HEADER OXIDOREDUCTASE 15-JAN-20 6LR5 OBSLTE 09-DEC-20 6LR5 7CZA TITLE HEXACHLOROBENZENE MONOOXYGENASE (HCBA1) FROM NOCARDIOIDES SP. STRAIN TITLE 2 PD653 COMPLEXED WITH FMN COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEXACHLOROBENZENE OXIDATIVE DEHALOGENASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOCARDIOIDES SP. PD653; SOURCE 3 ORGANISM_TAXID: 393303; SOURCE 4 GENE: HCBA1, PD653_2189; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: -GROELS KEYWDS HEXACHLOROBENZENE, DEHALOGENASE, MONOOXYGENASE, FMN, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.GUO,J.T.ZHENG,N.Y.ZHOU REVDAT 2 09-DEC-20 6LR5 1 OBSLTE REVDAT 1 29-JAN-20 6LR5 0 JRNL AUTH Y.GUO,D.F.LI,J.T.ZHENG,N.Y.ZHOU JRNL TITL STRUCTURAL AND BIOCHEMICAL CHARACTERIZATION OF JRNL TITL 2 HEXACHLOROBENZENE MONOOXYGENASE FROM NOCARDIOIDES SP. STRAIN JRNL TITL 3 PD653 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 87.45 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 16115 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.281 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 869 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.49 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.58 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1037 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.2370 REMARK 3 BIN FREE R VALUE SET COUNT : 43 REMARK 3 BIN FREE R VALUE : 0.3590 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6836 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 7 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.05000 REMARK 3 B22 (A**2) : -0.38000 REMARK 3 B33 (A**2) : 0.43000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.658 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.488 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 31.325 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.894 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7064 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6528 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9586 ; 1.571 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14976 ; 1.022 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 869 ; 7.704 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 346 ;36.204 ;23.237 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1125 ;18.105 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 61 ;17.772 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1020 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8085 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1696 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6LR5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1300015208. