HEADER TRANSCRIPTION 17-JAN-20 6LS6 TITLE CRYSTAL STRUCTURE OF YEATS DOMAIN OF AF9 IN COMPLEX WITH H3K9BZ TITLE 2 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN AF-9; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: YEATS DOMAIN OF AF9; COMPND 5 SYNONYM: ALL1-FUSED GENE FROM CHROMOSOME 9 PROTEIN,MYELOID/LYMPHOID COMPND 6 OR MIXED-LINEAGE LEUKEMIA TRANSLOCATED TO CHROMOSOME 3 PROTEIN,YEATS COMPND 7 DOMAIN-CONTAINING PROTEIN 3; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: 2; COMPND 11 CHAIN: C, D; COMPND 12 FRAGMENT: HISTONE H3 PEPTIDE; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MLLT3, AF9, YEATS3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28B; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_TAXID: 9606 KEYWDS YEATS DOMAIN, HISTONE KBZ MODIFICATION, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR H.T.LI,X.L.REN REVDAT 4 29-NOV-23 6LS6 1 LINK REVDAT 3 27-JAN-21 6LS6 1 JRNL REVDAT 2 23-DEC-20 6LS6 1 JRNL REVDAT 1 18-NOV-20 6LS6 0 JRNL AUTH X.REN,Y.ZHOU,Z.XUE,N.HAO,Y.LI,X.GUO,D.WANG,X.SHI,H.LI JRNL TITL HISTONE BENZOYLATION SERVES AS AN EPIGENETIC MARK FOR DPF JRNL TITL 2 AND YEATS FAMILY PROTEINS. JRNL REF NUCLEIC ACIDS RES. V. 49 114 2021 JRNL REFN ESSN 1362-4962 JRNL PMID 33290558 JRNL DOI 10.1093/NAR/GKAA1130 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14RC3_3206 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 16874 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.230 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.340 REMARK 3 FREE R VALUE TEST SET COUNT : 1238 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.8240 - 4.5657 0.96 1794 142 0.1975 0.2223 REMARK 3 2 4.5657 - 3.6244 0.95 1752 137 0.1815 0.2074 REMARK 3 3 3.6244 - 3.1664 0.95 1719 138 0.2123 0.2712 REMARK 3 4 3.1664 - 2.8770 0.97 1750 138 0.2456 0.2974 REMARK 3 5 2.8770 - 2.6708 0.99 1765 151 0.2789 0.3230 REMARK 3 6 2.6708 - 2.5133 0.98 1754 139 0.2784 0.3608 REMARK 3 7 2.5133 - 2.3875 0.94 1707 115 0.2960 0.3955 REMARK 3 8 2.3875 - 2.2835 0.97 1742 137 0.3168 0.3860 REMARK 3 9 2.2835 - 2.2000 0.93 1653 141 0.3185 0.3581 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 36.430 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.5363 7.3429 28.2729 REMARK 3 T TENSOR REMARK 3 T11: 0.5181 T22: 0.4095 REMARK 3 T33: 0.3727 T12: 0.0634 REMARK 3 T13: -0.0256 T23: -0.0107 REMARK 3 L TENSOR REMARK 3 L11: 0.6386 L22: 0.1905 REMARK 3 L33: 0.3190 L12: -0.2572 REMARK 3 L13: -0.2932 L23: -0.0190 REMARK 3 S TENSOR REMARK 3 S11: -0.1649 S12: -0.2411 S13: 0.1566 REMARK 3 S21: 0.1313 S22: 0.2201 S23: -0.1772 REMARK 3 S31: -0.4411 S32: -0.4160 S33: -0.0003 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 23 THROUGH 50 