HEADER LYASE 15-JAN-20 6LR8 TITLE MUTANT L331A OF DEGLYCOSYLATED HYDROXYNITRILE LYASE ISOZYME 5 FROM TITLE 2 PRUNUS COMMUNIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PREDICTED: (R)-MANDELONITRILE LYASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PRUNUS DULCIS; SOURCE 3 ORGANISM_COMMON: ALMOND; SOURCE 4 ORGANISM_TAXID: 3755; SOURCE 5 GENE: ALMOND_2B028509; SOURCE 6 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: X33; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PPICZ KEYWDS FAD-DEPENDENT HYDROXYNITRILE LYASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.-C.ZHENG,J.-H.XU REVDAT 3 29-NOV-23 6LR8 1 HETSYN REVDAT 2 29-JUL-20 6LR8 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE ATOM REVDAT 1 13-MAY-20 6LR8 0 JRNL AUTH Y.C.ZHENG,F.L.LI,Z.M.LIN,G.Q.LIN,R.HONG,H.L.YU,J.H.XU JRNL TITL STRUCTURE-GUIDED TUNING OF A HYDROXYNITRILE LYASE TO ACCEPT JRNL TITL 2 RIGID PHARMACO ALDEHYDES. JRNL REF ACS CATALYSIS 2020 JRNL REFN ESSN 2155-5435 JRNL DOI 10.1021/ACSCATAL.0C01103 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.31 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 78405 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.174 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 4002 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.3130 - 4.8978 0.99 2783 168 0.1772 0.2292 REMARK 3 2 4.8978 - 3.8885 1.00 2672 170 0.1262 0.1452 REMARK 3 3 3.8885 - 3.3972 0.99 2657 149 0.1403 0.1613 REMARK 3 4 3.3972 - 3.0867 1.00 2629 147 0.1553 0.1627 REMARK 3 5 3.0867 - 2.8655 1.00 2619 144 0.1610 0.1639 REMARK 3 6 2.8655 - 2.6966 1.00 2653 115 0.1627 0.1709 REMARK 3 7 2.6966 - 2.5616 1.00 2609 155 0.0000 0.0000 REMARK 3 8 2.5616 - 2.4501 1.00 2608 137 0.1540 0.1847 REMARK 3 9 2.4501 - 2.3558 0.99 2576 136 0.1523 0.1671 REMARK 3 10 2.3558 - 2.2745 0.99 2610 133 0.1502 0.2047 REMARK 3 11 2.2745 - 2.2034 0.99 2598 132 0.1505 0.1673 REMARK 3 12 2.2034 - 2.1404 1.00 2575 139 0.1467 0.1592 REMARK 3 13 2.1404 - 2.0841 0.99 2606 123 0.1461 0.1927 REMARK 3 14 2.0841 - 2.0332 0.99 2568 146 0.1500 0.1835 REMARK 3 15 2.0332 - 1.9870 1.00 2555 150 0.1526 0.1733 REMARK 3 16 1.9870 - 1.9447 0.99 2579 142 0.1540 0.1712 REMARK 3 17 1.9447 - 1.9058 0.99 2581 132 0.1563 0.1961 REMARK 3 18 1.9058 - 1.8698 0.98 2561 129 0.1565 0.1628 REMARK 3 19 1.8698 - 1.8364 0.99 2538 132 0.0000 0.0000 REMARK 3 20 1.8364 - 1.8053 0.98 2564 138 0.1581 0.2041 REMARK 3 21 1.8053 - 1.7762 0.99 2536 122 0.1532 0.1907 REMARK 3 22 1.7762 - 1.7489 0.97 2522 139 0.1515 0.1726 REMARK 3 23 1.7489 - 1.7231 0.98 2544 113 0.1544 0.1844 REMARK 3 24 1.7231 - 1.6989 0.97 2544 121 0.1567 0.1804 REMARK 3 25 1.6989 - 1.6759 0.97 2491 149 0.1579 0.1799 REMARK 3 26 1.6759 - 1.6541 0.99 2490 138 0.1559 0.1851 REMARK 3 27 1.6541 - 1.6335 0.96 