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.77 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16115 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.490 REMARK 200 RESOLUTION RANGE LOW (A) : 87.450 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.25300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.150 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3B9N REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS (PH 5.5) AND 1.8 M REMARK 280 (NH4)2SO4, PH 7.8, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.10750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 85.10750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 56.11750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 69.76700 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 56.11750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 69.76700 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 85.10750 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 56.11750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 69.76700 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 85.10750 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 56.11750 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 69.76700 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP B 324 REMARK 465 ALA B 325 REMARK 465 ASP B 326 REMARK 465 GLN B 327 REMARK 465 PRO B 328 REMARK 465 LEU B 329 REMARK 465 ASP B 330 REMARK 465 THR B 331 REMARK 465 ILE B 332 REMARK 465 GLN B 333 REMARK 465 THR B 334 REMARK 465 GLU B 335 REMARK 465 ALA B 336 REMARK 465 THR B 337 REMARK 465 GLN B 338 REMARK 465 GLY B 339 REMARK 465 ILE B 340 REMARK 465 ALA B 341 REMARK 465 LYS B 342 REMARK 465 LEU B 343 REMARK 465 MET B 344 REMARK 465 MET B 345 REMARK 465 GLU B 346 REMARK 465 ALA B 347 REMARK 465 VAL B 348 REMARK 465 PRO B 349 REMARK 465 ASP B 350 REMARK 465 GLY B 351 REMARK 465 ARG B 352 REMARK 465 PRO B 353 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 25 114.68 -38.39 REMARK 500 PHE A 33 -36.86 -31.81 REMARK 500 ASP A 58 130.39 -170.43 REMARK 500 PHE A 80 119.77 -162.79 REMARK 500 HIS A 154 -66.32 -28.68 REMARK 500 ASN A 200 56.14 38.76 REMARK 500 PRO A 218 -39.39 -36.92 REMARK 500 ARG A 220 -89.67 70.60 REMARK 500 LEU A 320 88.37 -68.80 REMARK 500 ASP A 330 2.75 -68.13 REMARK 500 GLU A 346 30.20 -87.72 REMARK 500 ILE A 449 -54.45 -26.26 REMARK 500 ASP B 58 132.79 -170.92 REMARK 500 ALA B 64 51.07 -103.57 REMARK 500 TYR B 66 71.29 -105.04 REMARK 500 ASP B 68 59.98 -149.11 REMARK 500 TRP B 70 -11.53 -47.07 REMARK 500 PHE B 80 115.29 -168.26 REMARK 500 GLU B 97 -56.35 -120.95 REMARK 500 ASN B 200 55.24 35.28 REMARK 500 LEU B 215 135.23 -34.23 REMARK 500 ARG B 220 -94.19 74.56 REMARK 500 ALA B 229 54.75 -111.65 REMARK 500 THR B 231 -61.89 -26.58 REMARK 500 SER B 321 173.95 174.65 REMARK 500 VAL B 355 -56.70 -140.38 REMARK 500 TYR B 405 -55.99 -120.79 REMARK 500 PHE B 430 71.33 -118.86 REMARK 500 PRO B 431 128.26 -39.63 REMARK 500 ARG B 435 -38.94 -37.23 REMARK 500 GLU B 439 -36.90 -33.77 REMARK 500 ILE B 449 1.03 -59.