HEADER HYDROLASE 28-JAN-20 6LUH TITLE HIGH RESOLUTION STRUCTURE OF N(OMEGA)-HYDROXY-L-ARGININE HYDROLASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: N(OMEGA)-HYDROXY-L-ARGININE AMIDINOHYDROLASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: N(OMEGA)-HYDROXY-L-ARGININE AMIDINOHYDROLASE; COMPND 5 SYNONYM: HYDROXYARGINASE; COMPND 6 EC: 3.5.3.25; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES LAVENDULAE; SOURCE 3 ORGANISM_TAXID: 1914; SOURCE 4 ATCC: 11924; SOURCE 5 GENE: DCSB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21 KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.ODA,Y.MATOBA REVDAT 2 29-NOV-23 6LUH 1 REMARK REVDAT 1 02-SEP-20 6LUH 0 JRNL AUTH K.ODA,N.SHIMOTANI,T.KURODA,Y.MATOBA JRNL TITL CRYSTAL STRUCTURE OF AN NOMEGA-HYDROXY-L-ARGININE HYDROLASE JRNL TITL 2 FOUND IN THE D-CYCLOSERINE BIOSYNTHETIC PATHWAY. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 76 506 2020 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 32496212 JRNL DOI 10.1107/S2059798320004908 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1-3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.09 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.950 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 72042 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.930 REMARK 3 FREE R VALUE TEST SET COUNT : 3549 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.0900 - 4.3900 1.00 2839 139 0.1927 0.2195 REMARK 3 2 4.3800 - 3.4800 0.99 2828 128 0.1916 0.2135 REMARK 3 3 3.4800 - 3.0400 0.98 2843 130 0.1943 0.1985 REMARK 3 4 3.0400 - 2.7600 0.98 2754 146 0.2059 0.2251 REMARK 3 5 2.7600 - 2.5600 0.98 2780 134 0.2025 0.2211 REMARK 3 6 2.5600 - 2.4100 0.98 2816 150 0.1925 0.2330 REMARK 3 7 2.4100 - 2.2900 0.97 2770 138 0.1911 0.2232 REMARK 3 8 2.2900 - 2.1900 0.97 2746 155 0.1931 0.2059 REMARK 3 9 2.1900 - 2.1100 0.97 2737 166 0.1832 0.2064 REMARK 3 10 2.1100 - 2.0400 0.97 2765 137 0.1934 0.2412 REMARK 3 11 2.0400 - 1.9700 0.95 2748 132 0.2000 0.2543 REMARK 3 12 1.9700 - 1.9200 0.95 2670 157 0.2129 0.2626 REMARK 3 13 1.9200 - 1.8700 0.96 2751 126 0.2067 0.2451 REMARK 3 14 1.8700 - 1.8200 0.96 2719 149 0.2135 0.2519 REMARK 3 15 1.8200 - 1.7800 0.96 2724 145 0.2211 0.2375 REMARK 3 16 1.7800 - 1.7400 0.96 2710 142 0.2182 0.2866 REMARK 3 17 1.7400 - 1.7100 0.96 2735 144 0.2181 0.2734 REMARK 3 18 1.7100 - 1.6700 0.95 2696 139 0.2069 0.2047 REMARK 3 19 1.6700 - 1.6400 0.95 2735 152 0.2009 0.2477 REMARK 3 20 1.6400 - 1.6200 0.95 