2532 142 0.1571 0.1989 REMARK 3 28 1.6335 - 1.6138 0.97 2471 150 0.1525 0.1880 REMARK 3 29 1.6138 - 1.5950 0.84 2132 111 0.1549 0.1636 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.100 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.040 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4266 REMARK 3 ANGLE : 0.920 5845 REMARK 3 CHIRALITY : 0.055 674 REMARK 3 PLANARITY : 0.006 749 REMARK 3 DIHEDRAL : 7.879 2444 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6LR8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1300015323. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JAN-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.25-8.75 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9789 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 78549 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.595 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 12.10 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 12.40 REMARK 200 R MERGE FOR SHELL (I) : 0.39300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 6JBY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS-BICINE, 100 MM, PH 8.25; CACL2, REMARK 280 60 MM; MGCL2, 60 MM; PEG 500MME, 24%, V/V; PEG 20000, 12%, W/V, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.77650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.46200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.58100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.46200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.77650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.58100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 225 REMARK 465 THR A 226 REMARK 465 SER A 227 REMARK 465 GLU A 439 REMARK 465 ASN A 440 REMARK 465 GLN A 441 REMARK 465 THR A 442 REMARK 465 ILE A 520 REMARK 465 ARG A 521 REMARK 465 LEU A 522 REMARK 465 GLU A 523 REMARK 465 ALA A 524 REMARK 465 ILE A 525 REMARK 465 HIS A 526 REMARK 465 ASN A 527 REMARK 465 ILE A 528 REMARK 465 GLN A 529 REMARK 465 GLU A 530 REMARK 465 SER A 531 REMARK 465 MET A 532 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 730 O HOH A 747 1.58 REMARK 500 O HOH A 1233 O HOH A 1278 1.82 REMARK 500 ND2 ASN A 191 O HOH A 701 1.91 REMARK 500 OD2 ASP A 443 O HOH A 702 1.91 REMARK 500 O HOH A 974 O HOH A 1043 1.95 REMARK 500 OD1 ASP A 143 O HOH A 703 1.96 REMARK 500 O HOH A 1048 O HOH A 1198 1.99 REMARK 500 O HOH A 1085 O HOH A 1152 2.01 REMARK 500 O HOH A 915 O HOH A 1412 2.04 REMARK 500 O HOH A 1009 O HOH A 1359 2.04 REMARK 500 O HOH A 865 O HOH A 1187 2.05 REMARK 500 ND2 ASN A 353 O HOH A 704 2.05 REMARK 500 O HOH A 704 O HOH A 1291 2.05 REMARK 500 O HOH A 790 O HOH A 1067 2.07 REMARK 500 O HOH A 1415 O HOH A 1422 2.08 REMARK 500 O HOH A 1200 O HOH A 1334 2.08 REMARK 500 O HOH A 1199 O HOH A 