HEADER RNA BINDING PROTEIN 04-FEB-20 6LVR TITLE CRYSTAL STRUCTURE OF THE PPR DOMAIN OF ARABIDOPSIS THALIANA PROTEIN- TITLE 2 ONLY RNASE P 1 (PRORP1) IN COMPLEX WITH TRNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEINACEOUS RNASE P 1, CHLOROPLASTIC/MITOCHONDRIAL; COMPND 3 CHAIN: C, A; COMPND 4 SYNONYM: PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN AT2G32230; COMPND 5 EC: 3.1.26.5; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: YEAST PHENYLALANINE TRNA; COMPND 10 CHAIN: D, B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: PRORP1, AT2G32230, F22D22.2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 10 ORGANISM_TAXID: 4932 KEYWDS PROTEIN-ONLY RNASE P TRNA PROCESSING TRNA COMPLEX PENTATRICOPEPTIDE KEYWDS 2 REPEAT CONVERGENT EVOLUTION, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.TERAMOTO,T.M.T.HALL REVDAT 3 29-NOV-23 6LVR 1 REMARK REVDAT 2 23-DEC-20 6LVR 1 JRNL REVDAT 1 12-AUG-20 6LVR 0 JRNL AUTH T.TERAMOTO,K.J.KAITANY,Y.KAKUTA,M.KIMURA,C.A.FIERKE, JRNL AUTH 2 T.M.T.HALL JRNL TITL PENTATRICOPEPTIDE REPEATS OF PROTEIN-ONLY RNASE P USE A JRNL TITL 2 DISTINCT MODE TO RECOGNIZE CONSERVED BASES AND STRUCTURAL JRNL TITL 3 ELEMENTS OF PRE-TRNA. JRNL REF NUCLEIC ACIDS RES. V. 48 11815 2020 JRNL REFN ESSN 1362-4962 JRNL PMID 32719843 JRNL DOI 10.1093/NAR/GKAA627 REMARK 2 REMARK 2 RESOLUTION. 2.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.31 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 41250 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.059 REMARK 3 FREE R VALUE TEST SET COUNT : 2087 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.92 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2854 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3570 REMARK 3 BIN FREE R VALUE SET COUNT : 148 REMARK 3 BIN FREE R VALUE : 0.3860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3055 REMARK 3 NUCLEIC ACID ATOMS : 3136 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 35 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 120.6 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.22300 REMARK 3 B22 (A**2) : -1.87700 REMARK 3 B33 (A**2) : 1.65500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.295 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.923 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6603 ; 0.027 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4454 ; 0.028 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9626 ; 1.606 ; 1.615 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10507 ; 2.249 ; 2.073 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 383 ; 4.302 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 167 ;33.575 ;22.814 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 592 ;19.879 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;25.430 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 965 ; 0.124 