HEADER CIRCADIAN CLOCK PROTEIN 27-JAN-20 6LUE TITLE CRYSTAL STRUCTURE OF MOUSE CRYPTOCHROME 1 IN COMPLEX WITH COMPOUND TITLE 2 KL201 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CRYPTOCHROME-1; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: CRY1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: SF9 KEYWDS CRYPTOCHROME, CRY, CIRCADIAN CLOCK, KL201, CIRCADIAN CLOCK PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.MILLER,Y.AIKAWA,T.HIROTA REVDAT 4 29-NOV-23 6LUE 1 REMARK REVDAT 3 30-SEP-20 6LUE 1 JRNL REVDAT 2 24-JUN-20 6LUE 1 JRNL REVDAT 1 10-JUN-20 6LUE 0 JRNL AUTH S.MILLER,Y.AIKAWA,A.SUGIYAMA,Y.NAGAI,A.HARA,T.OSHIMA, JRNL AUTH 2 K.AMAIKE,S.A.KAY,K.ITAMI,T.HIROTA JRNL TITL AN ISOFORM-SELECTIVE MODULATOR OF CRYPTOCHROME 1 REGULATES JRNL TITL 2 CIRCADIAN RHYTHMS IN MAMMALS. JRNL REF CELL CHEM BIOL V. 27 1192 2020 JRNL REFN ESSN 2451-9456 JRNL PMID 32502390 JRNL DOI 10.1016/J.CHEMBIOL.2020.05.008 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 71826 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 3577 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.13 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2631 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.2822 REMARK 3 BIN FREE R VALUE SET COUNT : 130 REMARK 3 BIN FREE R VALUE : 0.3304 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7344 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 394 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.14 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.288 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 301 REMARK 3 ORIGIN FOR THE GROUP (A): 135.5610 2.8270 74.0190 REMARK 3 T TENSOR REMARK 3 T11: 0.0715 T22: 0.1330 REMARK 3 T33: 0.1140 T12: 0.0117 REMARK 3 T13: -0.0112 T23: 0.0220 REMARK 3 L TENSOR REMARK 3 L11: 1.2460 L22: 1.0450 REMARK 3 L33: 0.7200 L12: -0.3680 REMARK 3 L13: -0.2660 L23: 0.0580 REMARK 3 S TENSOR REMARK 3 S11: -0.0419 S12: -0.1890 S13: -0.0690 REMARK 3 S21: -0.0094 S22: 0.0780 S23: 0.0173 REMARK 3 S31: -0.0016 S32: -0.0054 S33: -0.0120 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 302 A 492 REMARK 3 ORIGIN FOR THE GROUP (A): 113.4050 23.2930 67.4260 REMARK 3 T TENSOR REMARK 3 T11: 0.0959 T22: 0.1210 REMARK 3 T33: 0.1140 T12: 0.0280 REMARK 3 T13: -0.0071 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 0.9260 L22: 0.8970 REMARK 3 L33: 0.4320 L12: -0.0830 REMARK 3 L13: -0.2500 L23: -0.1090 REMARK 3 S TENSOR REMARK 3 S11: 0.0406 S12: -0.0160 S13: -0.0272 REMARK 3 S21: 0.0005 S22: 0.0220 S23: 0.0506 