HEADER HYDROLASE/RNA/DNA 24-JAN-20 6LU0 TITLE CRYSTAL STRUCTURE OF CAS12I2 TERNARY COMPLEX WITH 12 NT SPACER COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAS12I2; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: CRRNA; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DNA (5'-D(*GP*CP*CP*GP*CP*TP*TP*TP*CP*TP*T)-3'); COMPND 11 CHAIN: D; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 4; COMPND 14 MOLECULE: DNA (5'- COMPND 15 D(*GP*CP*TP*TP*GP*CP*TP*CP*TP*GP*TP*TP*GP*AP*AP*AP*GP*CP*GP*GP*C)- COMPND 16 3'); COMPND 17 CHAIN: C; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: UNIDENTIFIED; SOURCE 3 ORGANISM_TAXID: 32644; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 9 ORGANISM_TAXID: 32630; SOURCE 10 MOL_ID: 3; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630; SOURCE 14 MOL_ID: 4; SOURCE 15 SYNTHETIC: YES; SOURCE 16 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 17 ORGANISM_TAXID: 32630 KEYWDS CRISPR-CAS, CAS12I2, CAS12I2 BINARY COMPLEX, HYDROLASE, HYDROLASE- KEYWDS 2 RNA-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR X.HUANG,W.SUN,Z.CHENG,M.CHEN,X.LI,J.WANG,G.SHENG,W.GONG,Y.WANG REVDAT 3 29-NOV-23 6LU0 1 REMARK REVDAT 2 04-NOV-20 6LU0 1 JRNL REVDAT 1 28-OCT-20 6LU0 0 JRNL AUTH X.HUANG,W.SUN,Z.CHENG,M.CHEN,X.LI,J.WANG,G.SHENG,W.GONG, JRNL AUTH 2 Y.WANG JRNL TITL STRUCTURAL BASIS FOR TWO METAL-ION CATALYSIS OF DNA CLEAVAGE JRNL TITL 2 BY CAS12I2. JRNL REF NAT COMMUN V. 11 5241 2020 JRNL REFN ESSN 2041-1723 JRNL PMID 33067443 JRNL DOI 10.1038/S41467-020-19072-6 REMARK 2 REMARK 2 RESOLUTION. 3.22 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.22 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.56 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 26260 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1339 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.5600 - 6.9100 0.99 2676 141 0.2007 0.1995 REMARK 3 2 6.9100 - 5.5000 1.00 2556 156 0.2108 0.2087 REMARK 3 3 5.5000 - 4.8100 1.00 2569 144 0.1902 0.2619 REMARK 3 4 4.8100 - 4.3700 1.00 2555 136 0.1794 0.1860 REMARK 3 5 4.3700 - 4.0600 1.00 2527 120 0.1903 0.2132 REMARK 3 6 4.0600 - 3.8200 1.00 2551 149 0.1997 0.2482 REMARK 3 7 3.8200 - 3.6300 1.00 2508 142 0.2233 0.2550 REMARK 3 8 3.6300 - 3.4700 0.99 2532 94 0.2407 0.2589 REMARK 3 9 3.4700 - 3.3400 0.99 2465 139 0.2424 0.2758 REMARK 3 10 3.3400 - 3.2200 0.79 1982 118 0.2623 0.3095 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.359 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.843 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 63.59 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 8988 REMARK 3 ANGLE : 0.794 12409 REMARK 3 CHIRALITY : 0.049 1401 REMARK 3 PLANARITY : 0.006 1379 REMARK 3 DIHEDRAL : 19.836 1671 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6LU0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1300015445. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26456 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 0.86200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6LTR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NACL, 0.1 M BIS-TRIS PROPANE PH REMARK 280 7.8, 18.5% PEG 6000, EVAPORATION, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 142.35600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 142.35600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 46.77650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 61.33600 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 46.77650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 61.33600 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 142.35600 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 46.77650 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 61.33600 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 142.35600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 46.77650 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 61.33600 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 50690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -75.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, D, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE A 339 REMARK 465 PHE A 340 REMARK 465 ASP A 341 REMARK 465 SER A 342 REMARK 465 GLU A 343 REMARK 465 PHE A 344 REMARK 465 PHE A 345 REMARK 465 SER A 346 REMARK 465 GLY A 347 REMARK 465 GLU A 348 REMARK 465 GLU A 349 REMARK 465 THR A 350 REMARK 465 TYR A 351 REMARK 465 THR A 352 REMARK 465 ILE A 353 REMARK 465 CYS A 354 REMARK 465 VAL A 355 REMARK 465 HIS A 356 REMARK 465 HIS A 357 REMARK 465 LEU A 358 REMARK 465 GLY A 359 REMARK 465 GLY A 360 REMARK 465 LYS A 361 REMARK 465 ASP A 362 REMARK 465 LEU A 363 REMARK 465 SER A 364 REMARK 465 LYS A 365 REMARK 465 LEU A 366 REMARK 465 TYR A 367 REMARK 465 LYS A 368 REMARK 465 ALA A 369 REMARK 465 TRP A 370 REMARK 465 GLU A 371 REMARK 465 ASP A 372 REMARK 465 ASP A 373 REMARK 465 PRO A 374 REMARK 465 ALA A 375 REMARK 465 ASP A 376 REMARK 465 PRO A 377 REMARK 465 GLU A 378 REMARK 465 ASN A 379 REMARK 465 ALA A 380 REMARK 465 ILE A 381 REMARK 465 VAL A 382 REMARK 465 VAL A 383 REMARK 465 LEU A 384 REMARK 465 CYS A 385 REMARK 465 ASP A 386 REMARK 465 ASP A 387 REMARK 465 LEU A 388 REMARK 465 LYS A 389 REMARK 465 ASN A 390 REMARK 465 ASN A 391 REMARK 465 PHE A 392 REMARK 465 LYS A 393 REMARK 465 LYS A 394 REMARK 465 GLU A 395 REMARK 465 PRO A 396 REMARK 465 ILE A 397 REMARK 465 ARG A 