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.7126 -0.6296 42.8405 REMARK 3 T TENSOR REMARK 3 T11: 0.6171 T22: 0.3104 REMARK 3 T33: 0.3260 T12: 0.0512 REMARK 3 T13: -0.0002 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.6136 L22: 0.4758 REMARK 3 L33: 0.3911 L12: 0.4934 REMARK 3 L13: -0.4181 L23: -0.3606 REMARK 3 S TENSOR REMARK 3 S11: -0.3917 S12: -0.2018 S13: -0.0792 REMARK 3 S21: 0.9709 S22: 0.2637 S23: 0.0164 REMARK 3 S31: -0.6328 S32: -0.1867 S33: -0.0005 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 51 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.3388 -5.2352 35.4116 REMARK 3 T TENSOR REMARK 3 T11: 0.3439 T22: 0.2669 REMARK 3 T33: 0.3544 T12: 0.0067 REMARK 3 T13: -0.0199 T23: -0.0160 REMARK 3 L TENSOR REMARK 3 L11: 0.8605 L22: 1.3144 REMARK 3 L33: 0.7884 L12: 0.2744 REMARK 3 L13: -0.4725 L23: 0.2844 REMARK 3 S TENSOR REMARK 3 S11: 0.1245 S12: 0.0978 S13: -0.0194 REMARK 3 S21: -0.1240 S22: -0.1146 S23: 0.1916 REMARK 3 S31: 0.2921 S32: -0.2551 S33: -0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 100 THROUGH 141 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.6139 3.5940 29.8079 REMARK 3 T TENSOR REMARK 3 T11: 0.3497 T22: 0.3113 REMARK 3 T33: 0.3522 T12: 0.0524 REMARK 3 T13: 0.0363 T23: 0.0235 REMARK 3 L TENSOR REMARK 3 L11: 0.2763 L22: 1.0026 REMARK 3 L33: 0.7497 L12: -0.0949 REMARK 3 L13: -0.4448 L23: 0.4050 REMARK 3 S TENSOR REMARK 3 S11: -0.0387 S12: 0.4226 S13: 0.0764 REMARK 3 S21: -0.0795 S22: -0.0214 S23: -0.0912 REMARK 3 S31: -0.2578 S32: 0.1346 S33: -0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 4 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.9752 -20.6849 -3.7423 REMARK 3 T TENSOR REMARK 3 T11: 0.6330 T22: 0.6564 REMARK 3 T33: 0.4859 T12: -0.0235 REMARK 3 T13: 0.0079 T23: -0.1071 REMARK 3 L TENSOR REMARK 3 L11: 0.1520 L22: 0.2432 REMARK 3 L33: 0.6201 L12: -0.1873 REMARK 3 L13: 0.0243 L23: 0.0422 REMARK 3 S TENSOR REMARK 3 S11: -0.1947 S12: 0.2090 S13: 0.0463 REMARK 3 S21: -0.0483 S22: 0.2097 S23: 0.0822 REMARK 3 S31: 0.9059 S32: 0.2769 S33: 0.0121 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 23 THROUGH 44 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.2850 -11.5678 14.4836 REMARK 3 T TENSOR REMARK 3 T11: 0.3552 T22: 0.5583 REMARK 3 T33: 0.4427 T12: 0.1295 REMARK 3 T13: -0.0145 T23: -0.1823 REMARK 3 L TENSOR REMARK 3 L11: 0.9297 L22: 0.6024 REMARK 3 L33: 0.4769 L12: 0.2167 REMARK 3 L13: -0.3188 L23: -0.5274 REMARK 3 S TENSOR REMARK 3 S11: 0.1808 S12: 0.1597 S13: 0.2275 REMARK 3 S21: 0.2158 S22: -0.1597 S23: -0.1832 REMARK 3 S31: -0.0779 S32: 0.2611 S33: -0.0368 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 45 THROUGH 92 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.6981 -7.3455 2.4846 REMARK 3 T TENSOR REMARK 3 T11: 0.4097 T22: 0.5952 REMARK 3 T33: 0.3907 T12: 0.0309 REMARK 3 T13: 0.0406 T23: -0.1159 REMARK 3 L TENSOR REMARK 3 L11: 0.8828 L22: 0.6659 REMARK 3 L33: 0.4570 L12: 0.4098 REMARK 3 L13: -0.1390 L23: 0.4125 REMARK 3 S TENSOR REMARK 3 S11: 0.0328 S12: 0.2334 S13: 0.1900 REMARK 3 S21: -0.2091 S22: 0.3518 S23: -0.1241 REMARK 3 S31: -0.4724 S32: 0.2388 S33: 0.0005 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 93 THROUGH 116 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.5022 -12.2493 4.2378 REMARK 3 T TENSOR REMARK 3 T11: 0.6237 T22: 0.5368 REMARK 3 T33: 0.4351 T12: 0.0767 REMARK 3 T13: -0.0890 T23: -0.0944 REMARK 3 L TENSOR REMARK 3 L11: 0.2284 L22: 1.1499 REMARK 3 L33: 0.2361 L12: 0.2957 REMARK 3 L13: -0.1657 L23: -0.0054 REMARK 3 S TENSOR REMARK 3 S11: -0.0983 S12: 0.0455 S13: -0.0842 REMARK 3 S21: -0.2395 S22: 0.0492 S23: -0.0671 REMARK 3 S31: 0.4804 S32: -0.7407 S33: 0.0016 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 117 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.2517 -20.1790 0.0993 REMARK 3 T TENSOR REMARK 3 T11: 0.8003 T22: 0.6594 REMARK 3 T33: 0.4741 T12: -0.1083 REMARK 3 T13: 0.0041 T23: -0.0985 REMARK 3 L TENSOR REMARK 3 L11: 0.0016 L22: 0.0045 REMARK 3 L33: 0.0542 L12: -0.0079 REMARK 3 L13: 0.0302 L23: -0.0170 REMARK 3 S TENSOR REMARK 3 S11: -0.3984 S12: 0.1617 S13: -0.1715 REMARK 3 S21: -0.0181 S22: 0.3509 S23: -0.0261 REMARK 3 S31: 0.5814 S32: -0.5672 S33: 0.0001 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 129 THROUGH 141 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.0347 -19.1763 -18.4964 REMARK 3 T TENSOR REMARK 3 T11: 0.6872 T22: 0.7101 REMARK 3 T33: 0.4940 T12: -0.1271 REMARK 3 T13: -0.0097 T23: -0.1763 REMARK 3 L TENSOR REMARK 3 L11: 0.1501 L22: 0.2320 REMARK 3 L33: 0.0862 L12: -0.0586 REMARK 3 L13: -0.0928 L23: -0.0453 REMARK 3 S TENSOR REMARK 3 S11: -0.0568 S12: 0.5903 S13: -0.2600 REMARK 3 S21: -1.0157 S22: 0.5427 S23: -0.2058 REMARK 3 S31: 0.7119 S32: 0.4711 S33: 0.0018 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 3 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.3647 -9.0222 19.6854 REMARK 3 T TENSOR REMARK 3 T11: 0.6209 T22: 0.5001 REMARK 3 T33: 0.4912 T12: 0.0756 REMARK 3 T13: -0.0542 T23: -0.0397 REMARK 3 L TENSOR REMARK 3 L11: 0.2037 L22: 0.2428 REMARK 3 L33: 0.2049 L12: -0.0167 REMARK 3 L13: 0.0871 L23: -0.2173 REMARK 3 S TENSOR REMARK 3 S11: -0.0492 S12: -0.2682 S13: -0.0582 REMARK 3 S21: 0.1142 S22: 0.2493 S23: -0.0496 REMARK 3 S31: -0.3186 S32: -0.6087 S33: 0.0015 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 3 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.9505 -12.1000 37.0388 