REMARK 3 S31: -0.1020 S32: -0.1190 S33: -0.0394 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 261 REMARK 3 ORIGIN FOR THE GROUP (A): 98.7540 38.5140 94.4930 REMARK 3 T TENSOR REMARK 3 T11: 0.1290 T22: 0.1390 REMARK 3 T33: 0.1130 T12: 0.0303 REMARK 3 T13: -0.0150 T23: 0.0089 REMARK 3 L TENSOR REMARK 3 L11: 0.6300 L22: 1.0760 REMARK 3 L33: 0.9910 L12: -0.0592 REMARK 3 L13: -0.0098 L23: -0.4270 REMARK 3 S TENSOR REMARK 3 S11: -0.0492 S12: -0.0387 S13: 0.0391 REMARK 3 S21: -0.0111 S22: 0.0787 S23: -0.0127 REMARK 3 S31: -0.0617 S32: -0.1370 S33: -0.0308 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 262 B 492 REMARK 3 ORIGIN FOR THE GROUP (A): 110.7310 19.4280 111.7100 REMARK 3 T TENSOR REMARK 3 T11: 0.1630 T22: 0.1650 REMARK 3 T33: 0.1110 T12: 0.0333 REMARK 3 T13: 0.0048 T23: 0.0154 REMARK 3 L TENSOR REMARK 3 L11: 0.3910 L22: 0.6770 REMARK 3 L33: 1.0960 L12: -0.2610 REMARK 3 L13: -0.0303 L23: -0.2290 REMARK 3 S TENSOR REMARK 3 S11: -0.1250 S12: -0.1300 S13: -0.0378 REMARK 3 S21: 0.1350 S22: 0.0662 S23: -0.0174 REMARK 3 S31: 0.0131 S32: -0.0204 S33: 0.0269 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.11 REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6LUE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1300015474. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER DIP-6040 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 71867 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 41.450 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.13300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.45000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4K0R REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% W/V PEG 3350, 3% V/V ETHYLENE REMARK 280 GLYCOL, 200 MM NH4CL, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 65.27550 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 71.63000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 65.27550 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 71.63000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 THR A 0 REMARK 465 MET A 1 REMARK 465 PRO A 39 REMARK 465 TRP A 40 REMARK 465 PHE A 41 REMARK 465 ALA A 42 REMARK 465 GLY A 43 REMARK 465 SER A 44 REMARK 465 SER A 45 REMARK 465 TRP A 230 REMARK 465 VAL A 231 REMARK 465 ALA A 232 REMARK 465 ASN A 233 REMARK 465 PHE A 234 REMARK 465 GLU A 235 REMARK 465 ARG A 236 REMARK 465 PRO A 237 REMARK 465 ARG A 238 REMARK 465 LYS A 277 REMARK 465 LYS A 278 REMARK 465 ASN A 279 REMARK 465 SER A 280 REMARK 465 PHE A 410 REMARK 465 HIS A 411 