HEADER OXYGEN BINDING 22-JAN-20 6LTL TITLE THE DIMERIC STRUCTURE OF G80A MYOGLOBIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYOGLOBIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EQUUS CABALLUS; SOURCE 3 ORGANISM_COMMON: HORSE; SOURCE 4 ORGANISM_TAXID: 9796; SOURCE 5 GENE: MB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OXYGEN STORAGE, OXYGEN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR S.NAGAO,A.SUDA,H.KOBAYASHI,N.SHIBATA,Y.HIGUCHI,S.HIROTA REVDAT 3 29-NOV-23 6LTL 1 LINK REVDAT 2 17-JUN-20 6LTL 1 JRNL REVDAT 1 06-MAY-20 6LTL 0 JRNL AUTH S.NAGAO,A.SUDA,H.KOBAYASHI,N.SHIBATA,Y.HIGUCHI,S.HIROTA JRNL TITL THERMODYNAMIC CONTROL OF DOMAIN SWAPPING BY MODULATING THE JRNL TITL 2 HELICAL PROPENSITY IN THE HINGE REGION OF MYOGLOBIN. JRNL REF CHEM ASIAN J V. 15 1743 2020 JRNL REFN ESSN 1861-471X JRNL PMID 32329228 JRNL DOI 10.1002/ASIA.202000307 REMARK 2 REMARK 2 RESOLUTION. 1.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 80296 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4186 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5906 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.44 REMARK 3 BIN R VALUE (WORKING SET) : 0.4170 REMARK 3 BIN FREE R VALUE SET COUNT : 292 REMARK 3 BIN FREE R VALUE : 0.4340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2400 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 86 REMARK 3 SOLVENT ATOMS : 347 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.18000 REMARK 3 B22 (A**2) : 0.07000 REMARK 3 B33 (A**2) : -0.24000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.057 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.059 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.047 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.910 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2563 ; 0.020 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2486 ; 0.007 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3476 ; 2.070 ; 2.040 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5739 ; 1.444 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 306 ; 4.956 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 107 ;39.439 ;25.140 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 459 ;12.317 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ; 6.856 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 363 ; 0.157 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2876 ; 0.014 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 584 ; 0.010 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1227 ; 0.754 ; 0.715 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1226 ; 0.754 ; 0.715 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1532 ; 1.082 ; 1.075 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1533 ; 1.081 ; 1.076 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1336 ; 1.501 ; 0.893 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1334 ; 1.496 ; 0.892 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1944 ; 2.179 ; 1.274 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3415 ; 4.017 ; 7.381 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3211 ; 3.950 ; 6.625 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1 153 B 1 153 8070 0.17 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 18 REMARK 3 ORIGIN FOR THE GROUP (A): 0.9394 -8.8007 -4.9629 REMARK 3 T TENSOR REMARK 3 T11: 0.0422 T22: 0.0205 REMARK 3 T33: 0.0481 T12: 0.0175 REMARK 3 T13: 0.0022 T23: -0.0079 REMARK 3 L TENSOR REMARK 3 L11: 1.4734 L22: 4.2647 REMARK 3 L33: 3.1884 L12: 1.8329 REMARK 3 L13: 0.9176 L23: 2.3390 REMARK 3 S TENSOR REMARK 3 S11: -0.0124 S12: -0.0228 S13: 0.0276 REMARK 3 S21: -0.0005 S22: 0.0654 S23: -0.1026 REMARK 3 S31: 0.0474 S32: 0.1040 S33: -0.0529 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 19 A 39 REMARK 3 ORIGIN FOR THE GROUP (A): -7.3398 0.7537 11.0146 REMARK 3 T TENSOR REMARK 3 T11: 0.0263 T22: 0.0155 REMARK 3 T33: 0.0387 T12: 0.0051 REMARK 3 T13: -0.0144 T23: -0.0042 REMARK 3 L TENSOR REMARK 3 L11: 2.7039 L22: 0.4849 REMARK 3 L33: 1.2938 L12: -0.1108 REMARK 3 L13: -0.6931 L23: 0.0935 REMARK 3 S TENSOR REMARK 3 S11: 0.0017 S12: -0.0971 S13: 0.0155 REMARK 3 S21: -0.0375 S22: 0.0028 S23: -0.0197 REMARK 3 S31: -0.0959 S32: 0.0885 S33: -0.0045 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 40 A 56 REMARK 3 ORIGIN FOR THE GROUP (A): -9.9783 1.6973 21.5405 REMARK 3 T TENSOR REMARK 3 T11: 0.0299 T22: 0.0465 REMARK 3 T33: 0.0335 T12: 0.0248 REMARK 3 T13: -0.0240 T23: -0.0219 REMARK 3 L TENSOR REMARK 3 L11: 3.3381 L22: 5.5351 REMARK 3 L33: 2.2350 L12: 2.3666 REMARK 3 L13: 0.2534 L23: 0.4058 REMARK 3 S TENSOR REMARK 3 S11: -0.0896 S12: -0.1005 S13: 0.2153 REMARK 3 S21: 0.0251 S22: -0.0155 S23: 0.2579 REMARK 3 S31: -0.1071 S32: -0.2117 S33: 0.1051 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 57 A 86 REMARK 3 ORIGIN FOR THE GROUP (A): 0.2487 -11.2155 7.5357 REMARK 3 T TENSOR REMARK 3 T11: 0.0190 T22: 0.0239 REMARK 3 T33: 0.0408 T12: 0.0053 REMARK 3 T13: -0.0080 T23: -0.0048 REMARK 3 L TENSOR REMARK 3 L11: 0.2823 L22: 3.5021 REMARK 3 L33: 3.1672 L12: -0.5445 REMARK 3 L13: -0.5107 L23: 2.9759 REMARK 3 S TENSOR REMARK 3 S11: -0.0138 S12: -0.0563 S13: 0.0093 REMARK 3 S21: 0.0240 S22: 0.0997 S23: -0.1208 REMARK 3 S31: -0.0371 S32: 0.1178 S33: -0.0859 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 87 A 106 REMARK 3 ORIGIN FOR THE GROUP (A): -5.7828 -35.8203 -12.7084 REMARK 3 T TENSOR REMARK 3 T11: 0.0349 T22: 0.0354 REMARK 3 T33: 0.0349 T12: -0.0019 REMARK 3 T13: -0.0179 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 0.7868 L22: 2.2060 REMARK 3 L33: 1.9596 L12: 0.4191 REMARK 3 L13: -0.0928 L23: -0.8153 REMARK 3 