HEADER OXYGEN BINDING 22-JAN-20 6LTM TITLE THE DIMERIC STRUCTURE OF G80A/H81A/H82A MYOGLOBIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYOGLOBIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EQUUS CABALLUS; SOURCE 3 ORGANISM_COMMON: HORSE; SOURCE 4 ORGANISM_TAXID: 9796; SOURCE 5 GENE: MB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OXYGEN STORAGE, OXYGEN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR S.NAGAO,A.SUDA,H.KOBAYASHI,N.SHIBATA,Y.HIGUCHI,S.HIROTA REVDAT 3 29-NOV-23 6LTM 1 LINK REVDAT 2 17-JUN-20 6LTM 1 JRNL REVDAT 1 06-MAY-20 6LTM 0 JRNL AUTH S.NAGAO,A.SUDA,H.KOBAYASHI,N.SHIBATA,Y.HIGUCHI,S.HIROTA JRNL TITL THERMODYNAMIC CONTROL OF DOMAIN SWAPPING BY MODULATING THE JRNL TITL 2 HELICAL PROPENSITY IN THE HINGE REGION OF MYOGLOBIN. JRNL REF CHEM ASIAN J V. 15 1743 2020 JRNL REFN ESSN 1861-471X JRNL PMID 32329228 JRNL DOI 10.1002/ASIA.202000307 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.77 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 32712 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1756 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.70 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2274 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.27 REMARK 3 BIN R VALUE (WORKING SET) : 0.2410 REMARK 3 BIN FREE R VALUE SET COUNT : 128 REMARK 3 BIN FREE R VALUE : 0.2700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2380 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 86 REMARK 3 SOLVENT ATOMS : 133 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.24000 REMARK 3 B22 (A**2) : -0.10000 REMARK 3 B33 (A**2) : -0.14000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.110 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.109 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.073 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.779 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2530 ; 0.019 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2470 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3430 ; 1.933 ; 2.048 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5700 ; 0.916 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 304 ; 4.846 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 102 ;38.276 ;25.294 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 454 ;14.995 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ; 5.012 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 362 ; 0.143 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2834 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 566 ; 0.007 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1222 ; 1.019 ; 1.090 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1221 ; 1.019 ; 1.089 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1524 ; 1.479 ; 1.632 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1525 ; 1.479 ; 1.633 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1308 ; 1.862 ; 1.337 