REMARK 3 T TENSOR REMARK 3 T11: 0.1911 T22: 0.4371 REMARK 3 T33: 0.6415 T12: 0.0333 REMARK 3 T13: -0.0529 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 0.3115 L22: 1.0618 REMARK 3 L33: 0.8764 L12: -0.0477 REMARK 3 L13: -0.3174 L23: -0.7138 REMARK 3 S TENSOR REMARK 3 S11: -0.2179 S12: 0.1600 S13: -0.0578 REMARK 3 S21: 0.0944 S22: -0.1734 S23: -0.4189 REMARK 3 S31: -0.1728 S32: 0.0367 S33: -0.4668 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6LS6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1300015370. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16939 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.196 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.13900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.42200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4TMP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS, PH 5.5??200 MM LITHIUM REMARK 280 SULFATE, 25% W/V PEG 3350., VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 45.12900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.11800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 45.12900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 21.11800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 HIS A 3 REMARK 465 GLY B 1 REMARK 465 SER B 2 REMARK 465 HIS B 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O LEU A 138 OG SER B 6 2565 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS D 4 C - N - CA ANGL. DEV. = -18.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA B 5 -16.44 -157.18 REMARK 500 GLU B 96 -164.46 -110.09 REMARK 500 THR C 6 -178.80 -69.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 THR D 3 -15.90 REMARK 500 REMARK 500 REMARK: NULL DBREF 6LS6 A 4 141 UNP P42568 AF9_HUMAN 1 138 DBREF 6LS6 B 4 141 UNP P42568 AF9_HUMAN 1 138 DBREF 6LS6 C 3 10 PDB 6LS6 6LS6 3 10 DBREF 6LS6 D 3 10 PDB 6LS6 6LS6 3 10 SEQADV 6LS6 GLY A 1 UNP P42568 EXPRESSION TAG SEQADV 6LS6 SER A 2 UNP P42568 EXPRESSION TAG SEQADV 6LS6 HIS A 3 UNP P42568 EXPRESSION TAG SEQADV 6LS6 GLY B 1 UNP P42568 EXPRESSION TAG SEQADV 6LS6 SER B 2 UNP P42568 EXPRESSION TAG SEQADV 6LS6 HIS B 3 UNP P42568 EXPRESSION TAG SEQRES 1 A 141 GLY SER HIS MET ALA SER SER CYS ALA VAL GLN VAL LYS SEQRES 2 A 141 LEU GLU LEU GLY HIS ARG ALA GLN VAL ARG LYS LYS PRO SEQRES 3 A 141 THR VAL GLU GLY PHE THR HIS ASP TRP MET VAL PHE VAL SEQRES 4 A 141 ARG GLY PRO GLU HIS SER ASN ILE GLN HIS PHE VAL GLU SEQRES 5 A 141 LYS VAL VAL PHE HIS LEU HIS GLU SER PHE PRO ARG PRO SEQRES 6 A 141 LYS ARG VAL CYS LYS ASP PRO PRO TYR LYS VAL GLU GLU SEQRES 7 A 141 SER GLY TYR ALA GLY PHE ILE LEU PRO ILE GLU VAL TYR SEQRES 8 A 141 PHE LYS ASN LYS GLU GLU PRO ARG LYS VAL ARG PHE ASP SEQRES 9 