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5155 ; 0.023 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1311 ; 0.015 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1240 ; 0.175 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 50 ; 0.232 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2864 ; 0.209 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 134 ; 0.177 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1544 ; 1.137 ; 7.136 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1543 ; 1.192 ; 7.135 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1923 ; 1.918 ;10.683 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1924 ; 1.952 ;10.685 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 5059 ; 1.818 ;16.296 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 5058 ; 2.081 ;16.294 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 7703 ; 3.068 ;24.599 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 7703 ; 3.067 ;24.599 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 11057 ;15.104 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 6LVR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1300015485. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42492 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.560 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4G24, 1EHZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5 M SODIUM CITRATE, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 42.24000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 65.85050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.24000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 65.85050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER C 83 REMARK 465 SER C 84 REMARK 465 ARG C 85 REMARK 465 LYS C 86 REMARK 465 ALA C 87 REMARK 465 LYS C 88 REMARK 465 LYS C 89 REMARK 465 LYS C 90 REMARK 465 ALA C 91 REMARK 465 ILE C 92 REMARK 465 GLN C 93 REMARK 465 ALA C 151 REMARK 465 SER C 152 REMARK 465 GLU C 294 REMARK 465 SER A 83 REMARK 465 SER A 84 REMARK 465 ARG A 85 REMARK 465 LYS A 86 REMARK 465 ALA A 87 REMARK 465 LYS A 88 REMARK 465 LYS A 89 REMARK 465 LYS A 90 REMARK 465 ALA A 91 REMARK 465 ILE A 92 REMARK 465 GLN A 93 REMARK 465 GLN A 94 REMARK 465 ALA A 151 REMARK 465 SER A 152 REMARK 465 GLU A 294 REMARK 465 A D 73 REMARK 465 C D 74 REMARK 465 C D 75 REMARK 465 A D 76 REMARK 465 A B 73 REMARK 465 C B 74 REMARK 465 C B 75 REMARK 465 A B 76 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 G D 1 P G D 1 OP3 -0.127 REMARK 500 G B 1 P G B 1 OP3 -0.127 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP C 112 85.85 -68.04 REMARK 500 ASN C 261 72.60 -119.65 REMARK 500 ASN A 175 -160.13 -114.