HEADER MEMBRANE PROTEIN 13-JAN-20 6LQK TITLE CRYSTAL STRUCTURE OF HONEYBEE RYR NTD COMPND MOL_ID: 1; COMPND 2 MOLECULE: RYANODINE RECEPTOR; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: APIS MELLIFERA; SOURCE 3 ORGANISM_COMMON: HONEYBEE; SOURCE 4 ORGANISM_TAXID: 7460; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HONEY BEE, RYANODINE RECEPTOR, N-TERMINAL DOMAIN, CRYSTAL STRUCTURE., KEYWDS 2 MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.ZHOU,L.LIN,Z.YUCHI REVDAT 2 29-NOV-23 6LQK 1 REMARK REVDAT 1 20-JAN-21 6LQK 0 JRNL AUTH Y.ZHOU,W.WANG,N.M.SALAUDDIN,L.LIN,M.YOU,S.YOU,Z.YUCHI JRNL TITL CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAIN OF RYANODINE JRNL TITL 2 RECEPTOR FROM THE HONEYBEE, APIS MELLIFERA. JRNL REF INSECT BIOCHEM.MOL.BIOL. V. 125 03454 2020 JRNL REFN ISSN 0965-1748 JRNL PMID 32781205 JRNL DOI 10.1016/J.IBMB.2020.103454 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3247 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 13540 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1360 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.6820 - 5.3794 1.00 1392 157 0.2418 0.2591 REMARK 3 2 5.3794 - 4.2717 1.00 1315 148 0.1840 0.2378 REMARK 3 3 4.2717 - 3.7323 0.99 1286 142 0.2044 0.2680 REMARK 3 4 3.7323 - 3.3913 0.99 1264 141 0.2218 0.3365 REMARK 3 5 3.3913 - 3.1483 0.98 1242 137 0.2343 0.3189 REMARK 3 6 3.1483 - 2.9628 0.97 1227 134 0.2398 0.3114 REMARK 3 7 2.9628 - 2.8145 0.95 1186 130 0.2287 0.2998 REMARK 3 8 2.8145 - 2.6920 0.90 1138 129 0.2557 0.3665 REMARK 3 9 2.6920 - 2.5884 0.87 1084 126 0.2746 0.3330 REMARK 3 10 2.5884 - 2.4991 0.82 1046 116 0.2759 0.3979 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.640 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6LQK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1300015227. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JAN-19 REMARK 200 TEMPERATURE (KELVIN) : 193.15 REMARK 200 PH : 8.5-9.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 R CDTE 300K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14282 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.499 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.12200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.69900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5Y9V REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUM CHLORIDE HEXAHYDRATE, REMARK 280 34%-40% PEG 4000, 0.1 M TRIS, PH 8.5-9.4, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.02700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.93900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.68150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.93900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.02700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.68150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 90 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 3 REMARK 465 SER A 4 REMARK 465 GLU A 5 REMARK 465 GLY A 6 REMARK 465 GLY A 7 REMARK 465 SER A 8 REMARK 465 GLU A 9 REMARK 465 GLN A 10 REMARK 465 ASP A 11 