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1306 ; 1.857 ; 1.337 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1906 ; 2.925 ; 1.899 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3082 ; 3.913 ; 9.401 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3039 ; 3.901 ; 9.225 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 21 REMARK 3 ORIGIN FOR THE GROUP (A): -0.3019 -8.2978 3.7324 REMARK 3 T TENSOR REMARK 3 T11: 0.0516 T22: 0.0612 REMARK 3 T33: 0.0431 T12: -0.0023 REMARK 3 T13: 0.0299 T23: -0.0122 REMARK 3 L TENSOR REMARK 3 L11: 4.5704 L22: 7.1448 REMARK 3 L33: 6.9432 L12: -3.4111 REMARK 3 L13: 2.8338 L23: -5.1222 REMARK 3 S TENSOR REMARK 3 S11: -0.0630 S12: -0.2179 S13: -0.1263 REMARK 3 S21: 0.4857 S22: 0.1639 S23: 0.2637 REMARK 3 S31: -0.1900 S32: -0.3165 S33: -0.1009 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 22 A 40 REMARK 3 ORIGIN FOR THE GROUP (A): 8.6331 1.4003 -11.9962 REMARK 3 T TENSOR REMARK 3 T11: 0.0247 T22: 0.0159 REMARK 3 T33: 0.0235 T12: 0.0035 REMARK 3 T13: -0.0123 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 2.6568 L22: 1.6642 REMARK 3 L33: 2.4927 L12: 0.9436 REMARK 3 L13: -0.6212 L23: -0.4449 REMARK 3 S TENSOR REMARK 3 S11: -0.0565 S12: 0.0120 S13: 0.1162 REMARK 3 S21: 0.0230 S22: 0.0610 S23: -0.0179 REMARK 3 S31: -0.1514 S32: -0.1514 S33: -0.0045 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 41 A 49 REMARK 3 ORIGIN FOR THE GROUP (A): 8.8825 -1.8866 -23.2411 REMARK 3 T TENSOR REMARK 3 T11: 0.0904 T22: 0.1322 REMARK 3 T33: 0.0215 T12: -0.0824 REMARK 3 T13: -0.0276 T23: 0.0519 REMARK 3 L TENSOR REMARK 3 L11: 0.5805 L22: 7.8137 REMARK 3 L33: 7.4243 L12: -1.7937 REMARK 3 L13: 0.6816 L23: -4.7285 REMARK 3 S TENSOR REMARK 3 S11: 0.0455 S12: 0.1357 S13: 0.0695 REMARK 3 S21: -0.5033 S22: -0.0380 S23: -0.0583 REMARK 3 S31: 0.1413 S32: 0.0780 S33: -0.0075 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 50 A 86 REMARK 3 ORIGIN FOR THE GROUP (A): 1.0913 -6.2368 -9.8584 REMARK 3 T TENSOR REMARK 3 T11: 0.0162 T22: 0.0611 REMARK 3 T33: 0.0435 T12: 0.0039 REMARK 3 T13: -0.0050 T23: -0.0087 REMARK 3 L TENSOR REMARK 3 L11: 0.4956 L22: 4.4269 REMARK 3 L33: 3.6664 L12: 0.1995 REMARK 3 L13: -0.1587 L23: -3.0349 REMARK 3 S TENSOR REMARK 3 S11: -0.0231 S12: 0.0175 S13: 0.0332 REMARK 3 S21: -0.0286 S22: 0.0357 S23: -0.0158 REMARK 3 S31: -0.0732 S32: -0.0319 S33: -0.0127 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 87 A 121 REMARK 3 ORIGIN FOR THE GROUP (A): 3.5379 -39.5495 7.4729 REMARK 3 T TENSOR REMARK 3 T11: 0.0471 T22: 0.0420 REMARK 3 T33: 0.0471 T12: 0.0041 REMARK 3 T13: 0.0071 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 1.6151 L22: 2.2403 REMARK 3 L33: 2.9341 L12: 0.2962 REMARK 3 L13: 0.7615 L23: 0.7149 REMARK 3 S TENSOR REMARK 3 S11: 0.0079 S12: 0.0540 S13: -0.0564 REMARK 3 S21: -0.0693 S22: 0.0192 S23: -0.0558 REMARK 3 S31: 0.0544 S32: 0.0375 S33: -0.0271 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 