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHORS SUBSTITUTED SASS FOR ORIGINAL EAATESSP SEQUENCE. DBREF 6LVR C 84 294 UNP Q66GI4 PRRP1_ARATH 84 294 DBREF 6LVR A 84 294 UNP Q66GI4 PRRP1_ARATH 84 294 DBREF 6LVR D 1 76 PDB 6LVR 6LVR 1 76 DBREF 6LVR B 1 76 PDB 6LVR 6LVR 1 76 SEQADV 6LVR SER C 83 UNP Q66GI4 EXPRESSION TAG SEQADV 6LVR SER C 146 UNP Q66GI4 GLU 146 SEE SEQUENCE DETAILS SEQADV 6LVR C UNP Q66GI4 ALA 148 SEE SEQUENCE DETAILS SEQADV 6LVR C UNP Q66GI4 THR 149 SEE SEQUENCE DETAILS SEQADV 6LVR C UNP Q66GI4 GLU 150 SEE SEQUENCE DETAILS SEQADV 6LVR C UNP Q66GI4 SER 151 SEE SEQUENCE DETAILS SEQADV 6LVR SER C 153 UNP Q66GI4 PRO 153 SEE SEQUENCE DETAILS SEQADV 6LVR ASN C 266 UNP Q66GI4 TYR 266 ENGINEERED MUTATION SEQADV 6LVR GLN C 284 UNP Q66GI4 PHE 284 ENGINEERED MUTATION SEQADV 6LVR GLN C 291 UNP Q66GI4 PHE 291 ENGINEERED MUTATION SEQADV 6LVR SER A 83 UNP Q66GI4 EXPRESSION TAG SEQADV 6LVR SER A 146 UNP Q66GI4 GLU 146 SEE SEQUENCE DETAILS SEQADV 6LVR A UNP Q66GI4 ALA 148 SEE SEQUENCE DETAILS SEQADV 6LVR A UNP Q66GI4 THR 149 SEE SEQUENCE DETAILS SEQADV 6LVR A UNP Q66GI4 GLU 150 SEE SEQUENCE DETAILS SEQADV 6LVR A UNP Q66GI4 SER 151 SEE SEQUENCE DETAILS SEQADV 6LVR SER A 153 UNP Q66GI4 PRO 153 SEE SEQUENCE DETAILS SEQADV 6LVR ASN A 266 UNP Q66GI4 TYR 266 ENGINEERED MUTATION SEQADV 6LVR GLN A 284 UNP Q66GI4 PHE 284 ENGINEERED MUTATION SEQADV 6LVR GLN A 291 UNP Q66GI4 PHE 291 ENGINEERED MUTATION SEQRES 1 C 208 SER SER ARG LYS ALA LYS LYS LYS ALA ILE GLN GLN SER SEQRES 2 C 208 PRO GLU ALA LEU LEU LYS GLN LYS LEU ASP MET CYS SER SEQRES 3 C 208 LYS LYS GLY ASP VAL LEU GLU ALA LEU ARG LEU TYR ASP SEQRES 4 C 208 GLU ALA ARG ARG ASN GLY VAL GLN LEU SER GLN TYR HIS SEQRES 5 C 208 TYR ASN VAL LEU LEU TYR VAL CYS SER LEU ALA SER ALA SEQRES 6 C 208 SER SER ASN PRO GLY LEU SER ARG GLY PHE ASP ILE PHE SEQRES 7 C 208 LYS GLN MET ILE VAL ASP LYS VAL VAL PRO ASN GLU ALA SEQRES 8 C 208 THR PHE THR ASN GLY ALA ARG LEU ALA VAL ALA LYS ASP SEQRES 9 C 208 ASP PRO GLU MET ALA PHE ASP MET VAL LYS GLN MET LYS SEQRES 10 C 208 ALA PHE GLY ILE GLN PRO ARG LEU ARG SER TYR GLY PRO SEQRES 11 C 208 ALA LEU PHE GLY PHE CYS ARG LYS GLY ASP ALA ASP LYS SEQRES 12 C 208 ALA TYR GLU VAL ASP ALA HIS MET VAL GLU SER GLU VAL SEQRES 13 C 208 VAL PRO GLU GLU PRO GLU LEU ALA ALA LEU LEU LYS VAL SEQRES 14 C 208 SER MET ASP THR LYS ASN ALA ASP LYS VAL ASN LYS THR SEQRES 15 C 208 LEU GLN ARG LEU ARG ASP LEU VAL ARG GLN VAL SER LYS SEQRES 16 C 208 SER THR GLN ASP MET ILE GLU GLU TRP GLN LYS SER GLU SEQRES 1 A 208 SER SER ARG LYS ALA LYS LYS LYS ALA ILE GLN GLN SER SEQRES 2 A 208 PRO GLU ALA LEU LEU LYS GLN LYS LEU ASP MET CYS SER SEQRES 3 A 208 LYS LYS GLY ASP VAL LEU GLU ALA LEU ARG LEU TYR ASP SEQRES 4 A 208 GLU ALA ARG ARG ASN GLY VAL GLN LEU SER GLN TYR HIS SEQRES 5 A 208 TYR ASN VAL LEU LEU TYR VAL CYS SER LEU ALA SER ALA SEQRES 6 A 208 SER SER ASN PRO GLY LEU SER ARG GLY PHE ASP ILE PHE SEQRES 7 A 208 LYS GLN MET ILE VAL ASP LYS VAL VAL PRO ASN GLU ALA SEQRES 8 A 208 THR PHE THR ASN GLY ALA ARG LEU ALA VAL ALA LYS ASP SEQRES 9 A 208 ASP PRO GLU MET