REMARK 465 ARG A 493 REMARK 465 TYR A 494 REMARK 465 ARG A 495 REMARK 465 GLY A 496 REMARK 465 GLY B -1 REMARK 465 TRP B 40 REMARK 465 PHE B 41 REMARK 465 ALA B 42 REMARK 465 GLY B 43 REMARK 465 SER B 44 REMARK 465 SER B 45 REMARK 465 TRP B 230 REMARK 465 VAL B 231 REMARK 465 ALA B 232 REMARK 465 ASN B 233 REMARK 465 PHE B 234 REMARK 465 GLU B 235 REMARK 465 ARG B 236 REMARK 465 PRO B 237 REMARK 465 ARG B 238 REMARK 465 LYS B 277 REMARK 465 LYS B 278 REMARK 465 ASN B 279 REMARK 465 PHE B 409 REMARK 465 PHE B 410 REMARK 465 HIS B 411 REMARK 465 ARG B 493 REMARK 465 TYR B 494 REMARK 465 ARG B 495 REMARK 465 GLY B 496 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 23 CG CD OE1 OE2 REMARK 470 ASP A 38 CG OD1 OD2 REMARK 470 ARG A 67 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 77 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 90 CG CD OE1 OE2 REMARK 470 LYS A 137 CG CD CE NZ REMARK 470 GLU A 140 CG CD OE1 OE2 REMARK 470 LYS A 151 CG CD CE NZ REMARK 470 ARG A 152 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 164 CG CD OE1 OE2 REMARK 470 MET A 165 CG SD CE REMARK 470 ASP A 201 CG OD1 OD2 REMARK 470 GLU A 222 CG CD OE1 OE2 REMARK 470 ARG A 223 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 226 CG CD OE1 OE2 REMARK 470 ARG A 227 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 228 CG CD CE NZ REMARK 470 MET A 239 CG SD CE REMARK 470 ARG A 256 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 263 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 275 CG CD CE NZ REMARK 470 SER A 281 OG REMARK 470 ARG A 305 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 322 CG CD CE NZ REMARK 470 GLN A 408 CG CD OE1 NE2 REMARK 470 ARG A 421 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 452 CG CD OE1 OE2 REMARK 470 LYS A 456 CG CD CE NZ REMARK 470 ARG A 478 CG CD NE CZ NH1 NH2 REMARK 470 MET B 1 CG SD CE REMARK 470 ARG B 51 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 77 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 86 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 137 CG CD CE NZ REMARK 470 GLU B 140 CG CD OE1 OE2 REMARK 470 LYS B 151 CG CD CE NZ REMARK 470 ARG B 152 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 161 CG CD OE1 OE2 REMARK 470 GLU B 164 CG CD OE1 OE2 REMARK 470 MET B 165 CG SD CE REMARK 470 LYS B 177 CG CD CE NZ REMARK 470 ASP B 201 CG OD1 OD2 REMARK 470 GLU B 222 CG CD OE1 OE2 REMARK 470 ARG B 223 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 226 CG CD OE1 OE2 REMARK 470 ARG B 227 CG CD NE CZ NH1 