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN B 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6LR1 RELATED DB: PDB REMARK 900 6LR1 CONTAINS THE SAME PROTEIN WITHOUT FMN DBREF1 6LR5 A 1 451 UNP A0A1V1W347_9ACTN DBREF2 6LR5 A A0A1V1W347 1 451 DBREF1 6LR5 B 1 451 UNP A0A1V1W347_9ACTN DBREF2 6LR5 B A0A1V1W347 1 451 SEQRES 1 A 451 MET ARG ASP THR LEU VAL LEU ASN ALA PHE HIS MET ASN SEQRES 2 A 451 THR VAL CYS HIS MET TYR ASP GLY GLY TRP ARG ASN PRO SEQRES 3 A 451 ALA ASP ARG GLN VAL GLU PHE ALA THR LEU GLU PHE TRP SEQRES 4 A 451 LYS GLU VAL ALA GLN THR LEU GLU ARG GLY PHE PHE ASP SEQRES 5 A 451 SER LEU PHE PHE ALA ASP VAL MET GLY THR ASP ALA ALA SEQRES 6 A 451 TYR GLY ASP SER TRP ASP ILE TYR ALA GLU GLN GLY ILE SEQRES 7 A 451 HIS PHE PRO MET HIS ASP ALA ALA SER LEU VAL ALA ALA SEQRES 8 A 451 LEU ILE PRO HIS THR GLU HIS LEU GLY LEU THR PHE SER SEQRES 9 A 451 SER SER VAL ILE GLN ASP HIS PRO PHE SER PHE ALA LYS SEQRES 10 A 451 ARG ALA SER THR LEU ASP HIS LEU SER GLY GLY ARG VAL SEQRES 11 A 451 GLY TRP ASN ILE VAL THR GLY GLY THR ILE ASN ALA SER SEQRES 12 A 451 GLN ASN PHE GLY TYR ASP SER LEU VAL PRO HIS ASP GLU SEQRES 13 A 451 ARG TYR ALA ILE GLY GLU GLU TYR MET GLU VAL VAL TYR SEQRES 14 A 451 LYS LEU TRP GLU GLY SER TRP ASP GLU GLY ALA LEU VAL SEQRES 15 A 451 ALA ASP LYS THR LYS GLY ILE TYR ALA ASP PRO SER LYS SEQRES 16 A 451 ILE HIS LYS ILE ASN HIS ARG GLY GLU ARG TYR ARG VAL SEQRES 17 A 451 ALA GLY PRO HIS LEU THR LEU PRO SER PRO GLN ARG THR SEQRES 18 A 451 PRO PHE LEU PHE GLN ALA GLY ALA SER THR ALA GLY ARG SEQRES 19 A 451 ALA PHE ALA SER ARG HIS ALA GLU ALA THR LEU VAL LEU SEQRES 20 A 451 CYS LEU THR PRO ASP SER MET ARG VAL ALA TYR LYS GLN SEQRES 21 A 451 MET GLN GLU LEU LEU ALA ALA ALA GLY ARG ALA SER ASP SEQRES 22 A 451 ASP LEU LEU MET VAL GLN GLY MET SER PHE ILE VAL GLY SEQRES 23 A 451 SER THR GLU GLU GLU ALA ARG ARG LYS ALA GLU GLU GLN SEQRES 24 A 451 ASP GLN TYR LEU ASP VAL ASP ALA LEU ALA ALA ARG VAL SEQRES 25 A 451 SER ARG ASP LEU GLY VAL ASP LEU SER GLY ALA ASP ALA SEQRES 26 A 451 ASP GLN PRO LEU ASP THR ILE GLN THR GLU ALA THR GLN SEQRES 27 A 451 GLY ILE ALA LYS LEU MET MET GLU ALA VAL PRO ASP GLY SEQRES 28 A 451 ARG PRO LYS VAL LYS ASP LEU PRO LEU LEU TYR SER ILE SEQRES 29 A 451 ARG ILE VAL GLY THR PRO GLU THR ILE ALA ASP GLU LEU SEQRES 30 A 451 THR GLU TRP ARG ASP ALA GLY MET GLY GLY ILE ASN MET SEQRES 31 A 451 ALA ALA GLN MET LEU PRO GLY THR ASP ALA ASP PHE VAL SEQRES 32 A 451 ASP TYR VAL VAL PRO GLU LEU GLN ARG ARG GLY MET VAL SEQRES 33 A 451 GLN HIS GLU TYR ARG PRO GLY THR LEU ARG GLU LYS VAL SEQRES 34 A 451 PHE PRO GLY ARG ASP ARG LEU LEU ASN GLU ARG HIS PRO SEQRES 35 A 451 ALA SER ARG TYR ARG GLY ILE PHE SER SEQRES 1 B 451 MET ARG ASP THR LEU VAL LEU ASN ALA PHE HIS MET ASN SEQRES 2 B 451 THR VAL CYS HIS MET TYR ASP GLY GLY TRP ARG ASN PRO SEQRES 3 B 451 ALA ASP ARG GLN VAL GLU PHE ALA THR LEU GLU PHE TRP SEQRES 4 B 451 LYS GLU VAL ALA GLN THR LEU GLU ARG GLY PHE PHE ASP SEQRES 5 B 451 SER LEU PHE PHE ALA ASP VAL MET GLY THR ASP ALA ALA SEQRES 6 B 451 TYR GLY ASP SER TRP ASP ILE TYR ALA GLU GLN