HEADER TRANSPORT PROTEIN 20-JAN-20 6LSU TITLE CRYSTAL STRUCTURE OF USO1-2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTRACELLULAR PROTEIN TRANSPORT PROTEIN USO1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: INT-1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: S288C; SOURCE 6 GENE: USO1; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TETHERING PROTEIN, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.Y.HEO,H.H.LEE REVDAT 3 29-NOV-23 6LSU 1 REMARK REVDAT 2 10-AUG-22 6LSU 1 JRNL REVDAT 1 27-JAN-21 6LSU 0 JRNL AUTH Y.HEO,H.J.YOON,H.KO,S.JANG,H.H.LEE JRNL TITL CRYSTAL STRUCTURES OF USO1 MEMBRANE TETHER REVEAL AN JRNL TITL 2 ALTERNATIVE CONFORMATION IN THE GLOBULAR HEAD DOMAIN JRNL REF SCI REP V. 10 9544 2020 JRNL REFN ESSN 2045-2322 JRNL DOI 10.1038/S41598-020-66480-1 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.79 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 38865 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2058 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2810 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.53 REMARK 3 BIN R VALUE (WORKING SET) : 0.2250 REMARK 3 BIN FREE R VALUE SET COUNT : 155 REMARK 3 BIN FREE R VALUE : 0.2550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5449 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 124 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 74.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.11000 REMARK 3 B22 (A**2) : 0.11000 REMARK 3 B33 (A**2) : -0.22000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.067 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.051 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.148 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.568 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5558 ; 0.011 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 5217 ; 0.002 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7541 ; 1.742 ; 1.635 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12111 ; 1.391 ; 1.569 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 672 ; 6.611 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 290 ;37.574 ;23.241 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 991 ;19.857 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;22.237 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 750 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6098 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1141 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6LSU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1300015396. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41061 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.91300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 6LST REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M BIS-TRIS: HCL PH 6.0, 2M SODIUM REMARK 280 FORMATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.28067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 154.56133 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 154.56133 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 77.28067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 55720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -77.28067 