2661 146 0.2004 0.2648 REMARK 3 21 1.6200 - 1.5900 0.95 2725 137 0.2140 0.2513 REMARK 3 22 1.5900 - 1.5700 0.95 2675 133 0.2105 0.2569 REMARK 3 23 1.5700 - 1.5400 0.95 2711 129 0.2046 0.2333 REMARK 3 24 1.5400 - 1.5200 0.94 2669 136 0.2176 0.2734 REMARK 3 25 1.5200 - 1.5000 0.94 2686 159 0.2012 0.2485 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.970 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6LUH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1300015481. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUL-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72157 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 44.090 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.10800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.3 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : 0.44900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: SHARP 2.8 REMARK 200 STARTING MODEL: 6LUG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, MAGNESIUM CHLORIDE, PH 8.3, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 20 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 272 REMARK 465 PRO A 273 REMARK 465 LEU A 274 REMARK 465 GLU A 275 REMARK 465 HIS A 276 REMARK 465 HIS A 277 REMARK 465 HIS A 278 REMARK 465 HIS A 279 REMARK 465 HIS A 280 REMARK 465 HIS A 281 REMARK 465 LEU B 309 REMARK 465 GLU B 310 REMARK 465 HIS B 311 REMARK 465 HIS B 312 REMARK 465 HIS B 313 REMARK 465 HIS B 314 REMARK 465 HIS B 315 REMARK 465 HIS B 316 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 521 O HOH B 745 1.92 REMARK 500 OD2 ASP B 198 O HOH B 501 2.05 REMARK 500 O HOH B 759 O HOH B 779 2.09 REMARK 500 NE2 GLN B 57 O HOH B 502 2.16 REMARK 500 OE1 GLU A 178 O HOH A 501 2.17 REMARK 500 O HOH B 630 O HOH B 792 2.18 REMARK 500 O HOH B 537 O HOH B 793 2.18 REMARK 500 O HOH A 529 O HOH A 689 2.18 REMARK 500 O HOH B 594 O HOH B 770 2.18 REMARK 500 O HOH A 501 O HOH A 747 2.18 REMARK 500 O HOH A 560 O HOH A 573 2.19 REMARK 500 O HOH A 781 O HOH A 800 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 502 O HOH B 712 1655 2.15 REMARK 500 O HOH A 743 O HOH B 775 1465 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 48 52.95 -99.04 REMARK 500 ALA A 143 -130.15 -146.09 REMARK 500 LYS A 189 -130.03 59.92 REMARK 500 PRO A 208 45.76 -98.39 REMARK 500 ALA A 209 23.19 -75.34 REMARK 500 ASP B 48 69.52 -100.11 REMARK 500 ALA B 143 -130.78 -141.84 REMARK 500 ARG B 156 -17.55 -154.24 REMARK 500 LYS B 189 -124.14 54.09 REMARK 500 GLU B 241 40.79 78.