REMARK 465 ASP A 12 REMARK 465 ALA A 51 REMARK 465 ASP A 52 REMARK 465 LYS A 53 REMARK 465 ASN A 54 REMARK 465 ILE A 55 REMARK 465 PRO A 56 REMARK 465 ALA A 81 REMARK 465 ALA A 82 REMARK 465 GLY A 83 REMARK 465 SER A 84 REMARK 465 GLU A 85 REMARK 465 THR A 86 REMARK 465 GLY A 87 REMARK 465 LYS A 88 REMARK 465 GLY A 89 REMARK 465 THR A 90 REMARK 465 GLY A 91 REMARK 465 GLY A 203 REMARK 465 ILE A 204 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ASP B 3 REMARK 465 SER B 4 REMARK 465 GLU B 5 REMARK 465 GLY B 6 REMARK 465 GLY B 7 REMARK 465 SER B 8 REMARK 465 GLU B 9 REMARK 465 GLN B 10 REMARK 465 ASP B 11 REMARK 465 ASP B 12 REMARK 465 VAL B 13 REMARK 465 ALA B 51 REMARK 465 ASP B 52 REMARK 465 LYS B 53 REMARK 465 ASN B 54 REMARK 465 ILE B 55 REMARK 465 PRO B 56 REMARK 465 PRO B 57 REMARK 465 ASP B 58 REMARK 465 VAL B 79 REMARK 465 THR B 80 REMARK 465 ALA B 81 REMARK 465 ALA B 82 REMARK 465 GLY B 83 REMARK 465 SER B 84 REMARK 465 GLU B 85 REMARK 465 THR B 86 REMARK 465 GLY B 87 REMARK 465 LYS B 88 REMARK 465 GLY B 89 REMARK 465 THR B 90 REMARK 465 GLY B 91 REMARK 465 SER B 92 REMARK 465 GLY B 93 REMARK 465 THR B 202 REMARK 465 GLY B 203 REMARK 465 ILE B 204 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 13 CG1 CG2 REMARK 470 ARG A 17 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 19 CG CD OE1 OE2 REMARK 470 THR A 29 OG1 CG2 REMARK 470 GLU A 31 CG CD OE1 OE2 REMARK 470 ARG A 32 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 38 CG CD OE1 OE2 REMARK 470 ASN A 42 CG OD1 ND2 REMARK 470 ASN A 49 CG OD1 ND2 REMARK 470 ASP A 58 CG OD1 OD2 REMARK 470 LEU A 59 CG CD1 CD2 REMARK 470 GLN A 68 CG CD OE1 NE2 REMARK 470 ARG A 73 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 76 CG CD OE1 NE2 REMARK 470 HIS A 94 CG ND1 CD2 CE1 NE2 REMARK 470 SER A 121 OG REMARK 470 SER A 122 OG REMARK 470 ASN A 123 CG OD1 ND2 REMARK 470 LYS A 125 CG CD CE NZ REMARK 470 GLN A 134 CG CD OE1 NE2 REMARK 470 GLN A 137 CG CD OE1 NE2 REMARK 470 LYS A 150 CG CD CE NZ REMARK 470 GLN A 151 CG CD OE1 NE2 REMARK 470 GLU A 154 CG CD OE1 OE2 REMARK 470 LYS A 157 CG CD CE NZ REMARK 470 LYS A 179 CG CD CE NZ REMARK 470 GLU A 180 CG CD OE1 OE2 REMARK 470 LEU A 183 CG CD1 CD2 REMARK 470 VAL A 185 CG1 CG2 REMARK 470 GLN A 198 CG CD OE1 NE2 REMARK 470 THR A 202 OG1 CG2 REMARK 470 ARG B 17 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 19 CG CD OE1 OE2 REMARK 470 THR B 29 OG1 CG2 REMARK 470 GLU B 31 CG CD OE1 OE2 REMARK 470 ARG B 32 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 42 CG OD1 ND2 REMARK 470 ARG B 43 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 49 CG OD1 ND2 REMARK 470 VAL B 65 CG1 CG2 REMARK 470 GLN B 68 CG CD OE1 NE2 REMARK 470 ARG B 73 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 76 CG CD OE1 NE2 REMARK 470 LEU B 78 CG CD1 CD2 REMARK 470 HIS B 94 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 95 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 104 CG CD1 CD2 REMARK 470 ARG B 106 CG CD NE CZ NH1 NH2 REMARK 470 SER B 121 OG REMARK 470 SER B 122 OG REMARK 470 ASN B 123 CG