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 ALA A -3 REMARK 465 MET A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 ILE A 3 REMARK 465 ILE A 4 REMARK 465 GLN A 120 REMARK 465 GLU A 121 REMARK 465 LYS A 122 REMARK 465 ALA A 459 REMARK 465 LYS A 460 REMARK 465 GLU A 461 REMARK 465 ASN A 462 REMARK 465 GLY A 463 REMARK 465 GLY A 464 REMARK 465 SER A 465 REMARK 465 ASN A 466 REMARK 465 LYS A 467 REMARK 465 SER A 468 REMARK 465 ASP A 469 REMARK 465 LYS A 470 REMARK 465 GLU A 471 REMARK 465 SER A 472 REMARK 465 ASP A 473 REMARK 465 SER A 474 REMARK 465 ASP A 475 REMARK 465 LYS A 476 REMARK 465 ASP A 477 REMARK 465 THR A 478 REMARK 465 ASP A 479 REMARK 465 GLY A 480 REMARK 465 LYS A 481 REMARK 465 ASP A 482 REMARK 465 GLY A 483 REMARK 465 THR A 484 REMARK 465 GLU A 485 REMARK 465 TYR A 486 REMARK 465 GLU A 487 REMARK 465 GLY A 488 REMARK 465 SER A 489 REMARK 465 LEU A 546 REMARK 465 GLU A 547 REMARK 465 ASP A 548 REMARK 465 GLU A 549 REMARK 465 GLU A 550 REMARK 465 ASP A 720 REMARK 465 GLU A 721 REMARK 465 GLU A 722 REMARK 465 PRO A 723 REMARK 465 ILE A 724 REMARK 465 ASN A 725 REMARK 465 LYS A 726 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 599 O HOH A 801 1.78 REMARK 500 O HOH A 806 O HOH A 878 1.91 REMARK 500 O ILE A 88 O HOH A 802 1.92 REMARK 500 NE ARG A 36 NH2 ARG A 68 1.96 REMARK 500 O GLU A 18 OG1 THR A 22 2.03 REMARK 500 O PRO A 351 CD1 LEU A 355 2.04 REMARK 500 NH1 ARG A 48 OD2 ASP A 95 2.04 REMARK 500 O HOH A 909 O HOH A 912 2.05 REMARK 500 CZ ARG A 36 NH2 ARG A 68 2.09 REMARK 500 OH TYR A 112 OD2 ASP A 250 2.09 REMARK 500 OE1 GLN A 556 O HOH A 803 2.10 REMARK 500 NH1 ARG A 51 OD2 ASP A 126 2.12 REMARK 500 NH1 ARG A 158 OD2 ASP A 196 2.14 REMARK 500 O HOH A 812 O HOH A 903 2.15 REMARK 500 NH1 ARG A 37 OD2 ASP A 72 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE2 GLN A 5 CA PHE A 379 5554 1.26 REMARK 500 NE2 GLN A 5 N PHE A 379 5554 1.27 REMARK 500 CD GLN A 5 CA PHE A 379 5554 1.29 REMARK 500 CD GLN A 5 C PHE A 379 5554 1.32 REMARK 500 CD GLN A 5 N PHE A 379 5554 1.37 REMARK 500 CG GLN A 5 CA PHE A 379 5554 1.45 REMARK 500 OE1 GLN A 5 O PHE A 379 5554 1.47 REMARK 500 NE2 GLN A 5 C TYR A 378 5554 1.62 REMARK 500 CG GLN A 5 CB PHE A 379 5554 1.66 REMARK 500 CD GLN A 5 O PHE A 379 5554 1.68 REMARK 500 CG GLN A 5 C PHE A 379 5554 1.75 REMARK 500 NE2 GLN A 5 O TYR A 378 5554 1.83 REMARK 500 O HOH A 900 O HOH A 905 2455 1.87 REMARK 500 OE1 GLN A 5 C PHE A 379 5554 1.90 REMARK 500 CG GLN A 5 O PHE A 379 5554 1.94 REMARK 500 O HOH A 916 O HOH A 922 5554 1.96 REMARK 500 CG2 ILE A 8 OD1 ASN A 405 5554 2.01 REMARK 500 CG GLN A 5 N PHE A 379 5554 2.06 REMARK 500 NE2 GLN A 5 C PHE A 379 5554 2.08 REMARK 500 CB GLN A 5 O PHE A 379 5554 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 126 CB - CA - C ANGL. DEV. = -12.3 DEGREES REMARK 500 PRO A 381 N - CA - CB ANGL. DEV. = -7.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 30 135.60 -35.23 REMARK 500 TYR A 50 52.58 -107.79 REMARK 500 ARG A 89 -74.72 -57.05 REMARK 500 PRO A 113 92.83 -61.33 REMARK 500 GLN A 124 -47.04 72.76 REMARK 500 ASP A 153 48.22 -93.43 REMARK 500 THR A 185 -15.97 70.40 REMARK 500 SER A 245 -112.64 -106.95 REMARK 500 ASP A 289 -70.36 -72.89 REMARK 500 SER A 363 30.80 72.45 REMARK 500 ASP A 380 148.38 59.45 REMARK 500 PRO A 381 -146.21 -119.82 REMARK 500 ALA A 410 47.93 -102.97 REMARK 500 SER A 412 -72.03 73.15 REMARK 500 ASN A 453 -80.03 -120.64 REMARK 500 ALA A 492 35.73 -145.60 REMARK 500 ASN A 508 50.68 -153.50 REMARK 500 GLN A 524 121.30 -38.23 REMARK 500 LYS A 673 75.28 -108.14 REMARK 500 HIS A 717 -55.12 72.