ALA PHE ASP MET VAL LYS GLN MET LYS SEQRES 10 A 208 ALA PHE GLY ILE GLN PRO ARG LEU ARG SER TYR GLY PRO SEQRES 11 A 208 ALA LEU PHE GLY PHE CYS ARG LYS GLY ASP ALA ASP LYS SEQRES 12 A 208 ALA TYR GLU VAL ASP ALA HIS MET VAL GLU SER GLU VAL SEQRES 13 A 208 VAL PRO GLU GLU PRO GLU LEU ALA ALA LEU LEU LYS VAL SEQRES 14 A 208 SER MET ASP THR LYS ASN ALA ASP LYS VAL ASN LYS THR SEQRES 15 A 208 LEU GLN ARG LEU ARG ASP LEU VAL ARG GLN VAL SER LYS SEQRES 16 A 208 SER THR GLN ASP MET ILE GLU GLU TRP GLN LYS SER GLU SEQRES 1 D 76 G C G G A U U U A 2MG C U C SEQRES 2 D 76 A G H2U H2U G G G A G A G C M2G SEQRES 3 D 76 C C A G A OMC U OMG A A YYG A PSU SEQRES 4 D 76 5MC U G G A G 7MG U C 5MC U G U SEQRES 5 D 76 G 5MU PSU C G 1MA U C C A C A G SEQRES 6 D 76 A A U U C G C A C C A SEQRES 1 B 76 G C G G A U U U A 2MG C U C SEQRES 2 B 76 A G H2U H2U G G G A G A G C M2G SEQRES 3 B 76 C C A G A OMC U OMG A A YYG A PSU SEQRES 4 B 76 5MC U G G A G 7MG U C 5MC U G U SEQRES 5 B 76 G 5MU PSU C G 1MA U C C A C A G SEQRES 6 B 76 A A U U C G C A C C A HET 2MG D 10 24 HET H2U D 16 20 HET H2U D 17 20 HET M2G D 26 25 HET OMC D 32 21 HET OMG D 34 24 HET YYG D 37 39 HET PSU D 39 20 HET 5MC D 40 21 HET 7MG D 46 24 HET 5MC D 49 21 HET 5MU D 54 21 HET PSU D 55 20 HET 1MA D 58 23 HET 2MG B 10 24 HET H2U B 16 20 HET H2U B 17 20 HET M2G B 26 25 HET OMC B 32 21 HET OMG B 34 24 HET YYG B 37 39 HET PSU B 39 20 HET 5MC B 40 21 HET 7MG B 46 24 HET 5MC B 49 21 HET 5MU B 54 21 HET PSU B 55 20 HET 1MA B 58 23 HETNAM 2MG 2N-METHYLGUANOSINE-5'-MONOPHOSPHATE HETNAM H2U 5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE HETNAM M2G N2-DIMETHYLGUANOSINE-5'-MONOPHOSPHATE HETNAM OMC O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE HETNAM OMG O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE HETNAM YYG 4-(3-[5-O-PHOSPHONORIBOFURANOSYL]-4,6-DIMETHYL-8-OXO-4, HETNAM 2 YYG 8-DIHYDRO-3H-1,3,4,5,7A-PENTAAZA-S-INDACEN-YLAMINO- HETNAM 3 YYG BUTYRIC ACID METHYL ESTER HETNAM PSU PSEUDOURIDINE-5'-MONOPHOSPHATE HETNAM 5MC 5-METHYLCYTIDINE-5'-MONOPHOSPHATE HETNAM 7MG 7N-METHYL-8-HYDROGUANOSINE-5'-MONOPHOSPHATE HETNAM 5MU 5-METHYLURIDINE 5'-MONOPHOSPHATE HETNAM 1MA 6-HYDRO-1-METHYLADENOSINE-5'-MONOPHOSPHATE HETSYN YYG MODIFIED GUANOSINE-5'-PHOSPHATE FORMUL 3 2MG 2(C11 H16 N5 O8 P) FORMUL 3 H2U 4(C9 H15 N2 O9 P) FORMUL 3 M2G 2(C12 H18 N5 O8 P) FORMUL 3 OMC 2(C10 H16 N3 O8 P) FORMUL 3 OMG 2(C11 H16 N5 O8 P) FORMUL 3 YYG 2(C21 H29 N6 O12 P) FORMUL 3 PSU 4(C9 H13 N2 O9 P) FORMUL 3 5MC 4(C10 H16 N3 O8 P) FORMUL 3 7MG 2(C11 H18 N5 O8 P) FORMUL 3 5MU 2(C10 H15 N2 O9 P) FORMUL 3 1MA 2(C11 H16 N5 O7 P) FORMUL 5 HOH *35(H2 O) HELIX 1 AA1 SER C 95 GLY C 111 1 17 HELIX 2 AA2 ASP C 112 ASN C 126 1 15 HELIX 3 AA3 SER C 131 LEU C 144 1 14 HELIX 4 AA4 PRO C 155 ASP C 170 1 16 HELIX 5 AA5 ASN C 175 LYS C 189 1 15 HELIX 6 AA6 ASP C 191 PHE C 205 1 15 HELIX 7 AA7 ARG C 210 GLY C 225 1 16 HELIX 8 AA8 