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 843 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH A 844 DISTANCE = 6.21 ANGSTROMS REMARK 525 HOH B 806 DISTANCE = 6.33 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 77 O REMARK 620 2 HOH A 540 O 78.6 REMARK 620 3 HOH A 548 O 89.9 81.9 REMARK 620 4 HOH A 680 O 90.3 103.2 174.9 REMARK 620 5 HOH A 724 O 96.7 170.0 89.3 85.6 REMARK 620 6 HOH A 783 O 166.3 87.7 88.2 92.8 96.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 86 SG REMARK 620 2 ASP A 109 OD2 106.1 REMARK 620 3 ASP A 113 OD2 105.4 79.8 REMARK 620 4 ASP A 198 OD2 99.0 81.7 152.6 REMARK 620 5 HOH A 549 O 159.4 90.7 88.9 71.3 REMARK 620 6 HOH A 623 O 89.2 164.1 92.2 100.5 75.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 402 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 109 OD1 REMARK 620 2 HIS A 111 ND1 105.5 REMARK 620 3 ASP A 198 OD2 86.4 162.4 REMARK 620 4 ASP A 200 OD1 85.1 99.5 94.2 REMARK 620 5 ASP A 200 OD2 142.0 87.9 90.4 57.3 REMARK 620 6 HOH A 549 O 96.8 88.8 76.8 170.7 119.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 86 SG REMARK 620 2 ASP B 109 OD2 107.8 REMARK 620 3 ASP B 113 OD2 103.9 77.0 REMARK 620 4 ASP B 198 OD2 97.5 82.0 153.7 REMARK 620 5 HOH B 521 O 159.2 91.7 87.3 77.6 REMARK 620 6 HOH B 588 O 88.7 162.9 103.9 91.6 71.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 402 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 109 OD1 REMARK 620 2 HIS B 111 ND1 99.6 REMARK 620 3 ASP B 198 OD2 90.0 168.8 REMARK 620 4 ASP B 200 OD1 81.8 99.4 87.6 REMARK 620 5 ASP B 200 OD2 139.1 89.3 87.2 57.3 REMARK 620 6 HOH B 501 O 140.1 112.2 56.7 114.5 67.0 REMARK 620 7 HOH B 521 O 94.1 93.7 79.8 166.8 125.3 61.5 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6LUG RELATED DB: PDB REMARK 900 6LUG CONTAINS THE SAME PORTEIN DETERMINED BY MN-SAD METHOD. DBREF 6LUH A 1 273 UNP D2Z025 DCSB_STRLA 1 273 DBREF 6LUH B 1 273 UNP D2Z025 DCSB_STRLA 1 273 SEQADV 6LUH LEU A 274 UNP D2Z025 EXPRESSION TAG SEQADV 6LUH GLU A 275 UNP D2Z025 EXPRESSION TAG SEQADV 6LUH HIS A 276 UNP D2Z025 EXPRESSION TAG SEQADV 6LUH HIS A 277 UNP D2Z025 EXPRESSION TAG SEQADV 6LUH HIS A 278 UNP D2Z025 EXPRESSION TAG SEQADV 6LUH HIS A 279 UNP D2Z025 EXPRESSION TAG SEQADV 6LUH HIS A 280 UNP D2Z025 EXPRESSION TAG SEQADV 6LUH HIS A 281 UNP D2Z025 EXPRESSION TAG SEQADV 6LUH LEU B 309 UNP D2Z025 EXPRESSION TAG SEQADV 6LUH GLU B 310 UNP D2Z025 EXPRESSION TAG SEQADV 6LUH HIS B 311 UNP D2Z025 EXPRESSION