21: 0.0722 S22: -0.2495 S23: -0.1947 REMARK 3 S31: 0.1765 S32: -0.1623 S33: 0.0001 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.9827 20.6462 41.3061 REMARK 3 T TENSOR REMARK 3 T11: 0.2315 T22: 0.2132 REMARK 3 T33: 0.1953 T12: -0.0274 REMARK 3 T13: 0.0607 T23: -0.0585 REMARK 3 L TENSOR REMARK 3 L11: 0.6061 L22: 0.2061 REMARK 3 L33: 0.3833 L12: 0.3133 REMARK 3 L13: 0.0669 L23: -0.1107 REMARK 3 S TENSOR REMARK 3 S11: 0.1122 S12: 0.1304 S13: -0.0806 REMARK 3 S21: 0.1471 S22: -0.2738 S23: 0.0073 REMARK 3 S31: 0.1209 S32: -0.1494 S33: -0.0108 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6LQF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1300014347. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49942 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.74600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE, PH 5.0, 15% MPD, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.08650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.47900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.71400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.47900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.08650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.71400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 544 REMARK 465 GLN A 545 REMARK 465 ILE A 546 REMARK 465 ILE A 547 REMARK 465 SER A 548 REMARK 465 LEU A 549 REMARK 465 ASN A 550 REMARK 465 PRO A 551 REMARK 465 LEU A 552 REMARK 465 PRO A 553 REMARK 465 LEU A 554 REMARK 465 SER A 730 REMARK 465 ASN A 731 REMARK 465 TYR A 732 REMARK 465 ARG A 733 REMARK 465 LYS A 734 REMARK 465 LYS A 735 REMARK 465 SER A 736 REMARK 465 GLN A 737 REMARK 465 LYS A 738 REMARK 465 THR A 739 REMARK 465 SER A 740 REMARK 465 ASN A 741 REMARK 465 GLY A 742 REMARK 465 GLY A 743 REMARK 465 LEU A 744 REMARK 465 LEU A 745 REMARK 465 VAL A 746 REMARK 465 PRO A 747 REMARK 465 ALA P 7 REMARK 465 ARG P 8 REMARK 465 LYS P 9 REMARK 465 SER P 10 REMARK 465 THR P 11 REMARK 465 GLY P 12 REMARK 465 GLY P 13 REMARK 465 LYS P 14 REMARK 465 ALA P 15 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 559 CA - CB - SG ANGL. DEV. = 8.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 559 -48.23 52.70 REMARK 500 HIS A 585 57.87 -94.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1031 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH A1032 DISTANCE = 6.72 ANGSTROMS REMARK 525 HOH A1033 DISTANCE = 6.95 ANGSTROMS REMARK 525 HOH B 132 DISTANCE = 5.86 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 801 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 557 ND1 REMARK 620 2 CYS A 559 SG 109.0 REMARK 620 3 ASP A 575 OD2 112.8 114.7 REMARK 620 4 HIS A 669 NE2 104.8 114.8 100.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 803 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 677 SG REMARK 620 2 CYS A 680 SG 106.5 REMARK 620 3 HIS A 699 ND1 98.8 104.6 REMARK 620 4 CYS A 702 SG 121.0 109.1 115.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 802 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 691 SG REMARK 620 2 CYS A 694 SG 104.1 REMARK 620 3 CYS A 724 SG 110.3 118.0 REMARK 620 4 CYS A 727 SG 110.7 105.2 108.