NH2 REMARK 470 MET B 239 CG SD CE REMARK 470 LYS B 275 CG CD CE NZ REMARK 470 VAL B 276 CG1 CG2 REMARK 470 ARG B 305 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 322 CG CD CE NZ REMARK 470 GLU B 325 CG CD OE1 OE2 REMARK 470 LYS B 379 CG CD CE NZ REMARK 470 GLN B 408 CG CD OE1 NE2 REMARK 470 ARG B 421 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 456 CG CD CE NZ REMARK 470 GLU B 475 CG CD OE1 OE2 REMARK 470 ARG B 478 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 489 CG CD OE1 NE2 REMARK 470 LEU B 491 CG CD1 CD2 REMARK 470 SER B 492 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 10 -76.61 -133.26 REMARK 500 ASP A 17 60.86 36.37 REMARK 500 SER A 129 -4.32 -158.01 REMARK 500 ASN A 323 88.04 -153.39 REMARK 500 THR A 366 -103.55 -101.77 REMARK 500 VAL A 464 -67.56 -126.27 REMARK 500 ARG B 10 -77.71 -136.52 REMARK 500 SER B 129 -6.68 -154.14 REMARK 500 ASP B 185 49.27 -99.74 REMARK 500 THR B 366 -100.73 -102.19 REMARK 500 ASP B 369 -57.62 -125.43 REMARK 500 VAL B 464 -70.16 -119.64 REMARK 500 LEU B 491 45.11 -89.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 796 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH B 797 DISTANCE = 6.50 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EUL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EUL B 501 DBREF 6LUE A 1 496 UNP P97784 CRY1_MOUSE 1 496 DBREF 6LUE B 1 496 UNP P97784 CRY1_MOUSE 1 496 SEQADV 6LUE GLY A -1 UNP P97784 EXPRESSION TAG SEQADV 6LUE THR A 0 UNP P97784 EXPRESSION TAG SEQADV 6LUE GLY B -1 UNP P97784 EXPRESSION TAG SEQADV 6LUE THR B 0 UNP P97784 EXPRESSION TAG SEQRES 1 A 498 GLY THR MET GLY VAL ASN ALA VAL HIS TRP PHE ARG LYS SEQRES 2 A 498 GLY LEU ARG LEU HIS ASP ASN PRO ALA LEU LYS GLU CYS SEQRES 3 A 498 ILE GLN GLY ALA ASP THR ILE ARG CYS VAL TYR ILE LEU SEQRES 4 A 498 ASP PRO TRP PHE ALA GLY SER SER ASN VAL GLY ILE ASN SEQRES 5 A 498 ARG TRP ARG PHE LEU LEU GLN CYS LEU GLU ASP LEU ASP SEQRES 6 A 498 ALA ASN LEU ARG LYS LEU ASN SER ARG LEU PHE VAL ILE SEQRES 7 A 498 ARG GLY GLN PRO ALA ASP VAL PHE PRO ARG LEU PHE LYS SEQRES 8 A 498 GLU TRP ASN ILE THR LYS LEU SER ILE GLU TYR ASP SER SEQRES 9 A 498 GLU PRO PHE GLY LYS GLU ARG ASP ALA ALA ILE LYS LYS SEQRES 10 A 498 LEU ALA THR GLU ALA GLY VAL GLU VAL ILE VAL ARG ILE SEQRES 11 A 498 SER HIS THR LEU TYR ASP LEU ASP LYS ILE ILE GLU LEU SEQRES 12 A 498 ASN GLY GLY GLN PRO PRO LEU THR TYR LYS ARG PHE GLN SEQRES 13 A 498 THR LEU VAL SER LYS MET GLU PRO LEU GLU MET PRO ALA SEQRES 14 A 498 ASP THR ILE THR SER ASP VAL ILE GLY LYS CYS MET THR