398 REMARK 465 ASN A 399 REMARK 465 ILE A 400 REMARK 465 LEU A 401 REMARK 465 ARG A 402 REMARK 465 TYR A 403 REMARK 465 ILE A 404 REMARK 465 PHE A 405 REMARK 465 THR A 406 REMARK 465 ILE A 407 REMARK 465 ARG A 408 REMARK 465 GLN A 409 REMARK 465 GLU A 410 REMARK 465 LYS A 677 REMARK 465 LYS A 678 REMARK 465 ASN A 679 REMARK 465 LYS A 680 REMARK 465 LYS A 681 REMARK 465 LYS A 682 REMARK 465 GLU A 683 REMARK 465 ILE A 684 REMARK 465 LEU A 836 REMARK 465 SER A 837 REMARK 465 THR A 838 REMARK 465 THR A 839 REMARK 465 ASN A 840 REMARK 465 ASN A 841 REMARK 465 ALA A 842 REMARK 465 THR A 843 REMARK 465 LYS A 844 REMARK 465 LYS A 845 REMARK 465 LYS A 846 REMARK 465 ALA A 847 REMARK 465 ASN A 848 REMARK 465 SER A 849 REMARK 465 ARG A 850 REMARK 465 GLY A 1032 REMARK 465 ILE A 1033 REMARK 465 GLY A 1034 REMARK 465 GLU A 1035 REMARK 465 GLN A 1036 REMARK 465 SER A 1037 REMARK 465 SER A 1038 REMARK 465 ASP A 1039 REMARK 465 GLU A 1040 REMARK 465 GLU A 1041 REMARK 465 ASN A 1042 REMARK 465 PRO A 1043 REMARK 465 ASP A 1044 REMARK 465 GLY A 1045 REMARK 465 SER A 1046 REMARK 465 ARG A 1047 REMARK 465 ILE A 1048 REMARK 465 LYS A 1049 REMARK 465 LEU A 1050 REMARK 465 GLN A 1051 REMARK 465 LEU A 1052 REMARK 465 THR A 1053 REMARK 465 SER A 1054 REMARK 465 G B -1 REMARK 465 G B 0 REMARK 465 G B 34 REMARK 465 C B 35 REMARK 465 A B 36 REMARK 465 G B 37 REMARK 465 G B 38 REMARK 465 G B 39 REMARK 465 U B 40 REMARK 465 G B 41 REMARK 465 A B 42 REMARK 465 C B 43 REMARK 465 A B 44 REMARK 465 U B 45 REMARK 465 U B 46 REMARK 465 A B 47 REMARK 465 U B 48 REMARK 465 U B 49 REMARK 465 U B 50 REMARK 465 A B 51 REMARK 465 A B 52 REMARK 465 U B 53 REMARK 465 C B 54 REMARK 465 A B 55 REMARK 465 A B 56 REMARK 465 DT D 11 REMARK 465 DG C 1 REMARK 465 DC C 2 REMARK 465 DT C 3 REMARK 465 DT C 4 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 0 OG REMARK 470 GLU A 16 CG CD OE1 OE2 REMARK 470 LYS A 108 CG CD CE NZ REMARK 470 LEU A 327 CG CD1 CD2 REMARK 470 ASN A 329 CG OD1 ND2 REMARK 470 LEU A 336 CG CD1 CD2 REMARK 470 ASP A 338 CG OD1 OD2 REMARK 470 CYS A 411 SG REMARK 470 SER A 412 OG REMARK 470 ASP A 415 CG OD1 OD2 REMARK 470 ILE A 416 CG1 CG2 CD1 REMARK 470 LEU A 417 CG CD1 CD2 REMARK 470 PRO A 505 CG CD REMARK 470 VAL A 685 CG1 CG2 REMARK 470 ARG A 719 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 776 CG CD CE NZ REMARK 470 MET A 852 CG SD CE REMARK 470 SER A 879 OG REMARK 470 LEU A 880 CG CD1 CD2 REMARK 470 VAL A 906 CG1 CG2 REMARK 470 ASP A 911 CG OD1 OD2 REMARK 470 TRP A 912 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 912 CZ3 CH2 REMARK 470 ARG A 922 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 925 CG OD1 ND2 REMARK 470 ILE A 926 CG1 CG2 CD1 REMARK 470 GLU A 