122 A 153 REMARK 3 ORIGIN FOR THE GROUP (A): 7.4171 -34.3681 1.7054 REMARK 3 T TENSOR REMARK 3 T11: 0.0471 T22: 0.0345 REMARK 3 T33: 0.0214 T12: -0.0060 REMARK 3 T13: 0.0153 T23: 0.0085 REMARK 3 L TENSOR REMARK 3 L11: 2.5131 L22: 2.1608 REMARK 3 L33: 5.6884 L12: 1.0396 REMARK 3 L13: 2.1352 L23: 2.3506 REMARK 3 S TENSOR REMARK 3 S11: -0.0550 S12: 0.0684 S13: 0.0369 REMARK 3 S21: -0.1150 S22: 0.0386 S23: -0.0662 REMARK 3 S31: -0.1646 S32: 0.2355 S33: 0.0164 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 39 REMARK 3 ORIGIN FOR THE GROUP (A): -2.9876 -41.5602 0.9471 REMARK 3 T TENSOR REMARK 3 T11: 0.0363 T22: 0.0187 REMARK 3 T33: 0.0190 T12: 0.0004 REMARK 3 T13: -0.0041 T23: -0.0154 REMARK 3 L TENSOR REMARK 3 L11: 0.6331 L22: 1.0343 REMARK 3 L33: 1.6028 L12: 0.0285 REMARK 3 L13: -0.0469 L23: -0.6937 REMARK 3 S TENSOR REMARK 3 S11: -0.0212 S12: 0.0831 S13: -0.0655 REMARK 3 S21: -0.0130 S22: 0.0502 S23: 0.0005 REMARK 3 S31: 0.0667 S32: -0.0596 S33: -0.0291 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 40 B 65 REMARK 3 ORIGIN FOR THE GROUP (A): -3.7931 -48.5896 17.4745 REMARK 3 T TENSOR REMARK 3 T11: 0.0730 T22: 0.0162 REMARK 3 T33: 0.0137 T12: -0.0065 REMARK 3 T13: 0.0206 T23: 0.0086 REMARK 3 L TENSOR REMARK 3 L11: 1.7969 L22: 5.0931 REMARK 3 L33: 1.9245 L12: 0.7679 REMARK 3 L13: 0.1286 L23: -1.6978 REMARK 3 S TENSOR REMARK 3 S11: 0.0165 S12: -0.1618 S13: -0.0910 REMARK 3 S21: 0.2526 S22: -0.0220 S23: 0.1170 REMARK 3 S31: 0.1031 S32: -0.0396 S33: 0.0055 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 66 B 88 REMARK 3 ORIGIN FOR THE GROUP (A): -2.1979 -29.1033 -0.2366 REMARK 3 T TENSOR REMARK 3 T11: 0.0508 T22: 0.0361 REMARK 3 T33: 0.0330 T12: -0.0248 REMARK 3 T13: 0.0103 T23: 0.0083 REMARK 3 L TENSOR REMARK 3 L11: 1.1340 L22: 5.6816 REMARK 3 L33: 6.0908 L12: 2.3780 REMARK 3 L13: -2.3198 L23: -5.8224 REMARK 3 S TENSOR REMARK 3 S11: -0.0565 S12: 0.0790 S13: 0.0115 REMARK 3 S21: -0.0070 S22: 0.0240 S23: -0.0354 REMARK 3 S31: -0.0616 S32: 0.0349 S33: 0.0325 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 89 B 102 REMARK 3 ORIGIN FOR THE GROUP (A): 10.9145 -14.8026 -16.6237 REMARK 3 T TENSOR REMARK 3 T11: 0.0738 T22: 0.0380 REMARK 3 T33: 0.0385 T12: -0.0046 REMARK 3 T13: 0.0453 T23: -0.0216 REMARK 3 L TENSOR REMARK 3 L11: 5.2970 L22: 6.2154 REMARK 3 L33: 4.1403 L12: 1.5267 REMARK 3 L13: 1.7432 L23: 0.0150 REMARK 3 S TENSOR REMARK 3 S11: -0.0979 S12: 0.2343 S13: -0.1039 REMARK 3 S21: -0.4231 S22: 0.1332 S23: -0.3108 REMARK 3 S31: 0.0444 S32: 0.1365 S33: -0.0353 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 103 B 121 REMARK 3 ORIGIN FOR THE GROUP (A): 8.4975 -1.5362 -3.1581 REMARK 3 T TENSOR REMARK 3 T11: 0.0253 T22: 0.0095 REMARK 3 T33: 0.0229 T12: 0.0020 REMARK 3 T13: -0.0006 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 3.6751 L22: 3.8849 REMARK 3 L33: 4.5195 L12: -2.1405 REMARK 3 L13: -2.7743 L23: 2.3387 REMARK 3 S TENSOR REMARK 3 S11: 0.0095 S12: -0.1348 S13: 