1233 2.09 REMARK 500 O HOH A 1234 O HOH A 1296 2.11 REMARK 500 O HOH A 1373 O HOH A 1374 2.12 REMARK 500 O HOH A 1229 O HOH A 1255 2.13 REMARK 500 OE2 GLU A 275 O HOH A 705 2.16 REMARK 500 O HOH A 1199 O HOH A 1325 2.16 REMARK 500 OD2 ASP A 473 O HOH A 706 2.18 REMARK 500 O HOH A 1271 O HOH A 1285 2.18 REMARK 500 O HOH A 727 O HOH A 1161 2.18 REMARK 500 O HOH A 1015 O HOH A 1265 2.18 REMARK 500 O HOH A 1206 O HOH A 1247 2.19 REMARK 500 O HOH A 801 O HOH A 1364 2.19 REMARK 500 O HOH A 1015 O HOH A 1383 2.19 REMARK 500 O HOH A 1227 O HOH A 1286 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1240 O HOH A 1350 3654 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 342 -6.94 80.18 REMARK 500 HIS A 460 42.72 -101.50 REMARK 500 SER A 465 57.17 -144.40 REMARK 500 LYS A 469 -52.85 -124.30 REMARK 500 ASP A 487 -168.71 175.35 REMARK 500 ASN A 496 -169.68 178.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1458 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A1459 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH A1460 DISTANCE = 7.02 ANGSTROMS REMARK 999 REMARK 999 SEQUENCE REMARK 999 M532 IS MAYBE A NATURAL MUTAGENESIS OF THE AOA5E4GBK6 SINCE AUTHORS REMARK 999 HAVE CONFIRMED THAT THE INITIAL SEQUENCE WHICH WAS AMPLIFIED BY PCR REMARK 999 REACTION FROM THE CDNA LIBRARY OF THE PRUNUS COMMUNIS. DBREF1 6LR8 A 1 532 UNP A0A5E4GBK6_PRUDU DBREF2 6LR8 A A0A5E4GBK6 28 559 SEQADV 6LR8 HIS A -5 UNP A0A5E4GBK EXPRESSION TAG SEQADV 6LR8 HIS A -4 UNP A0A5E4GBK EXPRESSION TAG SEQADV 6LR8 HIS A -3 UNP A0A5E4GBK EXPRESSION TAG SEQADV 6LR8 HIS A -2 UNP A0A5E4GBK EXPRESSION TAG SEQADV 6LR8 HIS A -1 UNP A0A5E4GBK EXPRESSION TAG SEQADV 6LR8 HIS A 0 UNP A0A5E4GBK EXPRESSION TAG SEQADV 6LR8 ALA A 331 UNP A0A5E4GBK LEU 358 ENGINEERED MUTATION SEQADV 6LR8 MET A 532 UNP A0A5E4GBK GLN 559 CONFLICT SEQRES 1 A 538 HIS HIS HIS HIS HIS HIS LEU ALA ASN THR SER ALA HIS SEQRES 2 A 538 ASP PHE SER TYR LEU LYS PHE VAL TYR ASN ALA THR ASP SEQRES 3 A 538 THR SER LEU GLU GLY SER TYR ASP TYR ILE VAL ILE GLY SEQRES 4 A 538 GLY GLY THR SER GLY CYS PRO LEU ALA ALA THR LEU SER SEQRES 5 A 538 GLU LYS TYR LYS VAL LEU LEU LEU GLU ARG GLY THR ILE SEQRES 6 A 538 ALA THR GLU TYR PRO ASN THR LEU THR ALA ASP GLY PHE SEQRES 7 A 538 ALA TYR ASN LEU GLN GLN GLN ASP ASP GLY LYS THR PRO SEQRES 8 A 538 VAL GLU ARG PHE VAL SER GLU ASP GLY ILE ASP ASN VAL SEQRES 9 A 538 ARG ALA ARG ILE LEU GLY GLY THR THR ILE ILE ASN ALA SEQRES 10 A 538 GLY VAL TYR ALA ARG ALA ASN ILE SER PHE TYR SER GLN SEQRES 11 A 538 THR GLY ILE GLU TRP ASP LEU ASP LEU VAL ASN LYS THR SEQRES 12 A 538 TYR GLU TRP VAL GLU ASP ALA ILE VAL VAL LYS PRO ASN SEQRES 13 A 538 ASN GLN SER TRP GLN SER VAL ILE GLY GLU GLY PHE LEU SEQRES 14 A 538 GLU ALA GLY ILE LEU PRO ASP ASN GLY PHE SER LEU ASP SEQRES 15 