TAG SEQADV 6LUH HIS B 312 UNP D2Z025 EXPRESSION TAG SEQADV 6LUH HIS B 313 UNP D2Z025 EXPRESSION TAG SEQADV 6LUH HIS B 314 UNP D2Z025 EXPRESSION TAG SEQADV 6LUH HIS B 315 UNP D2Z025 EXPRESSION TAG SEQADV 6LUH HIS B 316 UNP D2Z025 EXPRESSION TAG SEQRES 1 A 281 MET ILE ASP LEU ILE VAL SER GLN GLY ARG VAL ALA ASP SEQRES 2 A 281 ARG ALA ALA TRP MET ILE GLU GLY ALA ALA ARG THR ALA SEQRES 3 A 281 ARG ALA LEU GLU GLU ARG TYR GLY LEU LYS GLY HIS TYR SEQRES 4 A 281 VAL GLY GLU PRO ALA PRO HIS ALA ASP ASP ASP TRP SER SEQRES 5 A 281 VAL ALA LEU PRO GLN ALA ARG GLU THR LEU VAL ALA VAL SEQRES 6 A 281 ARG GLU ALA ALA THR GLU SER ILE LYS GLY ASP ASN LEU SEQRES 7 A 281 THR VAL LEU VAL ASN ASN THR CYS SER VAL SER LEU ALA SEQRES 8 A 281 THR LEU PRO VAL VAL ALA ARG GLU HIS PRO ASP ALA VAL SEQRES 9 A 281 VAL LEU TYR ILE ASP GLY HIS GLY ASP PHE ASN THR PRO SEQRES 10 A 281 GLU THR THR ASP THR GLY TYR LEU GLY GLY MET VAL LEU SEQRES 11 A 281 SER GLY ALA CYS GLY LEU TRP ASP SER GLY HIS GLY ALA SEQRES 12 A 281 GLY LEU ARG PRO GLU GLN ALA VAL LEU VAL GLY SER ARG SEQRES 13 A 281 ASP ILE ASP GLU GLY GLU ARG GLU LEU ILE ARG LYS ALA SEQRES 14 A 281 GLY VAL ARG VAL ILE PRO PRO GLY GLU ALA THR ALA GLN SEQRES 15 A 281 ALA VAL LEU ASP ALA VAL LYS ASP ALA PRO VAL TRP ILE SEQRES 16 A 281 HIS ILE ASP TRP ASP VAL LEU GLU PRO GLY SER ILE PRO SEQRES 17 A 281 ALA ASP TYR THR VAL PRO ASP GLY MET LEU PRO ALA GLN SEQRES 18 A 281 ILE ARG ALA VAL PHE GLU ALA ILE PRO ALA GLU ARG LEU SEQRES 19 A 281 ILE GLY VAL GLU LEU ALA GLU LEU ASN ALA PRO ALA ASP SEQRES 20 A 281 SER GLU ARG ALA GLU GLN ALA VAL ALA VAL ILE LEU ASP SEQRES 21 A 281 MET VAL ALA PRO ALA PHE ASP ALA ALA ALA ALA ARG PRO SEQRES 22 A 281 LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 281 MET ILE ASP LEU ILE VAL SER GLN GLY ARG VAL ALA ASP SEQRES 2 B 281 ARG ALA ALA TRP MET ILE GLU GLY ALA ALA ARG THR ALA SEQRES 3 B 281 ARG ALA LEU GLU GLU ARG TYR GLY LEU LYS GLY HIS TYR SEQRES 4 B 281 VAL GLY GLU PRO ALA PRO HIS ALA ASP ASP ASP TRP SER SEQRES 5 B 281 VAL ALA LEU PRO GLN ALA ARG GLU THR LEU VAL ALA VAL SEQRES 6 B 281 ARG GLU ALA ALA THR GLU SER ILE LYS GLY ASP ASN LEU SEQRES 7 B 281 THR VAL LEU VAL ASN ASN THR CYS SER VAL SER LEU ALA SEQRES 8 B 281 THR LEU PRO VAL VAL ALA ARG GLU HIS PRO ASP ALA VAL SEQRES 9 B 281 VAL LEU TYR ILE ASP GLY HIS GLY ASP PHE ASN THR PRO SEQRES 10 B 281 GLU THR THR ASP THR GLY TYR LEU GLY GLY MET VAL LEU SEQRES 11 B 281 SER GLY ALA CYS GLY LEU TRP ASP SER GLY HIS GLY ALA SEQRES 12 B 281 