OD1 ND2 REMARK 470 ASP B 124 CG OD1 OD2 REMARK 470 LYS B 125 CG CD CE NZ REMARK 470 SER B 136 OG REMARK 470 GLN B 137 CG CD OE1 NE2 REMARK 470 LYS B 150 CG CD CE NZ REMARK 470 GLN B 151 CG CD OE1 NE2 REMARK 470 GLU B 154 CG CD OE1 OE2 REMARK 470 LYS B 157 CG CD CE NZ REMARK 470 LYS B 179 CG CD CE NZ REMARK 470 GLU B 180 CG CD OE1 OE2 REMARK 470 ASN B 181 CG OD1 ND2 REMARK 470 ASP B 182 CG OD1 OD2 REMARK 470 LEU B 183 CG CD1 CD2 REMARK 470 SER B 184 OG REMARK 470 VAL B 185 CG1 CG2 REMARK 470 GLN B 198 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 95 O HOH A 401 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 19 -2.14 67.55 REMARK 500 ASP A 58 45.59 -105.32 REMARK 500 LEU A 59 32.82 -159.52 REMARK 500 HIS A 94 55.41 -109.69 REMARK 500 ASN A 123 8.72 86.44 REMARK 500 VAL A 160 127.43 -38.93 REMARK 500 ASP A 182 72.91 33.50 REMARK 500 GLU B 19 -3.13 67.01 REMARK 500 GLU B 38 -57.98 -121.12 REMARK 500 PHE B 40 -41.23 -141.16 REMARK 500 GLN B 76 -2.00 -59.14 REMARK 500 SER B 121 62.15 -157.99 REMARK 500 SER B 122 -159.71 -148.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 301 DBREF1 6LQK A 1 204 UNP A0A088AV96_APIME DBREF2 6LQK A A0A088AV96 1 204 DBREF1 6LQK B 1 204 UNP A0A088AV96_APIME DBREF2 6LQK B A0A088AV96 1 204 SEQRES 1 A 204 MET ALA ASP SER GLU GLY GLY SER GLU GLN ASP ASP VAL SEQRES 2 A 204 SER PHE LEU ARG THR GLU ASP MET VAL CYS LEU SER CYS SEQRES 3 A 204 THR ALA THR GLY GLU ARG VAL CYS LEU ALA ALA GLU GLY SEQRES 4 A 204 PHE GLY ASN ARG HIS CYS PHE LEU GLU ASN ILE ALA ASP SEQRES 5 A 204 LYS ASN ILE PRO PRO ASP LEU SER GLN CYS VAL PHE VAL SEQRES 6 A 204 ILE GLU GLN ALA LEU SER VAL ARG ALA LEU GLN GLU LEU SEQRES 7 A 204 VAL THR ALA ALA GLY SER GLU THR GLY LYS GLY THR GLY SEQRES 8 A 204 SER GLY HIS ARG THR LEU LEU TYR GLY ASN ALA ILE LEU SEQRES 9 A 204 LEU ARG HIS GLN ASN SER ASP MET TYR LEU ALA CYS LEU SEQRES 10 A 204 SER THR SER SER SER ASN ASP LYS LEU ALA PHE ASP VAL SEQRES 11 A 204 GLY LEU GLN GLN HIS SER GLN GLY GLU ALA CYS TRP TRP SEQRES 12 A 204 THR VAL HIS PRO ALA SER LYS GLN ARG SER GLU GLY GLU SEQRES 13 A 204 LYS VAL ARG VAL GLY ASP ASP LEU ILE LEU VAL SER VAL SEQRES 14 A 204 ALA THR GLU ARG TYR LEU HIS THR THR LYS GLU ASN ASP SEQRES 15 A 204 LEU SER VAL VAL ASN ALA SER PHE HIS VAL THR HIS TRP SEQRES 16 A 204 SER VAL GLN PRO TYR GLY THR GLY ILE SEQRES 1 B 204 MET ALA ASP SER GLU GLY GLY SER GLU GLN ASP ASP VAL SEQRES 2 B 204 SER PHE LEU ARG THR GLU ASP MET VAL CYS LEU SER CYS SEQRES 3 B 204 THR ALA THR GLY GLU ARG VAL CYS LEU ALA ALA GLU GLY SEQRES 4 B 204 PHE GLY ASN ARG HIS CYS PHE LEU GLU ASN ILE ALA ASP SEQRES 5 B 204 LYS ASN ILE PRO PRO ASP LEU SER GLN CYS VAL PHE VAL SEQRES 6 B 204 ILE GLU GLN ALA LEU SER VAL ARG ALA LEU GLN GLU LEU SEQRES 7 B 204 VAL THR ALA ALA GLY SER GLU THR GLY LYS GLY THR GLY SEQRES 8 B 204 SER GLY HIS ARG THR LEU LEU TYR GLY ASN ALA ILE LEU SEQRES 9 B 204 LEU ARG HIS GLN ASN SER ASP MET TYR LEU ALA CYS LEU SEQRES 10 B 204 SER THR SER SER SER ASN ASP LYS LEU ALA PHE ASP VAL SEQRES 11 B 204 GLY LEU GLN GLN HIS SER GLN GLY GLU ALA CYS TRP TRP SEQRES 