GLY ILE SEQRES 7 B 451 HIS PHE PRO MET HIS ASP ALA ALA SER LEU VAL ALA ALA SEQRES 8 B 451 LEU ILE PRO HIS THR GLU HIS LEU GLY LEU THR PHE SER SEQRES 9 B 451 SER SER VAL ILE GLN ASP HIS PRO PHE SER PHE ALA LYS SEQRES 10 B 451 ARG ALA SER THR LEU ASP HIS LEU SER GLY GLY ARG VAL SEQRES 11 B 451 GLY TRP ASN ILE VAL THR GLY GLY THR ILE ASN ALA SER SEQRES 12 B 451 GLN ASN PHE GLY TYR ASP SER LEU VAL PRO HIS ASP GLU SEQRES 13 B 451 ARG TYR ALA ILE GLY GLU GLU TYR MET GLU VAL VAL TYR SEQRES 14 B 451 LYS LEU TRP GLU GLY SER TRP ASP GLU GLY ALA LEU VAL SEQRES 15 B 451 ALA ASP LYS THR LYS GLY ILE TYR ALA ASP PRO SER LYS SEQRES 16 B 451 ILE HIS LYS ILE ASN HIS ARG GLY GLU ARG TYR ARG VAL SEQRES 17 B 451 ALA GLY PRO HIS LEU THR LEU PRO SER PRO GLN ARG THR SEQRES 18 B 451 PRO PHE LEU PHE GLN ALA GLY ALA SER THR ALA GLY ARG SEQRES 19 B 451 ALA PHE ALA SER ARG HIS ALA GLU ALA THR LEU VAL LEU SEQRES 20 B 451 CYS LEU THR PRO ASP SER MET ARG VAL ALA TYR LYS GLN SEQRES 21 B 451 MET GLN GLU LEU LEU ALA ALA ALA GLY ARG ALA SER ASP SEQRES 22 B 451 ASP LEU LEU MET VAL GLN GLY MET SER PHE ILE VAL GLY SEQRES 23 B 451 SER THR GLU GLU GLU ALA ARG ARG LYS ALA GLU GLU GLN SEQRES 24 B 451 ASP GLN TYR LEU ASP VAL ASP ALA LEU ALA ALA ARG VAL SEQRES 25 B 451 SER ARG ASP LEU GLY VAL ASP LEU SER GLY ALA ASP ALA SEQRES 26 B 451 ASP GLN PRO LEU ASP THR ILE GLN THR GLU ALA THR GLN SEQRES 27 B 451 GLY ILE ALA LYS LEU MET MET GLU ALA VAL PRO ASP GLY SEQRES 28 B 451 ARG PRO LYS VAL LYS ASP LEU PRO LEU LEU TYR SER ILE SEQRES 29 B 451 ARG ILE VAL GLY THR PRO GLU THR ILE ALA ASP GLU LEU SEQRES 30 B 451 THR GLU TRP ARG ASP ALA GLY MET GLY GLY ILE ASN MET SEQRES 31 B 451 ALA ALA GLN MET LEU PRO GLY THR ASP ALA ASP PHE VAL SEQRES 32 B 451 ASP TYR VAL VAL PRO GLU LEU GLN ARG ARG GLY MET VAL SEQRES 33 B 451 GLN HIS GLU TYR ARG PRO GLY THR LEU ARG GLU LYS VAL SEQRES 34 B 451 PHE PRO GLY ARG ASP ARG LEU LEU ASN GLU ARG HIS PRO SEQRES 35 B 451 ALA SER ARG TYR ARG GLY ILE PHE SER HET FMN A 501 31 HET FMN B 501 31 HETNAM FMN FLAVIN MONONUCLEOTIDE HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 3 FMN 2(C17 H21 N4 O9 P) FORMUL 5 HOH *7(H2 O) HELIX 1 AA1 ARG A 29 ALA A 34 5 6 HELIX 2 AA2 THR A 35 GLY A 49 1 15 HELIX 3 AA3 TRP A 70 GLN A 76 1 7 HELIX 4 AA4 ASP A 84 ILE A 93 1 10 HELIX 5 AA5 HIS A 111 GLY A 127 1 17 HELIX 6 AA6 THR A 139 ASN A 145 1 7 HELIX 7 AA7 ASP A 155 GLY A 174 1 20 HELIX 8 AA8 PRO A 193 ILE A 196 5 4 HELIX 9 AA9 SER A 230 ALA A 241 1 12 HELIX 10 AB1 THR A 250 GLY A 269 1 20 HELIX 11 AB2 THR A 288 GLN A 301 1 14 HELIX 12 AB3 ASP A 304 LEU A 316 1 13 HELIX 13 AB4 PRO A 328 ILE A 332 5 5 HELIX 14 AB5 THR A 334 MET A 344 1 11 HELIX 15 AB6 MET A 345 VAL A 348 5 4 HELIX 16 AB7 LYS A 354 TYR A 362 5 9 HELIX 17 AB8 THR A 369 ALA A 383 1 15 HELIX 18 AB9 PRO A 396 ARG A 413 1 18 HELIX 19 AC1 THR A 424 PHE A 430 1 7 HELIX 20 AC2 ALA A 443 ARG A 447 5 5 HELIX 21 AC3 GLY B 21 ASN B 25 5 5 HELIX 22 AC4 ARG B 29 PHE B 33 5 5 HELIX 