GLY LEU ARG PRO GLU GLN ALA VAL LEU VAL GLY SER ARG SEQRES 13 B 281 ASP ILE ASP GLU GLY GLU ARG GLU LEU ILE ARG LYS ALA SEQRES 14 B 281 GLY VAL ARG VAL ILE PRO PRO GLY GLU ALA THR ALA GLN SEQRES 15 B 281 ALA VAL LEU ASP ALA VAL LYS ASP ALA PRO VAL TRP ILE SEQRES 16 B 281 HIS ILE ASP TRP ASP VAL LEU GLU PRO GLY SER ILE PRO SEQRES 17 B 281 ALA ASP TYR THR VAL PRO ASP GLY MET LEU PRO ALA GLN SEQRES 18 B 281 ILE ARG ALA VAL PHE GLU ALA ILE PRO ALA GLU ARG LEU SEQRES 19 B 281 ILE GLY VAL GLU LEU ALA GLU LEU ASN ALA PRO ALA ASP SEQRES 20 B 281 SER GLU ARG ALA GLU GLN ALA VAL ALA VAL ILE LEU ASP SEQRES 21 B 281 MET VAL ALA PRO ALA PHE ASP ALA ALA ALA ALA ARG PRO SEQRES 22 B 281 LEU GLU HIS HIS HIS HIS HIS HIS HET MN A 401 1 HET MN A 402 1 HET MG A 403 1 HET MN B 401 1 HET MN B 402 1 HETNAM MN MANGANESE (II) ION HETNAM MG MAGNESIUM ION FORMUL 3 MN 4(MN 2+) FORMUL 5 MG MG 2+ FORMUL 8 HOH *650(H2 O) HELIX 1 AA1 TRP A 17 GLY A 34 1 18 HELIX 2 AA2 ASP A 50 ALA A 58 1 9 HELIX 3 AA3 ALA A 58 GLY A 75 1 18 HELIX 4 AA4 THR A 85 SER A 87 5 3 HELIX 5 AA5 VAL A 88 HIS A 100 1 13 HELIX 6 AA6 TYR A 124 GLY A 127 5 4 HELIX 7 AA7 MET A 128 CYS A 134 1 7 HELIX 8 AA8 ARG A 146 GLU A 148 5 3 HELIX 9 AA9 ASP A 159 GLY A 170 1 12 HELIX 10 AB1 PRO A 175 ALA A 179 5 5 HELIX 11 AB2 THR A 180 LYS A 189 1 10 HELIX 12 AB3 ASP A 200 LEU A 202 5 3 HELIX 13 AB4 LEU A 218 ILE A 229 1 12 HELIX 14 AB5 PRO A 230 GLU A 232 5 3 HELIX 15 AB6 SER A 248 ALA A 271 1 24 HELIX 16 AB7 TRP B 17 GLY B 34 1 18 HELIX 17 AB8 ASP B 50 ALA B 58 1 9 HELIX 18 AB9 ALA B 58 GLY B 75 1 18 HELIX 19 AC1 THR B 85 SER B 87 5 3 HELIX 20 AC2 VAL B 88 HIS B 100 1 13 HELIX 21 AC3 TYR B 124 GLY B 127 5 4 HELIX 22 AC4 MET B 128 CYS B 134 1 7 HELIX 23 AC5 ARG B 146 GLU B 148 5 3 HELIX 24 AC6 ASP B 159 GLY B 170 1 12 HELIX 25 AC7 PRO B 175 ALA B 179 5 5 HELIX 26 AC8 THR B 180 LYS B 189 1 10 HELIX 27 AC9 ASP B 200 LEU B 202 5 3 HELIX 28 AD1 LEU B 218 ILE B 229 1 12 HELIX 29 AD2 PRO B 230 GLU B 232 5 3 HELIX 30 AD3 SER B 248 ARG B 272 1 25 SHEET 1 AA1 8 HIS A 38 VAL A 40 0 SHEET 2 AA1 8 ILE A 2 SER A 7 1 N VAL A 6 O HIS A 38 SHEET 3 AA1 8 LEU A 78 ASN A 83 1 O VAL A 80 N ASP A 3 SHEET 4 AA1 8 LEU A 234 ALA A 240 1 O VAL A 237 N LEU A 81 SHEET 5 AA1 8 VAL A 193 ASP A 198 1 N VAL A 193 O ILE A 235 SHEET 6 AA1 8 VAL A 104 ILE A 108 1 N ILE A 108 O HIS A 196 SHEET 7 AA1 8 ALA A 150 VAL A 153 1 O VAL A 151 N TYR A 107 SHEET 8 AA1 8 ARG A 172 ILE A 174 1 O ILE A 174 N LEU A 152 SHEET 1 AA2 8 HIS B 38 VAL B 40 0 SHEET 2 