SEQRES 15 A 498 PRO LEU SER ASP ASP HIS ASP GLU LYS TYR GLY VAL PRO SEQRES 16 A 498 SER LEU GLU GLU LEU GLY PHE ASP THR ASP GLY LEU SER SEQRES 17 A 498 SER ALA VAL TRP PRO GLY GLY GLU THR GLU ALA LEU THR SEQRES 18 A 498 ARG LEU GLU ARG HIS LEU GLU ARG LYS ALA TRP VAL ALA SEQRES 19 A 498 ASN PHE GLU ARG PRO ARG MET ASN ALA ASN SER LEU LEU SEQRES 20 A 498 ALA SER PRO THR GLY LEU SER PRO TYR LEU ARG PHE GLY SEQRES 21 A 498 CYS LEU SER CYS ARG LEU PHE TYR PHE LYS LEU THR ASP SEQRES 22 A 498 LEU TYR LYS LYS VAL LYS LYS ASN SER SER PRO PRO LEU SEQRES 23 A 498 SER LEU TYR GLY GLN LEU LEU TRP ARG GLU PHE PHE TYR SEQRES 24 A 498 THR ALA ALA THR ASN ASN PRO ARG PHE ASP LYS MET GLU SEQRES 25 A 498 GLY ASN PRO ILE CYS VAL GLN ILE PRO TRP ASP LYS ASN SEQRES 26 A 498 PRO GLU ALA LEU ALA LYS TRP ALA GLU GLY ARG THR GLY SEQRES 27 A 498 PHE PRO TRP ILE ASP ALA ILE MET THR GLN LEU ARG GLN SEQRES 28 A 498 GLU GLY TRP ILE HIS HIS LEU ALA ARG HIS ALA VAL ALA SEQRES 29 A 498 CYS PHE LEU THR ARG GLY ASP LEU TRP ILE SER TRP GLU SEQRES 30 A 498 GLU GLY MET LYS VAL PHE GLU GLU LEU LEU LEU ASP ALA SEQRES 31 A 498 ASP TRP SER ILE ASN ALA GLY SER TRP MET TRP LEU SER SEQRES 32 A 498 CYS SER SER PHE PHE GLN GLN PHE PHE HIS CYS TYR CYS SEQRES 33 A 498 PRO VAL GLY PHE GLY ARG ARG THR ASP PRO ASN GLY ASP SEQRES 34 A 498 TYR ILE ARG ARG TYR LEU PRO VAL LEU ARG GLY PHE PRO SEQRES 35 A 498 ALA LYS TYR ILE TYR ASP PRO TRP ASN ALA PRO GLU GLY SEQRES 36 A 498 ILE GLN LYS VAL ALA LYS CYS LEU ILE GLY VAL ASN TYR SEQRES 37 A 498 PRO LYS PRO MET VAL ASN HIS ALA GLU ALA SER ARG LEU SEQRES 38 A 498 ASN ILE GLU ARG MET LYS GLN ILE TYR GLN GLN LEU SER SEQRES 39 A 498 ARG TYR ARG GLY SEQRES 1 B 498 GLY THR MET GLY VAL ASN ALA VAL HIS TRP PHE ARG LYS SEQRES 2 B 498 GLY LEU ARG LEU HIS ASP ASN PRO ALA LEU LYS GLU CYS SEQRES 3 B 498 ILE GLN GLY ALA ASP THR ILE ARG CYS VAL TYR ILE LEU SEQRES 4 B 498 ASP PRO TRP PHE ALA GLY SER SER ASN VAL GLY ILE ASN SEQRES 5 B 498 ARG TRP ARG PHE LEU LEU GLN CYS LEU GLU ASP LEU ASP SEQRES 6 B 498 ALA ASN LEU ARG LYS LEU ASN SER ARG LEU PHE VAL ILE SEQRES 7 B 498 ARG GLY GLN PRO ALA ASP VAL PHE PRO ARG LEU PHE LYS SEQRES 8 B 498 GLU TRP ASN ILE THR LYS LEU SER ILE GLU TYR ASP SER SEQRES 9 B 498 GLU PRO PHE GLY LYS GLU ARG ASP ALA ALA ILE LYS LYS SEQRES 10 B 498 LEU ALA THR GLU ALA GLY VAL GLU VAL ILE VAL ARG ILE SEQRES 11 B 498 SER HIS THR LEU TYR ASP LEU ASP LYS ILE ILE GLU LEU SEQRES 12 B 498 ASN GLY GLY GLN PRO PRO LEU THR TYR LYS ARG PHE GLN SEQRES 13 B 498 THR LEU VAL SER LYS MET GLU PRO LEU GLU