23 AC5 THR B 35 GLY B 49 1 15 HELIX 24 AC6 TRP B 70 GLN B 76 1 7 HELIX 25 AC7 ASP B 84 ILE B 93 1 10 HELIX 26 AC8 HIS B 111 GLY B 127 1 17 HELIX 27 AC9 THR B 139 ASN B 145 1 7 HELIX 28 AD1 PRO B 153 GLY B 174 1 22 HELIX 29 AD2 PRO B 193 ILE B 196 5 4 HELIX 30 AD3 SER B 230 ALA B 241 1 12 HELIX 31 AD4 THR B 250 GLY B 269 1 20 HELIX 32 AD5 ALA B 271 LEU B 275 5 5 HELIX 33 AD6 THR B 288 GLN B 301 1 14 HELIX 34 AD7 ASP B 304 GLY B 317 1 14 HELIX 35 AD8 LEU B 358 TYR B 362 5 5 HELIX 36 AD9 THR B 369 ALA B 383 1 15 HELIX 37 AE1 PRO B 396 TYR B 405 1 10 HELIX 38 AE2 TYR B 405 ARG B 413 1 9 HELIX 39 AE3 THR B 424 PHE B 430 1 7 HELIX 40 AE4 ALA B 443 ARG B 447 5 5 SHEET 1 AA110 ILE A 364 GLY A 368 0 SHEET 2 AA110 LEU A 276 VAL A 285 1 N SER A 282 O ILE A 364 SHEET 3 AA110 GLY A 387 ALA A 391 1 O ASN A 389 N GLN A 279 SHEET 4 AA110 VAL A 6 MET A 12 1 N PHE A 10 O MET A 390 SHEET 5 AA110 SER A 53 ALA A 57 1 O ALA A 57 N HIS A 11 SHEET 6 AA110 GLY A 100 SER A 106 1 O THR A 102 N LEU A 54 SHEET 7 AA110 VAL A 130 VAL A 135 1 O ASN A 133 N PHE A 103 SHEET 8 AA110 PHE A 223 GLN A 226 1 O PHE A 223 N TRP A 132 SHEET 9 AA110 ALA A 243 VAL A 246 1 N ALA A 243 O LEU A 224 SHEET 10 AA110 LEU A 276 VAL A 285 1 O VAL A 278 N VAL A 246 SHEET 1 AA2 2 LEU A 181 ASP A 184 0 SHEET 2 AA2 2 ILE A 189 ALA A 191 -1 O TYR A 190 N VAL A 182 SHEET 1 AA3 2 HIS A 201 ARG A 202 0 SHEET 2 AA3 2 ARG A 207 VAL A 208 -1 O VAL A 208 N HIS A 201 SHEET 1 AA410 ILE B 364 GLY B 368 0 SHEET 2 AA410 LEU B 276 VAL B 285 1 N SER B 282 O ILE B 366 SHEET 3 AA410 GLY B 387 ALA B 391 1 O ASN B 389 N GLN B 279 SHEET 4 AA410 VAL B 6 MET B 12 1 N ASN B 8 O MET B 390 SHEET 5 AA410 SER B 53 ALA B 57 1 O SER B 53 N LEU B 7 SHEET 6 AA410 GLY B 100 SER B 106 1 O THR B 102 N LEU B 54 SHEET 7 AA410 VAL B 130 VAL B 135 1 O ASN B 133 N PHE B 103 SHEET 8 AA410 PHE B 223 GLN B 226 1 O PHE B 223 N TRP B 132 SHEET 9 AA410 ALA B 243 VAL B 246 1 O LEU B 245 N GLN B 226 SHEET 10 AA410 LEU B 276 VAL B 285 1 O LEU B 276 N THR B 244 SHEET 1 AA5 2 LEU B 181 ASP B 184 0 SHEET 2 AA5 2 ILE B 189 ALA B 191 -1 O TYR B 190 N VAL B 182 SHEET 1 AA6 2 HIS B 201 ARG B 202 0 SHEET 2 AA6 2 ARG B 207 VAL B 208 -1 O VAL B 208 N HIS B 201 CISPEP 1 PHE A 80 PRO A 81 0 -0.34 CISPEP 2 GLY A 210 PRO A 211 0 -3.40 CISPEP 3 LEU A 395 PRO A 396 0 5.71 CISPEP 4 PHE B 80 PRO B 81 0 21.97 CISPEP 5 GLY B 210 PRO B 211 0 -4.54 CISPEP 6 LEU B 395 PRO B 396 0 0.09 SITE 1 AC1 12 ALA A 57 ASP A 58 SER A 104 VAL A 135 SITE 2 AC1 12 HIS A 154 TYR A 158 ALA A 227 ALA A 229 SITE 3 AC1 12 SER A 230 GLY A 233 LEU A 245 ASN A 389 SITE 1 AC2 12 PHE B 10 ALA B 57 ASP B 58 SER B 104 SITE 2 AC2 12 VAL B 135 HIS B 154 TYR B 158 ALA B 227 SITE 3 AC2 12 ALA B 229 SER B 230 GLY B 233 LEU B 245 CRYST1 112.235 139.534 170.215 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008910 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007167 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005875 0.00000