AA2 8 ILE B 2 SER B 7 1 N VAL B 6 O VAL B 40 SHEET 3 AA2 8 LEU B 78 ASN B 83 1 O VAL B 80 N ASP B 3 SHEET 4 AA2 8 LEU B 234 ALA B 240 1 O LEU B 239 N LEU B 81 SHEET 5 AA2 8 VAL B 193 ASP B 198 1 N VAL B 193 O ILE B 235 SHEET 6 AA2 8 VAL B 104 ILE B 108 1 N ILE B 108 O HIS B 196 SHEET 7 AA2 8 ALA B 150 VAL B 153 1 O VAL B 151 N TYR B 107 SHEET 8 AA2 8 ARG B 172 ILE B 174 1 O ILE B 174 N LEU B 152 LINK O ASN A 77 MG MG A 403 1555 1555 2.19 LINK SG CYS A 86 MN MN A 401 1555 1555 2.51 LINK OD2 ASP A 109 MN MN A 401 1555 1555 2.19 LINK OD1 ASP A 109 MN MN A 402 1555 1555 2.05 LINK ND1 HIS A 111 MN MN A 402 1555 1555 2.30 LINK OD2 ASP A 113 MN MN A 401 1555 1555 2.27 LINK OD2 ASP A 198 MN MN A 401 1555 1555 2.20 LINK OD2 ASP A 198 MN MN A 402 1555 1555 2.18 LINK OD1 ASP A 200 MN MN A 402 1555 1555 2.39 LINK OD2 ASP A 200 MN MN A 402 1555 1555 2.23 LINK MN MN A 401 O HOH A 549 1555 1555 2.37 LINK MN MN A 401 O HOH A 623 1555 1555 2.22 LINK MN MN A 402 O HOH A 549 1555 1555 2.11 LINK MG MG A 403 O HOH A 540 1555 1555 2.21 LINK MG MG A 403 O HOH A 548 1555 1555 2.18 LINK MG MG A 403 O HOH A 680 1555 1555 2.21 LINK MG MG A 403 O HOH A 724 1555 1555 2.22 LINK MG MG A 403 O HOH A 783 1555 1555 2.02 LINK SG CYS B 86 MN MN B 401 1555 1555 2.47 LINK OD2 ASP B 109 MN MN B 401 1555 1555 2.19 LINK OD1 ASP B 109 MN MN B 402 1555 1555 2.20 LINK ND1 HIS B 111 MN MN B 402 1555 1555 2.25 LINK OD2 ASP B 113 MN MN B 401 1555 1555 2.12 LINK OD2 ASP B 198 MN MN B 401 1555 1555 2.33 LINK OD2 ASP B 198 MN MN B 402 1555 1555 2.20 LINK OD1 ASP B 200 MN MN B 402 1555 1555 2.38 LINK OD2 ASP B 200 MN MN B 402 1555 1555 2.12 LINK MN MN B 401 O HOH B 521 1555 1555 2.22 LINK MN MN B 401 O HOH B 588 1555 1555 2.21 LINK MN MN B 402 O HOH B 501 1555 1555 2.11 LINK MN MN B 402 O HOH B 521 1555 1555 2.25 SITE 1 AC1 7 CYS A 86 ASP A 109 ASP A 113 ASP A 198 SITE 2 AC1 7 MN A 402 HOH A 549 HOH A 623 SITE 1 AC2 6 ASP A 109 HIS A 111 ASP A 198 ASP A 200 SITE 2 AC2 6 MN A 401 HOH A 549 SITE 1 AC3 7 ASN A 77 ILE A 235 HOH A 540 HOH A 548 SITE 2 AC3 7 HOH A 680 HOH A 724 HOH A 783 SITE 1 AC4 8 CYS B 86 ASP B 109 ASP B 113 ASP B 198 SITE 2 AC4 8 MN B 402 HOH B 501 HOH B 521 HOH B 588 SITE 1 AC5 7 ASP B 109 HIS B 111 ASP B 198 ASP B 200 SITE 2 AC5 7 MN B 401 HOH B 501 HOH B 521 CRYST1 46.326 47.057 59.261 83.57 84.63 70.13 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021586 -0.007802 -0.001365 0.00000 SCALE2 0.000000 0.022596 -0.001942 0.00000 SCALE3 0.000000 0.000000 0.017011 0.00000