MET PRO ALA SEQRES 14 B 498 ASP THR ILE THR SER ASP VAL ILE GLY LYS CYS MET THR SEQRES 15 B 498 PRO LEU SER ASP ASP HIS ASP GLU LYS TYR GLY VAL PRO SEQRES 16 B 498 SER LEU GLU GLU LEU GLY PHE ASP THR ASP GLY LEU SER SEQRES 17 B 498 SER ALA VAL TRP PRO GLY GLY GLU THR GLU ALA LEU THR SEQRES 18 B 498 ARG LEU GLU ARG HIS LEU GLU ARG LYS ALA TRP VAL ALA SEQRES 19 B 498 ASN PHE GLU ARG PRO ARG MET ASN ALA ASN SER LEU LEU SEQRES 20 B 498 ALA SER PRO THR GLY LEU SER PRO TYR LEU ARG PHE GLY SEQRES 21 B 498 CYS LEU SER CYS ARG LEU PHE TYR PHE LYS LEU THR ASP SEQRES 22 B 498 LEU TYR LYS LYS VAL LYS LYS ASN SER SER PRO PRO LEU SEQRES 23 B 498 SER LEU TYR GLY GLN LEU LEU TRP ARG GLU PHE PHE TYR SEQRES 24 B 498 THR ALA ALA THR ASN ASN PRO ARG PHE ASP LYS MET GLU SEQRES 25 B 498 GLY ASN PRO ILE CYS VAL GLN ILE PRO TRP ASP LYS ASN SEQRES 26 B 498 PRO GLU ALA LEU ALA LYS TRP ALA GLU GLY ARG THR GLY SEQRES 27 B 498 PHE PRO TRP ILE ASP ALA ILE MET THR GLN LEU ARG GLN SEQRES 28 B 498 GLU GLY TRP ILE HIS HIS LEU ALA ARG HIS ALA VAL ALA SEQRES 29 B 498 CYS PHE LEU THR ARG GLY ASP LEU TRP ILE SER TRP GLU SEQRES 30 B 498 GLU GLY MET LYS VAL PHE GLU GLU LEU LEU LEU ASP ALA SEQRES 31 B 498 ASP TRP SER ILE ASN ALA GLY SER TRP MET TRP LEU SER SEQRES 32 B 498 CYS SER SER PHE PHE GLN GLN PHE PHE HIS CYS TYR CYS SEQRES 33 B 498 PRO VAL GLY PHE GLY ARG ARG THR ASP PRO ASN GLY ASP SEQRES 34 B 498 TYR ILE ARG ARG TYR LEU PRO VAL LEU ARG GLY PHE PRO SEQRES 35 B 498 ALA LYS TYR ILE TYR ASP PRO TRP ASN ALA PRO GLU GLY SEQRES 36 B 498 ILE GLN LYS VAL ALA LYS CYS LEU ILE GLY VAL ASN TYR SEQRES 37 B 498 PRO LYS PRO MET VAL ASN HIS ALA GLU ALA SER ARG LEU SEQRES 38 B 498 ASN ILE GLU ARG MET LYS GLN ILE TYR GLN GLN LEU SER SEQRES 39 B 498 ARG TYR ARG GLY HET EUL A 501 23 HET EUL B 501 23 HETNAM EUL 2-BROMANYL-N-(5,6,7,8-TETRAHYDRO-[1]BENZOTHIOLO[2,3- HETNAM 2 EUL D]PYRIMIDIN-4-YL)BENZAMIDE FORMUL 3 EUL 2(C17 H14 BR N3 O S) FORMUL 5 HOH *394(H2 O) HELIX 1 AA1 ASN A 18 GLN A 26 1 9 HELIX 2 AA2 GLY A 48 LEU A 69 1 22 HELIX 3 AA3 GLN A 79 TRP A 91 1 13 HELIX 4 AA4 GLU A 103 GLY A 121 1 19 HELIX 5 AA5 ASP A 134 ASN A 142 1 9 HELIX 6 AA6 THR A 149 MET A 160 1 12 HELIX 7 AA7 THR A 171 GLY A 176 1 6 HELIX 8 AA8 ASP A 185 GLY A 191 1 7 HELIX 9 AA9 LEU A 195 GLY A 199 5 5 HELIX 10 AB1 GLY A 213 ALA A 229 1 17 HELIX 11 AB2 ALA A 241 LEU A 245 5 5 HELIX 12 AB3 LEU A 251 PHE A 257 1 7 HELIX 13 AB4 SER A 261 VAL A 276 1 16 HELIX 14 AB5 PRO A 283 LEU A 286 5 4 HELIX 15 AB6 TYR A 287 THR A 301 1 15 HELIX 16 AB7 ASN A 323 GLU A 332 1 10 HELIX 