950 CG CD OE1 OE2 REMARK 470 LYS A 954 CG CD CE NZ REMARK 470 TRP A 955 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 955 CZ3 CH2 REMARK 470 ARG A 956 CG CD NE CZ NH1 NH2 REMARK 470 SER A 957 OG REMARK 470 ASP A 958 CG OD1 OD2 REMARK 470 ARG A 959 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 963 CG1 CG2 CD1 REMARK 470 TRP A 966 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 966 CZ3 CH2 REMARK 470 GLU A 974 CG CD OE1 OE2 REMARK 470 LYS A 975 CG CD CE NZ REMARK 470 LYS A 979 CG CD CE NZ REMARK 470 GLU A 980 CG CD OE1 OE2 REMARK 470 ARG A 991 CG CD NE CZ NH1 NH2 REMARK 470 LYS A1031 CG CD CE NZ REMARK 470 A B 1 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 730 OD2 ASP A 789 2.13 REMARK 500 OG SER A 81 O HOH A 1101 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 C B 31 N1 - C1' - C2' ANGL. DEV. = -8.0 DEGREES REMARK 500 DG C 5 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 60 44.08 -81.08 REMARK 500 GLN A 61 132.26 -173.88 REMARK 500 GLN A 79 4.43 -69.49 REMARK 500 SER A 118 -1.34 80.66 REMARK 500 ALA A 158 -90.88 11.53 REMARK 500 ASN A 164 -141.75 163.36 REMARK 500 GLU A 267 -169.36 -78.93 REMARK 500 THR A 284 -79.18 -100.01 REMARK 500 LEU A 330 -11.27 74.54 REMARK 500 ILE A 498 -53.63 -126.85 REMARK 500 ASN A 503 13.38 -140.02 REMARK 500 THR A 588 59.34 38.52 REMARK 500 LYS A 615 -60.98 -93.66 REMARK 500 ILE A 630 -63.56 -106.07 REMARK 500 VAL A 687 -132.32 51.27 REMARK 500 GLU A 688 -2.91 -161.88 REMARK 500 ALA A 689 -9.09 54.11 REMARK 500 ASP A 740 -36.85 71.68 REMARK 500 CYS A 741 9.20 -154.90 REMARK 500 ASN A 777 57.59 -96.22 REMARK 500 ASN A 778 89.39 -157.61 REMARK 500 ASN A 826 54.08 39.91 REMARK 500 THR A 928 34.67 -99.23 REMARK 500 TRP A 955 -160.95 -78.25 REMARK 500 ARG A 959 -37.86 -132.61 REMARK 500 LYS A 960 -63.66 -102.41 REMARK 500 CYS A 965 31.67 -95.31 REMARK 500 REMARK 500 REMARK: NULL DBREF 6LU0 A 0 1054 PDB 6LU0 6LU0 0 1054 DBREF 6LU0 B -1 56 PDB 6LU0 6LU0 -1 56 DBREF 6LU0 D 1 11 PDB 6LU0 6LU0 1 11 DBREF 6LU0 C 1 21 PDB 6LU0 6LU0 1 21 SEQRES 1 A 1055 SER MET SER SER ALA ILE LYS SER TYR LYS SER VAL LEU SEQRES 2 A 1055 ARG PRO ASN GLU ARG LYS ASN GLN LEU LEU LYS SER THR SEQRES 3 A 1055 ILE GLN CYS LEU GLU ASP GLY SER ALA PHE PHE PHE LYS SEQRES 4 A 1055 MET LEU GLN GLY LEU PHE GLY GLY ILE THR PRO GLU ILE SEQRES 5 A 1055 VAL ARG PHE SER THR GLU GLN GLU LYS GLN GLN GLN ASP SEQRES 6 A 1055 ILE ALA LEU TRP CYS ALA VAL ASN TRP PHE ARG PRO VAL SEQRES 7 A 1055 SER GLN ASP SER LEU THR HIS THR ILE ALA SER ASP ASN SEQRES 8 A 1055 LEU VAL GLU LYS PHE GLU GLU TYR TYR GLY GLY THR ALA SEQRES 9 A 1055 SER ASP ALA ILE LYS GLN TYR PHE SER ALA SER ILE GLY SEQRES 10 A 1055 GLU SER TYR TYR TRP ASN ASP CYS ARG GLN