S TENSOR REMARK 3 S11: -0.0466 S12: 0.0357 S13: -0.0008 REMARK 3 S21: -0.1079 S22: 0.0453 S23: 0.0504 REMARK 3 S31: -0.0652 S32: -0.1620 S33: 0.0013 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 107 A 121 REMARK 3 ORIGIN FOR THE GROUP (A): 3.3587 -47.2166 2.2133 REMARK 3 T TENSOR REMARK 3 T11: 0.0468 T22: 0.0429 REMARK 3 T33: 0.0383 T12: 0.0106 REMARK 3 T13: -0.0038 T23: 0.0056 REMARK 3 L TENSOR REMARK 3 L11: 6.0269 L22: 2.7244 REMARK 3 L33: 5.0572 L12: -2.1838 REMARK 3 L13: 2.9607 L23: -1.9999 REMARK 3 S TENSOR REMARK 3 S11: -0.0529 S12: -0.3015 S13: -0.1848 REMARK 3 S21: 0.1228 S22: 0.1254 S23: -0.0064 REMARK 3 S31: 0.1668 S32: 0.0987 S33: -0.0725 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 122 A 138 REMARK 3 ORIGIN FOR THE GROUP (A): -1.2910 -39.7176 6.5859 REMARK 3 T TENSOR REMARK 3 T11: 0.0549 T22: 0.0451 REMARK 3 T33: 0.0556 T12: -0.0123 REMARK 3 T13: 0.0011 T23: -0.0020 REMARK 3 L TENSOR REMARK 3 L11: 2.3740 L22: 4.6441 REMARK 3 L33: 7.3064 L12: -0.8653 REMARK 3 L13: 1.5646 L23: -3.5400 REMARK 3 S TENSOR REMARK 3 S11: 0.0166 S12: -0.1415 S13: -0.1201 REMARK 3 S21: 0.0745 S22: -0.0246 S23: -0.0859 REMARK 3 S31: 0.2048 S32: 0.0445 S33: 0.0080 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 139 A 153 REMARK 3 ORIGIN FOR THE GROUP (A): -10.6619 -30.2436 -8.9149 REMARK 3 T TENSOR REMARK 3 T11: 0.0453 T22: 0.0427 REMARK 3 T33: 0.0498 T12: 0.0074 REMARK 3 T13: -0.0192 T23: 0.0161 REMARK 3 L TENSOR REMARK 3 L11: 1.1833 L22: 0.8019 REMARK 3 L33: 1.5927 L12: -0.3374 REMARK 3 L13: 0.0113 L23: 0.1411 REMARK 3 S TENSOR REMARK 3 S11: 0.0077 S12: 0.1372 S13: 0.0512 REMARK 3 S21: -0.1055 S22: -0.0027 S23: 0.1619 REMARK 3 S31: -0.2143 S32: -0.1452 S33: -0.0050 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 15 REMARK 3 ORIGIN FOR THE GROUP (A): 3.7641 -34.2873 9.0191 REMARK 3 T TENSOR REMARK 3 T11: 0.0580 T22: 0.0473 REMARK 3 T33: 0.0173 T12: -0.0277 REMARK 3 T13: -0.0157 T23: 0.0095 REMARK 3 L TENSOR REMARK 3 L11: 1.9670 L22: 3.1316 REMARK 3 L33: 2.7315 L12: -1.6658 REMARK 3 L13: -1.8356 L23: 1.5693 REMARK 3 S TENSOR REMARK 3 S11: 0.0342 S12: -0.1322 S13: -0.0032 REMARK 3 S21: -0.0199 S22: -0.0028 S23: 0.0716 REMARK 3 S31: -0.1591 S32: 0.0679 S33: -0.0314 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 16 B 42 REMARK 3 ORIGIN FOR THE GROUP (A): 4.1353 -46.7550 -7.6504 REMARK 3 T TENSOR REMARK 3 T11: 0.0520 T22: 0.0159 REMARK 3 T33: 0.0489 T12: -0.0125 REMARK 3 T13: 0.0133 T23: -0.0063 REMARK 3 L TENSOR REMARK 3 L11: 2.0951 L22: 1.7231 REMARK 3 L33: 1.5406 L12: 0.7891 REMARK 3 L13: 0.5207 L23: 0.0744 REMARK 3 S TENSOR REMARK 3 S11: 0.0263 S12: 0.0313 S13: -0.1385 REMARK 3 S21: -0.0839 S22: 0.0210 S23: -0.0879 REMARK 3 S31: 0.0440 S32: 0.0337 S33: -0.0474 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 43 B 51 REMARK 3 ORIGIN FOR THE GROUP (A): 2.5495 -49.7200 -19.9417 REMARK 3 T TENSOR REMARK 3 T11: 0.1565 T22: 0.0530 REMARK 3 T33: 0.0338 T12: 0.0008 REMARK 3 T13: 0.0068 T23: -0.0232 REMARK 3 L TENSOR REMARK 3 L11: 2.9266 L22: 8.4964 REMARK 3 L33: 2.0679 L12: -4.9171 REMARK 3 L13: 0.5280 L23: -1.3381 REMARK 3 S TENSOR REMARK 3 S11: 0.0488 S12: 0.0542 S13: -0.0036 REMARK 3 S21: -0.0982 S22: -0.0209 S23: -0.0027 REMARK 3 S31: 0.3063 S32: 0.0241 S33: -0.0279 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 52 B 63 REMARK 3 ORIGIN FOR THE GROUP (A): 9.9152 -50.2203 -14.3482 REMARK 3 T TENSOR REMARK 3 T11: 0.0593 T22: 0.0863 REMARK 3 T33: 0.0421 T12: 0.0121 REMARK 3 T13: 0.0052 T23: -0.0063 REMARK 3 L TENSOR REMARK 3 L11: 5.1749 L22: 12.9331 REMARK 3 L33: 2.8308 L12: 2.8577 REMARK 3 L13: 0.5768 L23: 2.9394 REMARK 3 S TENSOR REMARK 3 S11: 0.0462 S12: 0.0665 S13: -0.0372 REMARK 3 S21: -0.0008 S22: 0.0862 S23: -0.5102 REMARK 3 S31: 0.0557 S32: 0.3146 S33: -0.1324 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 64 B 86 REMARK 3 ORIGIN FOR THE GROUP (A): 3.6356 -30.2332 -0.7110 REMARK 3 T TENSOR REMARK 3 T11: 0.0230 T22: 0.0161 REMARK 3 T33: 0.0403 T12: -0.0001 REMARK 3 T13: -0.0002 T23: 0.0003 REMARK 3 L TENSOR REMARK 3 L11: 0.9965 L22: 3.0687 REMARK 3 L33: 3.1372 L12: -1.2614 REMARK 3 L13: -1.3296 L23: 2.5848 REMARK 3 S TENSOR REMARK 3 S11: -0.0262 S12: -0.0382 S13: 0.0404 REMARK 3 S21: 0.0324 S22: 0.0506 S23: -0.0262 REMARK 3 S31: -0.0386 S32: -0.0115 S33: -0.0244 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 87 B 103 REMARK 3 ORIGIN FOR THE GROUP (A): -11.4632 -15.7138 15.5254 REMARK 3 T TENSOR REMARK 3 T11: 0.0566 T22: 0.0410 REMARK 3 T33: 0.0517 T12: -0.0042 REMARK 3 T13: 0.0233 T23: 0.0097 REMARK 3 L TENSOR REMARK 3 L11: 2.6698 L22: 3.2455 REMARK 3 L33: 2.2735 L12: -1.5767 REMARK 3 L13: 0.5625 L23: -0.6590 REMARK 3 S TENSOR REMARK 3 S11: -0.0927 S12: -0.1650 S13: -0.1758 REMARK 3 S21: 0.2119 S22: 0.0638 S23: 0.0961 REMARK 3 S31: 0.1277 S32: 0.0430 S33: 0.0288 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 104 B 121 REMARK 3 ORIGIN FOR THE GROUP (A): -7.9944 -1.0574 2.0738 REMARK 3 T TENSOR REMARK 3 T11: 0.0315 T22: 0.0106 REMARK 3 T33: 0.0462 T12: 0.0075 REMARK 3 T13: -0.0019 T23: 0.0049 REMARK 3 L TENSOR REMARK 3 L11: 2.4378 L22: 2.2240 REMARK 3 L33: 1.5198 L12: 1.6817 REMARK 3 L13: -1.7531 L23: -1.2690 REMARK 3 S TENSOR REMARK 3 S11: 0.0369 S12: 0.0697 S13: 0.0974 REMARK 3 S21: -0.0924 S22: -0.0313 S23: 0.0215 REMARK 3 S31: -0.0832 S32: -0.0368 S33: -0.0056 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 122 B 153 REMARK 3 ORIGIN FOR THE GROUP (A): -10.7242 -14.2717 2.5483 REMARK 3 T TENSOR REMARK 3 T11: 0.0411 T22: 0.0225 REMARK 3 T33: 0.0486 T12: 0.0065 REMARK 3 T13: -0.0067 T23: -0.0029 REMARK 3 L TENSOR REMARK 3 L11: 1.3141 L22: 2.2461 REMARK 3 L33: 1.9452 L12: 0.9307 REMARK 3 L13: -0.9909 L23: -1.1705 REMARK 3 S TENSOR REMARK 3 S11: -0.0303 S12: -0.0066 S13: -0.0088 REMARK 3 S21: -0.0649 S22: 0.0341 S23: 0.0902 REMARK 3 S31: 0.0717 S32: -0.0661 S33: -0.0038 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6LTL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1300015376. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 85063 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.28 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.91800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3VM9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL BUFFER, 0.1M SODIUM REMARK 280 ACETATE, 10% (W/V) PEG 6000, PH 7.0, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.95100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.75700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.53000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.75700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.95100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.53000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -94.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 27 CD GLU A 27 OE2 -0.077 REMARK 500 GLU A 85 CD GLU A 85 OE1 -0.067 REMARK 500 GLU B 83 CD GLU B 83 OE2 -0.068 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 20 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG A 139 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ASP B 20 CB - CG - OD1 ANGL. DEV. = -8.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 20 82.44 -151.34 REMARK 500 PHE B 123 46.33 -146.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 490 DISTANCE = 6.62 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 93 NE2 REMARK 620 2 HEM A 201 NA 88.2 REMARK 620 3 HEM A 201 NB 90.8 89.9 REMARK 620 4 HEM A 201 NC 95.2 176.5 89.0 REMARK 620 5 HEM A 201 ND 92.4 89.7 176.7 91.2 REMARK 620 6 HOH B 311 O 178.5 91.9 90.6 84.8 86.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 330 O REMARK 620 2 HEM B 201 NA 92.5 REMARK 620 3 HEM B 201 NB 89.5 90.3 REMARK 620 4 HEM B 201 NC 84.0 176.4 88.7 REMARK 620 5 HEM B 201 ND 86.5 88.2 175.7 92.6 REMARK 620 6 HIS B 93 NE2 176.3 91.0 91.7 92.5 92.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM B 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6LS8 RELATED DB: PDB DBREF 6LTL A 1 153 UNP P68082 MYG_HORSE 2 154 DBREF 6LTL B 1 153 UNP P68082 MYG_HORSE 2 154 SEQADV 6LTL ALA A 80 UNP P68082 GLY 81 ENGINEERED MUTATION SEQADV 6LTL ALA B 80 UNP P68082 GLY 81 ENGINEERED MUTATION SEQRES 1 A 153 GLY LEU SER ASP GLY GLU TRP GLN GLN VAL LEU ASN VAL SEQRES 2 A 153 TRP GLY LYS VAL GLU ALA ASP ILE ALA GLY HIS GLY GLN SEQRES 3 A 153 GLU VAL LEU ILE ARG LEU PHE THR GLY HIS PRO GLU THR SEQRES 4 A 153 LEU GLU LYS PHE ASP LYS PHE LYS HIS LEU LYS THR GLU SEQRES 5 A 153 ALA GLU MET LYS ALA SER GLU ASP LEU LYS LYS HIS GLY SEQRES 6 A 153 THR VAL VAL LEU