ASP C 226 SER C 240 1 15 HELIX 9 AA9 GLU C 245 THR C 259 1 15 HELIX 10 AB1 ASN C 261 VAL C 276 1 16 HELIX 11 AB2 SER C 280 SER C 293 1 14 HELIX 12 AB3 PRO A 96 GLY A 111 1 16 HELIX 13 AB4 ASP A 112 GLY A 127 1 16 HELIX 14 AB5 SER A 131 CYS A 142 1 12 HELIX 15 AB6 PRO A 155 ASP A 170 1 16 HELIX 16 AB7 ASN A 175 LYS A 189 1 15 HELIX 17 AB8 ASP A 191 PHE A 205 1 15 HELIX 18 AB9 ARG A 210 LYS A 224 1 15 HELIX 19 AC1 ASP A 226 SER A 240 1 15 HELIX 20 AC2 GLU A 245 THR A 259 1 15 HELIX 21 AC3 ASN A 261 ASP A 274 1 14 HELIX 22 AC4 SER A 280 SER A 293 1 14 LINK O3' A D 9 P 2MG D 10 1555 1555 1.61 LINK O3' 2MG D 10 P C D 11 1555 1555 1.61 LINK O3' G D 15 P H2U D 16 1555 1555 1.61 LINK O3' H2U D 16 P H2U D 17 1555 1555 1.61 LINK O3' H2U D 17 P G D 18 1555 1555 1.61 LINK O3' C D 25 P M2G D 26 1555 1555 1.61 LINK O3' M2G D 26 P C D 27 1555 1555 1.61 LINK O3' A D 31 P OMC D 32 1555 1555 1.61 LINK O3' OMC D 32 P U D 33 1555 1555 1.61 LINK O3' U D 33 P OMG D 34 1555 1555 1.61 LINK O3' OMG D 34 P A D 35 1555 1555 1.61 LINK O3' A D 36 P YYG D 37 1555 1555 1.61 LINK O3' YYG D 37 P A D 38 1555 1555 1.61 LINK O3' A D 38 P PSU D 39 1555 1555 1.61 LINK O3' PSU D 39 P 5MC D 40 1555 1555 1.61 LINK O3' 5MC D 40 P U D 41 1555 1555 1.61 LINK O3' G D 45 P 7MG D 46 1555 1555 1.61 LINK O3' 7MG D 46 P U D 47 1555 1555 1.61 LINK O3' C D 48 P 5MC D 49 1555 1555 1.61 LINK O3' 5MC D 49 P U D 50 1555 1555 1.61 LINK O3' G D 53 P 5MU D 54 1555 1555 1.61 LINK O3' 5MU D 54 P PSU D 55 1555 1555 1.61 LINK O3' PSU D 55 P C D 56 1555 1555 1.61 LINK O3' G D 57 P 1MA D 58 1555 1555 1.61 LINK O3' 1MA D 58 P U D 59 1555 1555 1.61 LINK O3' A B 9 P 2MG B 10 1555 1555 1.61 LINK O3' 2MG B 10 P C B 11 1555 1555 1.61 LINK O3' G B 15 P H2U B 16 1555 1555 1.61 LINK O3' H2U B 16 P H2U B 17 1555 1555 1.61 LINK O3' H2U B 17 P G B 18 1555 1555 1.61 LINK O3' C B 25 P M2G B 26 1555 1555 1.61 LINK O3' M2G B 26 P C B 27 1555 1555 1.61 LINK O3' A B 31 P OMC B 32 1555 1555 1.61 LINK O3' OMC B 32 P U B 33 1555 1555 1.61 LINK O3' U B 33 P OMG B 34 1555 1555 1.61 LINK O3' OMG B 34 P A B 35 1555 1555 1.61 LINK O3' A B 36 P YYG B 37 1555 1555 1.61 LINK O3' YYG B 37 P A B 38 1555 1555 1.61 LINK O3' A B 38 P PSU B 39 1555 1555 1.61 LINK O3' PSU B 39 P 5MC B 40 1555 1555 1.61 LINK O3' 5MC B 40 P U B 41 1555 1555 1.61 LINK O3' G B 45 P 7MG B 46 1555 1555 1.61 LINK O3' 7MG B 46 P U B 47 1555 1555 1.61 LINK O3' C B 48 P 5MC B 49 1555 1555 1.61 LINK O3' 5MC B 49 P U B 50 1555 1555 1.61 LINK O3' G B 53 P 5MU B 54 1555 1555 1.61 LINK O3' 5MU B 54 P PSU B 55 1555 1555 1.61 LINK O3' PSU B 55 P C B 56 1555 1555 1.61 LINK O3' G B 57 P 1MA B 58 1555 1555 1.61 LINK O3' 1MA B 58 P U B 59 1555 1555 1.61 CRYST1 84.480 131.701 155.556 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011837 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007593 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006429 0.00000