GLN TYR TYR SEQRES 11 A 1055 ASP LEU CYS ARG GLU LEU GLY VAL GLU VAL SER ASP LEU SEQRES 12 A 1055 THR HIS ASP LEU GLU ILE LEU CYS ARG GLU LYS CYS LEU SEQRES 13 A 1055 ALA VAL ALA THR GLU SER ASN GLN ASN ASN SER ILE ILE SEQRES 14 A 1055 SER VAL LEU PHE GLY THR GLY GLU LYS GLU ASP ARG SER SEQRES 15 A 1055 VAL LYS LEU ARG ILE THR LYS LYS ILE LEU GLU ALA ILE SEQRES 16 A 1055 SER ASN LEU LYS GLU ILE PRO LYS ASN VAL ALA PRO ILE SEQRES 17 A 1055 GLN GLU ILE ILE LEU ASN VAL ALA LYS ALA THR LYS GLU SEQRES 18 A 1055 THR PHE ARG GLN VAL TYR ALA GLY ASN LEU GLY ALA PRO SEQRES 19 A 1055 SER THR LEU GLU LYS PHE ILE ALA LYS ASP GLY GLN LYS SEQRES 20 A 1055 GLU PHE ASP LEU LYS LYS LEU GLN THR ASP LEU LYS LYS SEQRES 21 A 1055 VAL ILE ARG GLY LYS SER LYS GLU ARG ASP TRP CYS CYS SEQRES 22 A 1055 GLN GLU GLU LEU ARG SER TYR VAL GLU GLN ASN THR ILE SEQRES 23 A 1055 GLN TYR ASP LEU TRP ALA TRP GLY GLU MET PHE ASN LYS SEQRES 24 A 1055 ALA HIS THR ALA LEU LYS ILE LYS SER THR ARG ASN TYR SEQRES 25 A 1055 ASN PHE ALA LYS GLN ARG LEU GLU GLN PHE LYS GLU ILE SEQRES 26 A 1055 GLN SER LEU ASN ASN LEU LEU VAL VAL LYS LYS LEU ASN SEQRES 27 A 1055 ASP PHE PHE ASP SER GLU PHE PHE SER GLY GLU GLU THR SEQRES 28 A 1055 TYR THR ILE CYS VAL HIS HIS LEU GLY GLY LYS ASP LEU SEQRES 29 A 1055 SER LYS LEU TYR LYS ALA TRP GLU ASP ASP PRO ALA ASP SEQRES 30 A 1055 PRO GLU ASN ALA ILE VAL VAL LEU CYS ASP ASP LEU LYS SEQRES 31 A 1055 ASN ASN PHE LYS LYS GLU PRO ILE ARG ASN ILE LEU ARG SEQRES 32 A 1055 TYR ILE PHE THR ILE ARG GLN GLU CYS SER ALA GLN ASP SEQRES 33 A 1055 ILE LEU ALA ALA ALA LYS TYR ASN GLN GLN LEU ASP ARG SEQRES 34 A 1055 TYR LYS SER GLN LYS ALA ASN PRO SER VAL LEU GLY ASN SEQRES 35 A 1055 GLN GLY PHE THR TRP THR ASN ALA VAL ILE LEU PRO GLU SEQRES 36 A 1055 LYS ALA GLN ARG ASN ASP ARG PRO ASN SER LEU ASP LEU SEQRES 37 A 1055 ARG ILE TRP LEU TYR LEU LYS LEU ARG HIS PRO ASP GLY SEQRES 38 A 1055 ARG TRP LYS LYS HIS HIS ILE PRO PHE TYR ASP THR ARG SEQRES 39 A 1055 PHE PHE GLN GLU ILE TYR ALA ALA GLY ASN SER PRO VAL SEQRES 40 A 1055 ASP THR CYS GLN PHE ARG THR PRO ARG PHE GLY TYR HIS SEQRES 41 A 1055 LEU PRO LYS LEU THR ASP GLN THR ALA ILE ARG VAL ASN SEQRES 42 A 1055 LYS LYS HIS VAL LYS ALA ALA LYS THR GLU ALA ARG ILE SEQRES 43 A 1055 ARG LEU ALA ILE GLN GLN GLY THR LEU PRO VAL SER ASN SEQRES 44 A 1055 LEU LYS ILE THR GLU ILE SER ALA THR ILE ASN SER LYS SEQRES 45 A 1055 GLY GLN VAL ARG ILE PRO VAL LYS PHE ASP VAL GLY ARG SEQRES 46 A 1055 GLN LYS GLY THR LEU GLN ILE GLY ASP ARG PHE CYS GLY SEQRES 47 A 1055 TYR ASP GLN ASN GLN THR ALA SER HIS ALA TYR SER LEU SEQRES 48 A 1055 TRP GLU VAL VAL LYS GLU GLY GLN TYR HIS LYS GLU LEU SEQRES 49 A 1055 GLY CYS PHE VAL ARG PHE ILE SER SER GLY ASP ILE VAL