A 538 HIS GLU ALA GLY THR ARG LEU THR GLY SER THR PHE ASP SEQRES 16 A 538 ASN ASN GLY THR ARG HIS ALA ALA ASP GLU LEU LEU ASN SEQRES 17 A 538 LYS GLY ASP PRO ASN ASN LEU LEU VAL ALA VAL GLN ALA SEQRES 18 A 538 SER VAL GLU LYS ILE LEU PHE SER SER ASN THR SER ASN SEQRES 19 A 538 LEU SER ALA ILE GLY VAL ILE TYR THR ASP SER ASP GLY SEQRES 20 A 538 ASN SER HIS GLN ALA PHE VAL ARG GLY ASN GLY GLU VAL SEQRES 21 A 538 ILE VAL SER ALA GLY THR ILE GLY THR PRO GLN LEU LEU SEQRES 22 A 538 LEU LEU SER GLY VAL GLY PRO GLU SER TYR LEU SER SER SEQRES 23 A 538 LEU ASN ILE THR VAL VAL GLN PRO ASN PRO TYR VAL GLY SEQRES 24 A 538 GLN PHE VAL TYR ASP ASN PRO ARG ASN PHE ILE ASN ILE SEQRES 25 A 538 LEU PRO PRO ASN PRO ILE GLU ALA SER VAL VAL THR VAL SEQRES 26 A 538 LEU GLY ILE ARG SER ASP TYR TYR GLN VAL SER ALA SER SEQRES 27 A 538 SER LEU PRO PHE SER THR PRO PRO PHE SER LEU PHE PRO SEQRES 28 A 538 THR THR SER TYR PRO LEU PRO ASN SER THR PHE ALA HIS SEQRES 29 A 538 ILE VAL SER GLN VAL PRO GLY PRO LEU SER HIS GLY SER SEQRES 30 A 538 VAL THR LEU ASN SER SER SER ASP VAL ARG ILE ALA PRO SEQRES 31 A 538 ASN ILE LYS PHE ASN TYR TYR SER ASN SER THR ASP LEU SEQRES 32 A 538 ALA ASN CYS VAL SER GLY MET LYS LYS LEU GLY ASP LEU SEQRES 33 A 538 LEU ARG THR LYS ALA LEU GLU PRO TYR LYS ALA ARG ASP SEQRES 34 A 538 VAL LEU GLY ILE ASP GLY PHE ASN TYR LEU GLY VAL PRO SEQRES 35 A 538 LEU PRO GLU ASN GLN THR ASP ASP ALA SER PHE GLU THR SEQRES 36 A 538 PHE CYS LEU ASP ASN VAL ALA SER TYR TRP HIS TYR HIS SEQRES 37 A 538 GLY GLY SER LEU VAL GLY LYS VAL LEU ASP ASP SER PHE SEQRES 38 A 538 ARG VAL MET GLY ILE LYS ALA LEU ARG VAL VAL ASP ALA SEQRES 39 A 538 SER THR PHE PRO TYR GLU PRO ASN SER HIS PRO GLN GLY SEQRES 40 A 538 PHE TYR LEU MET LEU GLY ARG TYR VAL GLY LEU GLN ILE SEQRES 41 A 538 LEU GLN GLU ARG SER ILE ARG LEU GLU ALA ILE HIS ASN SEQRES 42 A 538 ILE GLN GLU SER MET HET NAG B 1 14 HET NAG B 2 14 HET NAG A 601 14 HET NAG A 602 14 HET NAG A 603 14 HET NAG A 604 14 HET NAG A 607 14 HET NAG A 608 14 HET FAD A 609 53 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG 8(C8 H15 N O6) FORMUL 9 FAD C27 H33 N9 O15 P2 FORMUL 10 HOH *760(H2 O) HELIX 1 AA1 HIS A -5 HIS A -1 5 5 HELIX 2 AA2 PHE A 9 LYS A 13 5 5 HELIX 3 AA3 ASP A 20 GLU A 24 5 5 HELIX 4 AA4 SER A 37 SER A 46 1 10 HELIX 5 AA5 ILE A 59 ASP A 70 5 12 HELIX 6 AA6 GLY A 71 GLN A 78 1 8 HELIX 7 AA7 GLY A 104 ILE A 109 5 6 HELIX 8 AA8 SER A 120 GLY A 126 1 7 HELIX 9 AA9 ASP A 130 VAL A 146 1 17 HELIX 10 AB1 GLN A 152 ALA A 165 1 14 HELIX 11 AB2 ALA A 196 GLY A 204 5 9 HELIX 12 AB3 ALA A 258 SER A 270 1 13 HELIX 13 AB4 PRO A 274 LEU A 281 1 8 HELIX 14 AB5 ASN A 393 ARG A 412 1 20 HELIX 15 AB6 LEU A 416 LYS A 420 5 5 HELIX 16 AB7 GLY A 426 PHE A 430 5 5 HELIX 17 AB8 ASP A 444 ASN A 454 1 11 HELIX 18 AB9 ASP A 