0.1417 REMARK 3 S21: 0.1624 S22: 0.0446 S23: -0.0690 REMARK 3 S31: -0.1274 S32: 0.0246 S33: -0.0541 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 122 B 153 REMARK 3 ORIGIN FOR THE GROUP (A): 10.9253 -14.2166 -3.2646 REMARK 3 T TENSOR REMARK 3 T11: 0.0350 T22: 0.0294 REMARK 3 T33: 0.0531 T12: -0.0115 REMARK 3 T13: -0.0273 T23: 0.0189 REMARK 3 L TENSOR REMARK 3 L11: 2.1626 L22: 4.7768 REMARK 3 L33: 6.3412 L12: -1.2314 REMARK 3 L13: -1.9804 L23: 3.7276 REMARK 3 S TENSOR REMARK 3 S11: -0.0161 S12: -0.0605 S13: -0.0552 REMARK 3 S21: 0.0947 S22: 0.0803 S23: -0.2170 REMARK 3 S31: 0.0951 S32: 0.1267 S33: -0.0642 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6LTM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1300015377. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34523 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3VM9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL BUFFER, 0.1M SODIUM REMARK 280 ACETATE, 12.5% (W/V) PEG 6000, PH 7.0, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.61250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.76600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.42050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.76600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.61250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.42050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -94.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 20 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 20 50.49 -146.99 REMARK 500 LYS A 96 -61.57 -104.66 REMARK 500 GLN B 152 -82.49 -78.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 93 NE2 REMARK 620 2 HEM A 201 NA 91.1 REMARK 620 3 HEM A 201 NB 90.4 89.9 REMARK 620 4 HEM A 201 NC 95.4 173.4 90.9 REMARK 620 5 HEM A 201 ND 93.6 88.1 175.5 90.6 REMARK 620 6 HOH B 324 O 178.0 90.9 89.8 82.6 86.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 324 O REMARK 620 2 HEM B 201 NA 91.2 REMARK 620 3 HEM B 201 NB 87.6 89.8 REMARK 620 4 HEM B 201 NC 85.6 176.6 89.4 REMARK 620 5 HEM B 201 ND 88.8 89.8 176.3 90.9 REMARK 620 6 HIS B 93 NE2 178.6 90.1 91.7 93.2 91.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM B 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6LS8 RELATED DB: PDB DBREF 6LTM A 1 153 UNP P68082 MYG_HORSE 2 154 DBREF 6LTM B 1 153 UNP P68082 MYG_HORSE 2 154 SEQADV 6LTM ALA A 80 UNP P68082 GLY 81 ENGINEERED MUTATION SEQADV 6LTM ALA A 81 UNP P68082 HIS 82 ENGINEERED MUTATION SEQADV 6LTM ALA A 82 UNP P68082 HIS 83 ENGINEERED MUTATION SEQADV 6LTM ALA B 80 UNP P68082 GLY 81 ENGINEERED MUTATION SEQADV 6LTM ALA B 81 UNP P68082 HIS 82 ENGINEERED MUTATION SEQADV 6LTM ALA B 82 UNP P68082 HIS 83 ENGINEERED MUTATION SEQRES 1 A 153 GLY LEU SER ASP GLY GLU TRP GLN GLN VAL LEU ASN VAL SEQRES 2 A 153 TRP GLY LYS VAL GLU ALA ASP ILE ALA GLY HIS GLY GLN SEQRES 3 A 153 GLU VAL LEU ILE ARG LEU PHE THR GLY HIS PRO GLU THR SEQRES 4 A 153 LEU GLU LYS PHE ASP LYS PHE LYS