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 924 DISTANCE = 5.94 ANGSTROMS DBREF 6LSU A 1 726 UNP P25386 USO1_YEAST 1 726 SEQADV 6LSU GLY A -4 UNP P25386 EXPRESSION TAG SEQADV 6LSU ALA A -3 UNP P25386 EXPRESSION TAG SEQADV 6LSU MET A -2 UNP P25386 EXPRESSION TAG SEQADV 6LSU GLY A -1 UNP P25386 EXPRESSION TAG SEQADV 6LSU SER A 0 UNP P25386 EXPRESSION TAG SEQRES 1 A 731 GLY ALA MET GLY SER MET ASP ILE ILE GLN GLY LEU ILE SEQRES 2 A 731 GLN GLN PRO LYS ILE GLN SER VAL ASP GLU THR ILE PRO SEQRES 3 A 731 THR LEU CYS ASP ARG VAL GLU ASN SER THR LEU ILE SER SEQRES 4 A 731 ASP ARG ARG SER ALA VAL LEU GLY LEU LYS ALA PHE SER SEQRES 5 A 731 ARG GLN TYR ARG GLU SER VAL ILE ALA SER GLY LEU LYS SEQRES 6 A 731 PRO LEU LEU ASN THR LEU LYS ARG ASP TYR MET ASP GLU SEQRES 7 A 731 ASP SER VAL LYS ALA ILE LEU GLU THR ILE LEU ILE LEU SEQRES 8 A 731 PHE ILE ARG GLY ASP GLY HIS ASP ASP LEU THR ARG GLY SEQRES 9 A 731 TRP ILE SER GLN GLN SER ARG LEU GLN ASN GLY LYS TYR SEQRES 10 A 731 PRO SER PRO LEU VAL MET LYS GLN GLU LYS GLU GLN VAL SEQRES 11 A 731 ASP GLN PHE SER LEU TRP ILE ALA ASP ALA LEU THR GLN SEQRES 12 A 731 SER GLU ASP LEU ILE HIS LEU LEU VAL GLU PHE TRP GLU SEQRES 13 A 731 ILE ASP ASN PHE HIS ILE ARG LEU TYR THR ILE GLN LEU SEQRES 14 A 731 LEU GLU ALA VAL MET ALA THR ARG PRO LEU LYS ALA ARG SEQRES 15 A 731 SER ALA LEU ILE SER LEU PRO THR SER ILE SER THR MET SEQRES 16 A 731 VAL SER LEU LEU ASP ASP MET HIS GLU PRO ILE ARG ASP SEQRES 17 A 731 GLU ALA ILE LEU LEU LEU MET ALA VAL VAL ASN ASP SER SEQRES 18 A 731 PRO HIS VAL GLN LYS LEU VAL ALA PHE GLU ASN ILE PHE SEQRES 19 A 731 GLU ARG LEU PHE SER ILE ILE GLU GLU GLU GLY GLY LEU SEQRES 20 A 731 ARG GLY SER LEU VAL VAL ASN ASP CYS LEU SER LEU ILE SEQRES 21 A 731 ASN ASN ILE LEU LYS TYR ASN THR SER ASN GLN THR LEU SEQRES 22 A 731 PHE LEU GLU THR GLY ASN LEU PRO LYS LEU ALA HIS LEU SEQRES 23 A 731 LEU SER GLU PRO ILE SER GLN ASP GLU VAL PHE PHE TRP SEQRES 24 A 731 ASN ASP GLN ARG ILE VAL ASN ILE ASN THR ALA LEU ASP SEQRES 25 A 731 ILE VAL SER LEU THR VAL GLU PRO GLY ASN THR VAL THR SEQRES 26 A 731 THR LYS HIS GLN ASN ALA LEU LEU ASP SER SER VAL LEU SEQRES 27 A 731 MET VAL VAL LEU ARG LEU ALA PHE PHE HIS ASN ILE PRO SEQRES 28 A 731 LYS LYS VAL ARG PRO VAL ALA LEU LEU THR ALA ALA ASN SEQRES 29 A 731 MET VAL ARG SER ASN GLU HIS ALA GLN LEU GLU PHE SER SEQRES 30 A 731 LYS ILE ASP VAL PRO TYR PHE ASP PRO SER LEU PRO VAL SEQRES 31 A 731 ASN SER THR ALA ASN GLY GLY PRO ILE LYS LEU ILE PRO SEQRES 32 A 731 VAL VAL SER ILE LEU ILE ASN TRP MET LEU TYR ALA ASN SEQRES 33 A 731 SER VAL HIS THR PHE ASP THR ARG VAL ALA CYS SER ARG SEQRES 34 A 731 LEU LEU LYS ALA TYR PHE MET ASP ASN PHE ASP LEU GLN SEQRES 35 A 731 ARG ASP PHE LEU LEU LYS GLN VAL GLN LEU CYS ASN ASN SEQRES 36 A 731 SER THR ASN ASN VAL GLY ASP ASN ALA LYS GLU ASN GLY SEQRES 37 A 731 GLY SER ASN LYS SER ASP LYS GLU SER ASP SER ASP LYS SEQRES 