SEQRES 50 A 1055 SER ILE THR GLU ASN ARG GLY ASN GLN PHE ASP GLN LEU SEQRES 51 A 1055 SER TYR GLU GLY LEU ALA TYR PRO GLN TYR ALA ASP TRP SEQRES 52 A 1055 ARG LYS LYS ALA SER LYS PHE VAL SER LEU TRP GLN ILE SEQRES 53 A 1055 THR LYS LYS ASN LYS LYS LYS GLU ILE VAL THR VAL GLU SEQRES 54 A 1055 ALA LYS GLU LYS PHE ASP ALA ILE CYS LYS TYR GLN PRO SEQRES 55 A 1055 ARG LEU TYR LYS PHE ASN LYS GLU TYR ALA TYR LEU LEU SEQRES 56 A 1055 ARG ASP ILE VAL ARG GLY LYS SER LEU VAL GLU LEU GLN SEQRES 57 A 1055 GLN ILE ARG GLN GLU ILE PHE ARG PHE ILE GLU GLN ASP SEQRES 58 A 1055 CYS GLY VAL THR ARG LEU GLY SER LEU SER LEU SER THR SEQRES 59 A 1055 LEU GLU THR VAL LYS ALA VAL LYS GLY ILE ILE TYR SER SEQRES 60 A 1055 TYR PHE SER THR ALA LEU ASN ALA SER LYS ASN ASN PRO SEQRES 61 A 1055 ILE SER ASP GLU GLN ARG LYS GLU PHE ASP PRO GLU LEU SEQRES 62 A 1055 PHE ALA LEU LEU GLU LYS LEU GLU LEU ILE ARG THR ARG SEQRES 63 A 1055 LYS LYS LYS GLN LYS VAL GLU ARG ILE ALA ASN SER LEU SEQRES 64 A 1055 ILE GLN THR CYS LEU GLU ASN ASN ILE LYS PHE ILE ARG SEQRES 65 A 1055 GLY ALA GLY ASP LEU SER THR THR ASN ASN ALA THR LYS SEQRES 66 A 1055 LYS LYS ALA ASN SER ARG SER MET ASP TRP LEU ALA ARG SEQRES 67 A 1055 GLY VAL PHE ASN LYS ILE ARG GLN LEU ALA PRO MET HIS SEQRES 68 A 1055 ASN ILE THR LEU PHE GLY CYS GLY SER LEU TYR THR SER SEQRES 69 A 1055 HIS GLN ASP PRO LEU VAL HIS ARG ASN PRO ASP LYS ALA SEQRES 70 A 1055 MET LYS CYS ARG TRP ALA ALA ILE PRO VAL LYS ASP ILE SEQRES 71 A 1055 GLY ASP TRP VAL LEU ARG LYS LEU SER GLN ASN LEU ARG SEQRES 72 A 1055 ALA LYS ASN ILE GLY THR GLY GLU TYR TYR HIS GLN GLY SEQRES 73 A 1055 VAL LYS GLU PHE LEU SER HIS TYR GLU LEU GLN ASP LEU SEQRES 74 A 1055 GLU GLU GLU LEU LEU LYS TRP ARG SER ASP ARG LYS SER SEQRES 75 A 1055 ASN ILE PRO CYS TRP VAL LEU GLN ASN ARG LEU ALA GLU SEQRES 76 A 1055 LYS LEU GLY ASN LYS GLU ALA VAL VAL TYR ILE PRO VAL SEQRES 77 A 1055 ARG GLY GLY ARG ILE TYR PHE ALA THR HIS LYS VAL ALA SEQRES 78 A 1055 THR GLY ALA VAL SER ILE VAL PHE ASP GLN LYS GLN VAL SEQRES 79 A 1055 TRP VAL CYS ASN ALA ASP HIS VAL ALA ALA ALA ASN ILE SEQRES 80 A 1055 ALA LEU THR VAL LYS GLY ILE GLY GLU GLN SER SER ASP SEQRES 81 A 1055 GLU GLU ASN PRO ASP GLY SER ARG ILE LYS LEU GLN LEU SEQRES 82 A 1055 THR SER SEQRES 1 B 58 G G A G A A A U C C G U C SEQRES 2 B 58 U U U C A U U G A C G G A SEQRES 3 B 58 A C A G A G C A A G C A G SEQRES 4 B 58 G G U G A C A U U A U U U SEQRES 5 B 58 A A U C A A SEQRES 1 D 11 DG DC DC DG DC DT DT DT DC DT DT SEQRES 1 C 21 DG DC DT DT DG DC DT DC DT DG DT DT DG SEQRES 2 C 21 DA DA DA DG DC DG DG DC FORMUL 5 HOH *21(H2 O) HELIX 1 AA1 ASN A 15 GLY A 46 1 32 HELIX 2 AA2 THR A 48 GLU A 57 1 10 HELIX 3 AA3 ASP A 64 TRP A 73 1 10 HELIX 4 AA4 ASN A 