487 PHE A 491 5 5 HELIX 19 AC1 PRO A 499 SER A 519 1 21 SHEET 1 AA1 7 VAL A 15 ASN A 17 0 SHEET 2 AA1 7 LEU A 209 VAL A 213 1 O VAL A 211 N TYR A 16 SHEET 3 AA1 7 VAL A 51 GLU A 55 1 N LEU A 53 O ALA A 212 SHEET 4 AA1 7 GLY A 25 ILE A 32 1 N VAL A 31 O LEU A 54 SHEET 5 AA1 7 SER A 243 VAL A 256 1 O ILE A 255 N ILE A 30 SHEET 6 AA1 7 ALA A 231 THR A 237 -1 N VAL A 234 O ALA A 246 SHEET 7 AA1 7 SER A 216 PHE A 222 -1 N LEU A 221 O GLY A 233 SHEET 1 AA2 6 VAL A 15 ASN A 17 0 SHEET 2 AA2 6 LEU A 209 VAL A 213 1 O VAL A 211 N TYR A 16 SHEET 3 AA2 6 VAL A 51 GLU A 55 1 N LEU A 53 O ALA A 212 SHEET 4 AA2 6 GLY A 25 ILE A 32 1 N VAL A 31 O LEU A 54 SHEET 5 AA2 6 SER A 243 VAL A 256 1 O ILE A 255 N ILE A 30 SHEET 6 AA2 6 LEU A 483 VAL A 485 1 O ARG A 484 N VAL A 256 SHEET 1 AA3 2 VAL A 86 VAL A 90 0 SHEET 2 AA3 2 ASP A 96 ALA A 100 -1 O ARG A 99 N GLU A 87 SHEET 1 AA4 2 VAL A 113 TYR A 114 0 SHEET 2 AA4 2 GLY A 185 SER A 186 -1 O GLY A 185 N TYR A 114 SHEET 1 AA5 7 ASP A 170 PHE A 173 0 SHEET 2 AA5 7 GLY A 180 LEU A 183 1 O THR A 181 N ASN A 171 SHEET 3 AA5 7 VAL A 319 ARG A 323 -1 O ILE A 322 N GLY A 180 SHEET 4 AA5 7 TYR A 326 SER A 333 -1 O GLN A 328 N GLY A 321 SHEET 5 AA5 7 PHE A 356 GLN A 362 -1 O HIS A 358 N ALA A 331 SHEET 6 AA5 7 PRO A 300 ILE A 306 -1 N ILE A 304 O ILE A 359 SHEET 7 AA5 7 TYR A 432 LEU A 433 -1 O LEU A 433 N ASN A 305 SHEET 1 AA6 7 ASP A 170 PHE A 173 0 SHEET 2 AA6 7 GLY A 180 LEU A 183 1 O THR A 181 N ASN A 171 SHEET 3 AA6 7 VAL A 319 ARG A 323 -1 O ILE A 322 N GLY A 180 SHEET 4 AA6 7 TYR A 326 SER A 333 -1 O GLN A 328 N GLY A 321 SHEET 5 AA6 7 PHE A 356 GLN A 362 -1 O HIS A 358 N ALA A 331 SHEET 6 AA6 7 PRO A 300 ILE A 306 -1 N ILE A 304 O ILE A 359 SHEET 7 AA6 7 ALA A 456 SER A 457 -1 O ALA A 456 N ARG A 301 SHEET 1 AA7 2 VAL A 272 GLY A 273 0 SHEET 2 AA7 2 GLN A 287 PRO A 288 1 O GLN A 287 N GLY A 273 SHEET 1 AA8 4 ASN A 385 LYS A 387 0 SHEET 2 AA8 4 GLY A 370 THR A 373 -1 N THR A 373 O ASN A 385 SHEET 3 AA8 4 GLN A 294 TYR A 297 -1 N VAL A 296 O GLY A 370 SHEET 4 AA8 4 HIS A 462 GLY A 463 -1 O HIS A 462 N TYR A 297 SSBOND 1 CYS A 400 CYS A 451 1555 1555 2.05 LINK ND2 ASN A 3 C1 NAG A 608 1555 1555 1.44 LINK ND2 ASN A 17 C1 NAG A 604 1555 1555 1.44 LINK ND2 ASN A 118 C1 NAG B 1 1555 1555 1.44 LINK ND2 ASN A 135 C1 NAG A 603 1555 1555 1.44 LINK ND2 ASN A 282 C1 NAG A 601 1555 1555 1.44 LINK ND2 ASN A 375 C1 NAG A 607 1555 1555 1.44 LINK ND2 ASN A 393 C1 NAG A 602 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 CISPEP 1 LEU A 168 PRO A 169 0 -0.36 CISPEP 2 GLY A 365 PRO A 366 0 -11.10 CRYST1 49.553 91.162 130.924 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020180 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010969 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007638 0.00000