A 141 TYR ASP LEU PHE LEU HIS LEU GLU GLY HIS PRO PRO VAL SEQRES 10 A 141 ASN HIS LEU ARG CYS GLU LYS LEU THR PHE ASN ASN PRO SEQRES 11 A 141 THR GLU ASP PHE ARG ARG LYS LEU LEU LYS ALA SEQRES 1 B 141 GLY SER HIS MET ALA SER SER CYS ALA VAL GLN VAL LYS SEQRES 2 B 141 LEU GLU LEU GLY HIS ARG ALA GLN VAL ARG LYS LYS PRO SEQRES 3 B 141 THR VAL GLU GLY PHE THR HIS ASP TRP MET VAL PHE VAL SEQRES 4 B 141 ARG GLY PRO GLU HIS SER ASN ILE GLN HIS PHE VAL GLU SEQRES 5 B 141 LYS VAL VAL PHE HIS LEU HIS GLU SER PHE PRO ARG PRO SEQRES 6 B 141 LYS ARG VAL CYS LYS ASP PRO PRO TYR LYS VAL GLU GLU SEQRES 7 B 141 SER GLY TYR ALA GLY PHE ILE LEU PRO ILE GLU VAL TYR SEQRES 8 B 141 PHE LYS ASN LYS GLU GLU PRO ARG LYS VAL ARG PHE ASP SEQRES 9 B 141 TYR ASP LEU PHE LEU HIS LEU GLU GLY HIS PRO PRO VAL SEQRES 10 B 141 ASN HIS LEU ARG CYS GLU LYS LEU THR PHE ASN ASN PRO SEQRES 11 B 141 THR GLU ASP PHE ARG ARG LYS LEU LEU LYS ALA SEQRES 1 C 8 THR LYS GLN THR ALA ARG LBZ SER SEQRES 1 D 8 THR LYS GLN THR ALA ARG LBZ SER HET LBZ C 9 17 HET LBZ D 9 17 HETNAM LBZ (2~{S})-2-AZANYL-6-BENZAMIDO-HEXANOIC ACID FORMUL 3 LBZ 2(C13 H18 N2 O3) FORMUL 5 HOH *31(H2 O) HELIX 1 AA1 GLY A 41 SER A 45 5 5 HELIX 2 AA2 ASN A 46 HIS A 49 5 4 HELIX 3 AA3 THR A 131 ALA A 141 1 11 HELIX 4 AA4 GLY B 41 SER B 45 5 5 HELIX 5 AA5 ASN B 46 HIS B 49 5 4 HELIX 6 AA6 THR B 131 LYS B 140 1 10 SHEET 1 AA1 4 TYR A 74 GLY A 80 0 SHEET 2 AA1 4 HIS A 33 ARG A 40 -1 N TRP A 35 O GLU A 78 SHEET 3 AA1 4 ALA A 9 VAL A 22 -1 N GLU A 15 O ARG A 40 SHEET 4 AA1 4 VAL A 117 ASN A 128 -1 O ARG A 121 N LEU A 16 SHEET 1 AA2 4 LYS A 66 CYS A 69 0 SHEET 2 AA2 4 VAL A 51 HIS A 57 -1 N PHE A 56 O ARG A 67 SHEET 3 AA2 4 PHE A 84 PHE A 92 -1 O GLU A 89 N VAL A 55 SHEET 4 AA2 4 LYS A 100 LEU A 107 -1 O TYR A 105 N LEU A 86 SHEET 1 AA3 4 TYR B 74 GLY B 80 0 SHEET 2 AA3 4 HIS B 33 ARG B 40 -1 N VAL B 39 O TYR B 74 SHEET 3 AA3 4 ALA B 9 VAL B 22 -1 N GLU B 15 O ARG B 40 SHEET 4 AA3 4 VAL B 117 ASN B 128 -1 O ARG B 121 N LEU B 16 SHEET 1 AA4 4 LYS B 66 CYS B 69 0 SHEET 2 AA4 4 VAL B 51 HIS B 57 -1 N PHE B 56 O ARG B 67 SHEET 3 AA4 4 PHE B 84 PHE B 92 -1 O GLU B 89 N VAL B 55 SHEET 4 AA4 4 LYS B 100 LEU B 107 -1 O TYR B 105 N LEU B 86 LINK C ARG C 8 N LBZ C 9 1555 1555 1.33 LINK C LBZ C 9 N SER C 10 1555 1555 1.33 LINK C ARG D 8 N LBZ D 9 1555 1555 1.33 LINK C LBZ D 9 N SER D 10 1555 1555 1.33 CISPEP 1 PRO A 72 PRO A 73 0 0.54 CISPEP 2 GLU A 97 PRO A 98 0 1.39 CISPEP 3 PRO B 72 PRO B 73 0 -1.18 CISPEP 4 GLU B 97 PRO B 98 0 -2.41 CRYST1 90.258 42.236 90.253 90.00 96.64 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011079 0.000000 0.001290 0.00000 SCALE2 0.000000 0.023676 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011155 0.00000