90 GLY A 100 1 11 HELIX 5 AA5 SER A 104 ALA A 113 1 10 HELIX 6 AA6 CYS A 124 GLY A 136 1 13 HELIX 7 AA7 GLU A 138 GLU A 152 1 15 HELIX 8 AA8 SER A 166 GLY A 173 1 8 HELIX 9 AA9 ASP A 179 ASN A 196 1 18 HELIX 10 AB1 VAL A 204 LYS A 216 1 13 HELIX 11 AB2 THR A 221 ALA A 227 1 7 HELIX 12 AB3 SER A 234 LYS A 242 1 9 HELIX 13 AB4 ASP A 249 LYS A 264 1 16 HELIX 14 AB5 CYS A 272 THR A 284 1 13 HELIX 15 AB6 ASP A 288 GLN A 325 1 38 HELIX 16 AB7 LEU A 331 ASP A 338 1 8 HELIX 17 AB8 SER A 412 GLN A 432 1 21 HELIX 18 AB9 LEU A 452 ALA A 456 5 5 HELIX 19 AC1 ASP A 491 ILE A 498 1 8 HELIX 20 AC2 THR A 513 GLY A 517 5 5 HELIX 21 AC3 ASN A 532 LYS A 534 5 3 HELIX 22 AC4 HIS A 535 GLN A 551 1 17 HELIX 23 AC5 ALA A 655 GLN A 658 5 4 HELIX 24 AC6 TYR A 659 LEU A 672 1 14 HELIX 25 AC7 LYS A 690 TYR A 699 1 10 HELIX 26 AC8 ARG A 702 ARG A 719 1 18 HELIX 27 AC9 SER A 722 GLN A 739 1 18 HELIX 28 AD1 SER A 750 LEU A 772 1 23 HELIX 29 AD2 SER A 781 ASP A 789 1 9 HELIX 30 AD3 ASP A 789 GLU A 824 1 36 HELIX 31 AD4 ASP A 853 ALA A 867 1 15 HELIX 32 AD5 PRO A 868 ASN A 871 5 4 HELIX 33 AD6 GLY A 910 ALA A 923 1 14 HELIX 34 AD7 GLY A 929 GLU A 944 1 16 HELIX 35 AD8 LEU A 945 LEU A 953 1 9 HELIX 36 AD9 TRP A 966 LYS A 975 1 10 HELIX 37 AE1 ALA A 1018 LEU A 1028 1 11 SHEET 1 AA1 4 MET A 1 VAL A 11 0 SHEET 2 AA1 4 GLN A 573 ARG A 584 -1 O VAL A 574 N SER A 10 SHEET 3 AA1 4 ALA A 566 ILE A 568 -1 N THR A 567 O ARG A 575 SHEET 4 AA1 4 PHE A 444 TRP A 446 -1 N TRP A 446 O ALA A 566 SHEET 1 AA2 2 PHE A 74 SER A 78 0 SHEET 2 AA2 2 TYR A 119 ASP A 123 -1 O TYR A 120 N VAL A 77 SHEET 1 AA3 2 ILE A 469 ARG A 476 0 SHEET 2 AA3 2 TRP A 482 PHE A 489 -1 O ILE A 487 N LEU A 471 SHEET 1 AA4 2 THR A 508 CYS A 509 0 SHEET 2 AA4 2 VAL A 556 SER A 557 1 O VAL A 556 N CYS A 509 SHEET 1 AA5 6 GLN A 618 HIS A 620 0 SHEET 2 AA5 6 CYS A 625 ASP A 634 -1 O VAL A 627 N GLN A 618 SHEET 3 AA5 6 HIS A 606 VAL A 614 -1 N LEU A 610 O SER A 631 SHEET 4 AA5 6 ARG A 594 GLN A 600 -1 N PHE A 595 O TRP A 611 SHEET 5 AA5 6 ILE A 827 GLY A 832 1 O LYS A 828 N ARG A 594 SHEET 6 AA5 6 THR A 873 GLY A 876 1 O THR A 873 N LYS A 828 SHEET 1 AA6 2 ILE A 638 ASN A 641 0 SHEET 2 AA6 2 ASN A 644 ASP A 647 -1 O PHE A 646 N THR A 639 SHEET 1 AA7 2 ALA A 902 PRO A 905 0 SHEET 2 AA7 2 VAL A 982 ILE A 985 -1 O VAL A 983 N ILE A 904 SHEET 1 AA8 3 ILE A 992 ALA A 995 0 SHEET 2 AA8 3 LYS A1011 ASN A1017 -1 O TRP A1014 N ALA A 995 SHEET 3 AA8 3 VAL A1004 PHE A1008 -1 N VAL A1004 O VAL A1015 CISPEP 1 ASN A 892 PRO A 893 0 -0.69 CRYST1 93.553 122.672 284.712 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010689 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008152 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003512 0.00000