38 A 731 ASP THR ASP GLY LYS ASP GLY THR GLU TYR GLU GLY SER SEQRES 39 A 731 PHE LYS ALA ASN LEU PHE GLU VAL LEU LEU ASN TYR ASP SEQRES 40 A 731 ALA GLU LEU ASN LEU ASN PRO PHE LYS LEU PHE PHE THR SEQRES 41 A 731 THR ASP ILE PHE MET PHE PHE PHE GLN GLN ASP HIS LYS SEQRES 42 A 731 TYR SER GLU GLU LEU ARG GLU ILE THR ARG ASN VAL THR SEQRES 43 A 731 THR GLY ASN ASP LEU GLU ASP GLU GLU PRO LEU LYS ALA SEQRES 44 A 731 ILE GLN THR ILE SER GLU LEU LEU THR THR SER LEU THR SEQRES 45 A 731 ALA ALA ASP ILE ARG ILE PRO ILE SER TYR LEU THR PHE SEQRES 46 A 731 LEU ILE TYR TRP LEU PHE GLY ASP PHE LYS ALA THR ASN SEQRES 47 A 731 ASP PHE LEU SER ASP LYS SER VAL ILE LYS SER LEU LEU SEQRES 48 A 731 SER PHE SER TYR GLN ILE GLN ASP GLU ASP VAL THR ILE SEQRES 49 A 731 LYS CYS LEU VAL THR MET LEU LEU GLY VAL ALA TYR GLU SEQRES 50 A 731 PHE SER SER LYS GLU SER PRO PHE PRO ARG LYS GLU TYR SEQRES 51 A 731 PHE GLU PHE ILE THR LYS THR LEU GLY LYS ASP ASN TYR SEQRES 52 A 731 ALA SER ARG ILE LYS GLN PHE LYS LYS ASP SER TYR PHE SEQRES 53 A 731 SER LYS VAL ASP MET ASN GLU ASP SER ILE LEU THR PRO SEQRES 54 A 731 GLU LEU ASP GLU THR GLY LEU PRO LYS VAL TYR PHE SER SEQRES 55 A 731 THR TYR PHE ILE GLN LEU PHE ASN GLU ASN ILE TYR ARG SEQRES 56 A 731 ILE ARG THR ALA LEU SER HIS ASP PRO ASP GLU GLU PRO SEQRES 57 A 731 ILE ASN LYS FORMUL 2 HOH *124(H2 O) HELIX 1 AA1 PRO A 11 GLU A 18 1 8 HELIX 2 AA2 GLU A 18 SER A 30 1 13 HELIX 3 AA3 LEU A 32 TYR A 50 1 19 HELIX 4 AA4 TYR A 50 ASP A 69 1 20 HELIX 5 AA5 ASP A 72 PHE A 87 1 16 HELIX 6 AA6 THR A 97 GLN A 108 1 12 HELIX 7 AA7 ASP A 126 SER A 139 1 14 HELIX 8 AA8 SER A 139 TRP A 150 1 12 HELIX 9 AA9 ASN A 154 ALA A 170 1 17 HELIX 10 AB1 ARG A 172 LEU A 183 1 12 HELIX 11 AB2 THR A 185 LEU A 194 1 10 HELIX 12 AB3 HIS A 198 ASN A 214 1 17 HELIX 13 AB4 SER A 216 PHE A 225 1 10 HELIX 14 AB5 ASN A 227 GLY A 240 1 14 HELIX 15 AB6 GLY A 241 GLY A 244 5 4 HELIX 16 AB7 SER A 245 LYS A 260 1 16 HELIX 17 AB8 ASN A 262 THR A 272 1 11 HELIX 18 AB9 ASN A 274 SER A 283 1 10 HELIX 19 AC1 ASN A 295 VAL A 313 1 19 HELIX 20 AC2 VAL A 319 ASP A 329 1 11 HELIX 21 AC3 SER A 331 PHE A 342 1 12 HELIX 22 AC4 LYS A 348 ARG A 362 1 15 HELIX 23 AC5 ASN A 364 SER A 372 1 9 HELIX 24 AC6 VAL A 399 ALA A 410 1 12 HELIX 25 AC7 THR A 415 MET A 431 1 17 HELIX 26 AC8 ASN A 433 ASN A 453 1 21 HELIX 27 AC9 ASN A 493 ASN A 500 1 8 HELIX 28 AD1 GLU A 504 LEU A 507 5 4 HELIX 29 AD2 ASN A 508 GLN A 524 1 17 HELIX 30 AD3 TYR A 529 ASN A 539 1 11 HELIX 31 AD4 ALA A 554 THR A 564 1 11 HELIX 32 AD5 ILE A 571 PHE A 586 1 16 HELIX 33 AD6 ASP A 588 SER A 597 1 10 HELIX 34 AD7 ASP A 598 TYR A 610 1 13 HELIX 35 AD8 ASP A 616 PHE A 633 1 18 HELIX 36 AD9 PRO A 641 GLY A 654 1 14 HELIX 37 AE1 GLY A 654 SER A 669 1 16 HELIX 38 AE2 TYR A 670 LYS A 673 5 4 HELIX 39 AE3 SER A 697 ASN A 707 1 11 HELIX 40 AE4 ASN A 707 THR A 713 1 7 SHEET 1 AA1 2 ASP A 375 PHE A 379 0 SHEET 2 AA1 2 ILE A 394 PRO A 398 -1 O ILE A 397 N VAL A 376 SHEET 1 AA2 2 THR A 541 THR A 542 0 SHEET 2 AA2 2 LEU A 552 LYS A 553 -1 O LEU A 552 N THR A 542 CRYST1 104.376 104.376 231.842 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009581 0.005531 0.000000 0.00000 SCALE2 0.000000 0.011063 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004313 0.00000