HIS LEU LYS THR GLU SEQRES 5 A 153 ALA GLU MET LYS ALA SER GLU ASP LEU LYS LYS HIS GLY SEQRES 6 A 153 THR VAL VAL LEU THR ALA LEU GLY GLY ILE LEU LYS LYS SEQRES 7 A 153 LYS ALA ALA ALA GLU ALA GLU LEU LYS PRO LEU ALA GLN SEQRES 8 A 153 SER HIS ALA THR LYS HIS LYS ILE PRO ILE LYS TYR LEU SEQRES 9 A 153 GLU PHE ILE SER ASP ALA ILE ILE HIS VAL LEU HIS SER SEQRES 10 A 153 LYS HIS PRO GLY ASP PHE GLY ALA ASP ALA GLN GLY ALA SEQRES 11 A 153 MET THR LYS ALA LEU GLU LEU PHE ARG ASN ASP ILE ALA SEQRES 12 A 153 ALA LYS TYR LYS GLU LEU GLY PHE GLN GLY SEQRES 1 B 153 GLY LEU SER ASP GLY GLU TRP GLN GLN VAL LEU ASN VAL SEQRES 2 B 153 TRP GLY LYS VAL GLU ALA ASP ILE ALA GLY HIS GLY GLN SEQRES 3 B 153 GLU VAL LEU ILE ARG LEU PHE THR GLY HIS PRO GLU THR SEQRES 4 B 153 LEU GLU LYS PHE ASP LYS PHE LYS HIS LEU LYS THR GLU SEQRES 5 B 153 ALA GLU MET LYS ALA SER GLU ASP LEU LYS LYS HIS GLY SEQRES 6 B 153 THR VAL VAL LEU THR ALA LEU GLY GLY ILE LEU LYS LYS SEQRES 7 B 153 LYS ALA ALA ALA GLU ALA GLU LEU LYS PRO LEU ALA GLN SEQRES 8 B 153 SER HIS ALA THR LYS HIS LYS ILE PRO ILE LYS TYR LEU SEQRES 9 B 153 GLU PHE ILE SER ASP ALA ILE ILE HIS VAL LEU HIS SER SEQRES 10 B 153 LYS HIS PRO GLY ASP PHE GLY ALA ASP ALA GLN GLY ALA SEQRES 11 B 153 MET THR LYS ALA LEU GLU LEU PHE ARG ASN ASP ILE ALA SEQRES 12 B 153 ALA LYS TYR LYS GLU LEU GLY PHE GLN GLY HET HEM A 201 43 HET HEM B 201 43 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN HEM HEME FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 5 HOH *133(H2 O) HELIX 1 AA1 SER A 3 ASP A 20 1 18 HELIX 2 AA2 ASP A 20 HIS A 36 1 17 HELIX 3 AA3 HIS A 36 LYS A 42 1 7 HELIX 4 AA4 PHE A 43 LYS A 47 5 5 HELIX 5 AA5 THR A 51 SER A 58 1 8 HELIX 6 AA6 SER A 58 LYS A 96 1 39 HELIX 7 AA7 PRO A 100 HIS A 119 1 20 HELIX 8 AA8 GLY A 124 LEU A 149 1 26 HELIX 9 AA9 SER B 3 ASP B 20 1 18 HELIX 10 AB1 ASP B 20 HIS B 36 1 17 HELIX 11 AB2 PRO B 37 PHE B 43 5 7 HELIX 12 AB3 THR B 51 SER B 58 1 8 HELIX 13 AB4 SER B 58 LYS B 96 1 39 HELIX 14 AB5 PRO B 100 HIS B 119 1 20 HELIX 15 AB6 PRO B 120 PHE B 123 5 4 HELIX 16 AB7 GLY B 124 LEU B 149 1 26 LINK NE2 HIS A 93 FE HEM A 201 1555 1555 2.08 LINK FE HEM A 201 O HOH B 324 1555 1555 2.13 LINK O HOH A 324 FE HEM B 201 1555 1555 2.12 LINK NE2 HIS B 93 FE HEM B 201 1555 1555 2.12 SITE 1 AC1 17 LEU A 89 SER A 92 HIS A 93 HIS A 97 SITE 2 AC1 17 ILE A 99 TYR A 103 HOH A 308 HOH A 311 SITE 3 AC1 17 HOH A 325 LYS B 42 PHE B 43 LYS B 45 SITE 4 AC1 17 HIS B 64 VAL B 67 VAL B 68 ALA B 71 SITE 5 AC1 17 HOH B 324 SITE 1 AC2 18 THR A 39 LYS A 42 PHE A 43 LYS A 45 SITE 2 AC2 18 HIS A 64 VAL A 67 VAL A 68 ALA A 71 SITE 3 AC2 18 HOH A 324 LEU B 89 SER B 92 HIS B 93 SITE 4 AC2 18 HIS B 97 ILE B 99 TYR B 103 LEU B 104 SITE 5 AC2 18 HOH B 310 HOH B 314 CRYST1 55.225 62.841 81.532 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018108 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015913 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012265 0.00000