12 B 204 THR VAL HIS PRO ALA SER LYS GLN ARG SER GLU GLY GLU SEQRES 13 B 204 LYS VAL ARG VAL GLY ASP ASP LEU ILE LEU VAL SER VAL SEQRES 14 B 204 ALA THR GLU ARG TYR LEU HIS THR THR LYS GLU ASN ASP SEQRES 15 B 204 LEU SER VAL VAL ASN ALA SER PHE HIS VAL THR HIS TRP SEQRES 16 B 204 SER VAL GLN PRO TYR GLY THR GLY ILE HET MG A 301 1 HETNAM MG MAGNESIUM ION FORMUL 3 MG MG 2+ FORMUL 4 HOH *20(H2 O) HELIX 1 AA1 LEU A 59 CYS A 62 5 4 HELIX 2 AA2 SER A 71 VAL A 79 1 9 HELIX 3 AA3 LEU B 59 CYS B 62 5 4 HELIX 4 AA4 SER B 71 GLN B 76 1 6 HELIX 5 AA5 GLY B 138 ALA B 140 5 3 SHEET 1 AA111 PHE A 46 ASN A 49 0 SHEET 2 AA111 GLU A 31 ALA A 36 -1 N ALA A 36 O PHE A 46 SHEET 3 AA111 MET A 21 ALA A 28 -1 N ALA A 28 O GLU A 31 SHEET 4 AA111 PHE A 64 LEU A 70 -1 O PHE A 64 N VAL A 22 SHEET 5 AA111 ALA A 102 HIS A 107 -1 O ARG A 106 N VAL A 65 SHEET 6 AA111 TRP A 142 PRO A 147 -1 O TRP A 143 N ILE A 103 SHEET 7 AA111 ASP A 163 SER A 168 -1 O VAL A 167 N THR A 144 SHEET 8 AA111 TRP A 195 PRO A 199 -1 O TRP A 195 N LEU A 164 SHEET 9 AA111 MET A 21 ALA A 28 -1 N SER A 25 O SER A 196 SHEET 10 AA111 GLU A 31 ALA A 36 -1 O GLU A 31 N ALA A 28 SHEET 11 AA111 PHE A 46 ASN A 49 -1 O PHE A 46 N ALA A 36 SHEET 1 AA214 PHE A 46 ASN A 49 0 SHEET 2 AA214 GLU A 31 ALA A 36 -1 N ALA A 36 O PHE A 46 SHEET 3 AA214 MET A 21 ALA A 28 -1 N ALA A 28 O GLU A 31 SHEET 4 AA214 PHE A 64 LEU A 70 -1 O PHE A 64 N VAL A 22 SHEET 5 AA214 ALA A 102 HIS A 107 -1 O ARG A 106 N VAL A 65 SHEET 6 AA214 MET A 112 SER A 121 -1 O MET A 112 N HIS A 107 SHEET 7 AA214 ASP A 124 GLN A 133 -1 O ASP A 129 N LEU A 117 SHEET 8 AA214 SER A 184 SER A 189 -1 O ALA A 188 N PHE A 128 SHEET 9 AA214 TYR A 174 LYS A 179 -1 N THR A 178 O VAL A 185 SHEET 10 AA214 ASP A 163 SER A 168 -1 N LEU A 166 O LEU A 175 SHEET 11 AA214 TRP A 195 PRO A 199 -1 O TRP A 195 N LEU A 164 SHEET 12 AA214 MET A 21 ALA A 28 -1 N SER A 25 O SER A 196 SHEET 13 AA214 GLU A 31 ALA A 36 -1 O GLU A 31 N ALA A 28 SHEET 14 AA214 PHE A 46 ASN A 49 -1 O PHE A 46 N ALA A 36 SHEET 1 AA3 9 PHE B 46 ASN B 49 0 SHEET 2 AA3 9 GLU B 31 ALA B 36 -1 N ALA B 36 O PHE B 46 SHEET 3 AA3 9 MET B 21 ALA B 28 -1 N LEU B 24 O LEU B 35 SHEET 4 AA3 9 TRP B 195 GLN B 198 -1 O SER B 196 N SER B 25 SHEET 5 AA3 9 ASP B 163 SER B 168 -1 N LEU B 164 O TRP B 195 SHEET 6 AA3 9 TRP B 142 PRO B 147 -1 N HIS B 146 O ILE B 165 SHEET 7 AA3 9 ALA B 102 HIS B 107 -1 N ILE B 103 O TRP B 143 SHEET 8 AA3 9 PHE B 64 LEU B 70 -1 N LEU B 70 O ALA B 102 SHEET 9 AA3 9 MET B 21 ALA B 28 -1 N VAL B 22 O PHE B 64 SHEET 1 AA4 4 TYR B 113 CYS B 116 0 SHEET 2 AA4 4 PHE B 128 GLN B 133 -1 O GLN B 133 N TYR B 113 SHEET 3 AA4 4 LEU B 183 SER B 189 -1 O ALA B 188 N PHE B 128 SHEET 4 AA4 4 TYR B 174 GLU B 180 -1 N THR B 178 O VAL B 185 SSBOND 1 CYS A 34 CYS A 62 1555 1555 2.05 SSBOND 2 CYS B 34 CYS B 62 1555 1555 2.05 SITE 1 AC1 2 ASP A 111 TYR A 113 CRYST1 36.054 75.363 143.878 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027736 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013269 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006950 0.00000