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 803 DBREF 6LQF A 545 747 UNP Q6NQ79 ARID4_ARATH 545 747 DBREF 6LQF P 1 15 UNP P59226 H32_ARATH 2 16 DBREF 6LQF B 1 12 PDB 6LQF 6LQF 1 12 DBREF 6LQF C 1 12 PDB 6LQF 6LQF 1 12 SEQADV 6LQF SER A 544 UNP Q6NQ79 EXPRESSION TAG SEQRES 1 A 204 SER GLN ILE ILE SER LEU ASN PRO LEU PRO LEU LYS LYS SEQRES 2 A 204 HIS ASP CYS GLY ARG ALA HIS ILE GLN VAL CYS SER GLU SEQRES 3 A 204 GLU GLU PHE LEU ARG ASP VAL MET GLN PHE LEU LEU ILE SEQRES 4 A 204 ARG GLY HIS THR ARG LEU VAL PRO PRO GLY GLY LEU ALA SEQRES 5 A 204 GLU PHE PRO ASP ALA VAL LEU ASN SER LYS ARG LEU ASP SEQRES 6 A 204 LEU PHE ASN LEU TYR ARG GLU VAL VAL SER ARG GLY GLY SEQRES 7 A 204 PHE HIS VAL GLY ASN GLY ILE ASN TRP LYS GLY GLN VAL SEQRES 8 A 204 PHE SER LYS MET ARG ASN HIS THR LEU THR ASN ARG MET SEQRES 9 A 204 THR GLY VAL GLY ASN THR LEU LYS ARG HIS TYR GLU THR SEQRES 10 A 204 TYR LEU LEU GLU TYR GLU TYR ALA HIS ASP ASP VAL ASP SEQRES 11 A 204 GLY GLU CYS CYS LEU ILE CYS ARG SER SER THR ALA GLY SEQRES 12 A 204 ASP TRP VAL ASN CYS GLY SER CYS GLY GLU TRP ALA HIS SEQRES 13 A 204 PHE GLY CYS ASP ARG ARG PRO GLY LEU GLY ALA PHE LYS SEQRES 14 A 204 ASP TYR ALA LYS THR ASP GLY LEU GLU TYR VAL CYS PRO SEQRES 15 A 204 ASN CYS SER VAL SER ASN TYR ARG LYS LYS SER GLN LYS SEQRES 16 A 204 THR SER ASN GLY GLY LEU LEU VAL PRO SEQRES 1 P 15 ALA ARG THR M3L GLN THR ALA ARG LYS SER THR GLY GLY SEQRES 2 P 15 LYS ALA SEQRES 1 B 12 DT DT DT DA DG DA DT DC DT DA DA DA SEQRES 1 C 12 DT DT DT DA DG DA DT DC DT DA DA DA MODRES 6LQF M3L P 4 LYS MODIFIED RESIDUE HET M3L P 4 12 HET ZN A 801 1 HET ZN A 802 1 HET ZN A 803 1 HETNAM M3L N-TRIMETHYLLYSINE HETNAM ZN ZINC ION FORMUL 2 M3L C9 H21 N2 O2 1+ FORMUL 5 ZN 3(ZN 2+) FORMUL 8 HOH *208(H2 O) HELIX 1 AA1 SER A 568 ARG A 583 1 16 HELIX 2 AA2 HIS A 585 VAL A 589 5 5 HELIX 3 AA3 GLY A 592 PHE A 597 5 6 HELIX 4 AA4 ASP A 608 SER A 618 1 11 HELIX 5 AA5 ARG A 619 GLY A 620 5 2 HELIX 6 AA6 GLY A 621 ILE A 628 5 8 HELIX 7 AA7 ASN A 629 VAL A 634 1 6 HELIX 8 AA8 PHE A 635 MET A 638 5 4 HELIX 9 AA9 GLY A 649 LEU A 662 1 14 HELIX 10 AB1 LEU A 662 ALA A 668 1 7 HELIX 11 AB2 GLY A 701 ASP A 703 5 3 HELIX 12 AB3 ALA A 710 LYS A 716 1 7 SHEET 1 AA1 2 VAL A 601 LEU A 602 0 SHEET 2 AA1 2 LYS A 605 ARG A 606 -1 O LYS A 605 N LEU A 602 SHEET 1 AA2 3 TRP A 697 HIS A 699 0 SHEET 2 AA2 3 ASP A 687 ASN A 690 -1 N VAL A 689 O ALA A 698 SHEET 3 AA2 3 THR P 3 GLN P 5 -1 O M3L P 4 N TRP A 688 LINK C THR P 3 N M3L P 4 1555 1555 1.33 LINK C M3L P 4 N GLN P 5 1555 1555 1.33 LINK ND1 HIS A 557 ZN ZN A 801 1555 1555 2.05 LINK SG CYS A 559 ZN ZN A 801 1555 1555 2.20 LINK OD2 ASP A 575 ZN ZN A 801 1555 1555 2.08 LINK NE2 HIS A 669 ZN ZN A 801 1555 1555 2.04 LINK SG CYS A 677 ZN ZN A 803 1555 1555 2.37 LINK SG CYS A 680 ZN ZN A 803 1555 1555 2.40 LINK SG CYS A 691 ZN ZN A 802 1555 1555 2.35 LINK SG CYS A 694 ZN ZN A 802 1555 1555 2.38 LINK ND1 HIS A 699 ZN ZN A 803 1555 1555 2.09 LINK SG CYS A 702 ZN ZN A 803 1555 1555 2.28 LINK SG CYS A 724 ZN ZN A 802 1555 1555 2.31 LINK SG CYS A 727 ZN ZN A 802 1555 1555 2.29 CISPEP 1 PHE A 597 PRO A 598 0 -7.63 SITE 1 AC1 4 HIS A 557 CYS A 559 ASP A 575 HIS A 669 SITE 1 AC2 4 CYS A 691 CYS A 694 CYS A 724 CYS A 727 SITE 1 AC3 4 CYS A 677 CYS A 680 HIS A 699 CYS A 702 CRYST1 56.173 59.428 92.958 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017802 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016827 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010758 0.00000