THR ALA LEU GLY GLY ILE LEU LYS LYS SEQRES 7 A 153 LYS ALA HIS HIS GLU ALA GLU LEU LYS PRO LEU ALA GLN SEQRES 8 A 153 SER HIS ALA THR LYS HIS LYS ILE PRO ILE LYS TYR LEU SEQRES 9 A 153 GLU PHE ILE SER ASP ALA ILE ILE HIS VAL LEU HIS SER SEQRES 10 A 153 LYS HIS PRO GLY ASP PHE GLY ALA ASP ALA GLN GLY ALA SEQRES 11 A 153 MET THR LYS ALA LEU GLU LEU PHE ARG ASN ASP ILE ALA SEQRES 12 A 153 ALA LYS TYR LYS GLU LEU GLY PHE GLN GLY SEQRES 1 B 153 GLY LEU SER ASP GLY GLU TRP GLN GLN VAL LEU ASN VAL SEQRES 2 B 153 TRP GLY LYS VAL GLU ALA ASP ILE ALA GLY HIS GLY GLN SEQRES 3 B 153 GLU VAL LEU ILE ARG LEU PHE THR GLY HIS PRO GLU THR SEQRES 4 B 153 LEU GLU LYS PHE ASP LYS PHE LYS HIS LEU LYS THR GLU SEQRES 5 B 153 ALA GLU MET LYS ALA SER GLU ASP LEU LYS LYS HIS GLY SEQRES 6 B 153 THR VAL VAL LEU THR ALA LEU GLY GLY ILE LEU LYS LYS SEQRES 7 B 153 LYS ALA HIS HIS GLU ALA GLU LEU LYS PRO LEU ALA GLN SEQRES 8 B 153 SER HIS ALA THR LYS HIS LYS ILE PRO ILE LYS TYR LEU SEQRES 9 B 153 GLU PHE ILE SER ASP ALA ILE ILE HIS VAL LEU HIS SER SEQRES 10 B 153 LYS HIS PRO GLY ASP PHE GLY ALA ASP ALA GLN GLY ALA SEQRES 11 B 153 MET THR LYS ALA LEU GLU LEU PHE ARG ASN ASP ILE ALA SEQRES 12 B 153 ALA LYS TYR LYS GLU LEU GLY PHE GLN GLY HET HEM A 201 43 HET HEM B 201 43 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN HEM HEME FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 5 HOH *347(H2 O) HELIX 1 AA1 SER A 3 ASP A 20 1 18 HELIX 2 AA2 ASP A 20 HIS A 36 1 17 HELIX 3 AA3 HIS A 36 GLU A 41 1 6 HELIX 4 AA4 LYS A 42 LYS A 47 5 6 HELIX 5 AA5 THR A 51 SER A 58 1 8 HELIX 6 AA6 SER A 58 LYS A 96 1 39 HELIX 7 AA7 PRO A 100 HIS A 119 1 20 HELIX 8 AA8 GLY A 124 LEU A 149 1 26 HELIX 9 AA9 SER B 3 ASP B 20 1 18 HELIX 10 AB1 ASP B 20 HIS B 36 1 17 HELIX 11 AB2 PRO B 37 PHE B 43 5 7 HELIX 12 AB3 THR B 51 SER B 58 1 8 HELIX 13 AB4 SER B 58 LYS B 96 1 39 HELIX 14 AB5 PRO B 100 HIS B 119 1 20 HELIX 15 AB6 PRO B 120 PHE B 123 5 4 HELIX 16 AB7 GLY B 124 GLY B 150 1 27 LINK NE2 HIS A 93 FE HEM A 201 1555 1555 2.10 LINK FE HEM A 201 O HOH B 311 1555 1555 2.17 LINK O HOH A 330 FE HEM B 201 1555 1555 2.13 LINK NE2 HIS B 93 FE HEM B 201 1555 1555 2.11 SITE 1 AC1 18 LEU A 89 SER A 92 HIS A 93 HIS A 97 SITE 2 AC1 18 ILE A 99 TYR A 103 HOH A 334 HOH A 377 SITE 3 AC1 18 HOH A 378 HOH A 389 HOH A 403 HOH A 417 SITE 4 AC1 18 LYS B 42 PHE B 43 HIS B 64 VAL B 67 SITE 5 AC1 18 VAL B 68 HOH B 311 SITE 1 AC2 18 THR A 39 LYS A 42 PHE A 43 LYS A 45 SITE 2 AC2 18 HIS A 64 VAL A 67 VAL A 68 HOH A 330 SITE 3 AC2 18 LEU B 89 SER B 92 HIS B 93 HIS B 97 SITE 4 AC2 18 ILE B 99 TYR B 103 HOH B 312 HOH B 313 SITE 5 AC2 18 HOH B 350 HOH B 352 CRYST1 57.902 63.060 83.514 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017271 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015858 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011974 0.00000