17 AB8 PHE A 337 GLY A 351 1 15 HELIX 18 AB9 HIS A 354 THR A 366 1 13 HELIX 19 AC1 SER A 373 LEU A 385 1 13 HELIX 20 AC2 ASP A 389 SER A 401 1 13 HELIX 21 AC3 VAL A 416 ASP A 423 1 8 HELIX 22 AC4 GLY A 426 LEU A 433 1 8 HELIX 23 AC5 PRO A 434 ARG A 437 5 4 HELIX 24 AC6 PRO A 440 TYR A 445 1 6 HELIX 25 AC7 ASP A 446 ALA A 450 5 5 HELIX 26 AC8 PRO A 451 ALA A 458 1 8 HELIX 27 AC9 ASN A 472 SER A 492 1 21 HELIX 28 AD1 ASN B 18 GLN B 26 1 9 HELIX 29 AD2 GLY B 48 LEU B 69 1 22 HELIX 30 AD3 GLN B 79 TRP B 91 1 13 HELIX 31 AD4 GLU B 103 GLY B 121 1 19 HELIX 32 AD5 ASP B 134 ASN B 142 1 9 HELIX 33 AD6 THR B 149 LYS B 159 1 11 HELIX 34 AD7 THR B 171 GLY B 176 1 6 HELIX 35 AD8 ASP B 185 GLY B 191 1 7 HELIX 36 AD9 LEU B 195 GLY B 199 5 5 HELIX 37 AE1 GLY B 213 ALA B 229 1 17 HELIX 38 AE2 ALA B 241 LEU B 245 5 5 HELIX 39 AE3 LEU B 251 PHE B 257 1 7 HELIX 40 AE4 SER B 261 VAL B 276 1 16 HELIX 41 AE5 PRO B 283 LEU B 286 5 4 HELIX 42 AE6 TYR B 287 THR B 301 1 15 HELIX 43 AE7 ASN B 323 GLY B 333 1 11 HELIX 44 AE8 PHE B 337 GLY B 351 1 15 HELIX 45 AE9 HIS B 354 THR B 366 1 13 HELIX 46 AF1 SER B 373 LEU B 385 1 13 HELIX 47 AF2 ASP B 389 SER B 401 1 13 HELIX 48 AF3 VAL B 416 ASP B 423 1 8 HELIX 49 AF4 GLY B 426 LEU B 433 1 8 HELIX 50 AF5 PRO B 434 ARG B 437 5 4 HELIX 51 AF6 PRO B 440 TYR B 445 1 6 HELIX 52 AF7 ASP B 446 ALA B 450 5 5 HELIX 53 AF8 PRO B 451 ALA B 458 1 8 HELIX 54 AF9 ASN B 472 LEU B 491 1 20 SHEET 1 AA1 5 LEU A 73 ARG A 77 0 SHEET 2 AA1 5 THR A 30 LEU A 37 1 N CYS A 33 O PHE A 74 SHEET 3 AA1 5 ASN A 4 PHE A 9 1 N PHE A 9 O VAL A 34 SHEET 4 AA1 5 LYS A 95 GLU A 99 1 O SER A 97 N TRP A 8 SHEET 5 AA1 5 GLU A 123 ARG A 127 1 O ILE A 125 N LEU A 96 SHEET 1 AA2 5 LEU B 73 ARG B 77 0 SHEET 2 AA2 5 THR B 30 LEU B 37 1 N CYS B 33 O PHE B 74 SHEET 3 AA2 5 ASN B 4 PHE B 9 1 N PHE B 9 O VAL B 34 SHEET 4 AA2 5 LYS B 95 GLU B 99 1 O SER B 97 N TRP B 8 SHEET 5 AA2 5 GLU B 123 ARG B 127 1 O ILE B 125 N LEU B 96 SITE 1 AC1 14 TRP A 292 HIS A 355 ARG A 358 PHE A 381 SITE 2 AC1 14 ALA A 388 ILE A 392 ASN A 393 SER A 396 SITE 3 AC1 14 TRP A 397 TRP A 399 LEU A 400 HOH A 713 SITE 4 AC1 14 HOH A 743 ASP B 203 SITE 1 AC2 13 ASP A 203 TRP B 292 HIS B 355 ARG B 358 SITE 2 AC2 13 PHE B 381 ALA B 388 ILE B 392 ASN B 393 SITE 3 AC2 13 SER B 396 TRP B 397 LEU B 400 HOH B 655 SITE 4 AC2 13 HOH B 711 CRYST1 130.551 143.260 76.730 90.00 118.65 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007660 0.000000 0.004185 0.00000 SCALE2 0.000000 0.006980 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014851 0.00000