HEADER DNA BINDING PROTEIN/DNA 07-FEB-20 6LWB TITLE CRYSTAL STRUCTURE OF HUMAN NEIL1(P2G, E3Q, R242) BOUND TO DUPLEX DNA TITLE 2 CONTAINING 5-HYDROXYURACIL (5-OHU) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDONUCLEASE 8-LIKE 1; COMPND 3 CHAIN: A, D, G; COMPND 4 SYNONYM: DNA GLYCOSYLASE/AP LYASE NEIL1,DNA-(APURINIC OR APYRIMIDINIC COMPND 5 SITE) LYASE NEIL1,ENDONUCLEASE VIII-LIKE 1,FPG1,NEI HOMOLOG 1,NEH1, COMPND 6 NEI-LIKE PROTEIN 1; COMPND 7 EC: 3.2.2.-,4.2.99.18; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: DNA (5'-D(*CP*GP*TP*CP*CP*AP*(OHU)P*GP*TP*CP*TP*AP*C)-3'); COMPND 12 CHAIN: B, E, H; COMPND 13 ENGINEERED: YES; COMPND 14 OTHER_DETAILS: OLIGO DNA CONTAINING OHU; COMPND 15 MOL_ID: 3; COMPND 16 MOLECULE: DNA (5'-D(*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*G)-3'); COMPND 17 CHAIN: C, F, I; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NEIL1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 11 ORGANISM_TAXID: 562; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 15 ORGANISM_TAXID: 562 KEYWDS BASE LESION, OXIDATIVE DNA DAMAGE, DNA REPAIR, DNA BINDING PROTEIN- KEYWDS 2 DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.H.LIU,J.ZHANG,C.X.ZHU,X.X.ZHANG,Y.Q.GAO,C.Q.YI REVDAT 3 29-NOV-23 6LWB 1 REMARK REVDAT 2 14-JUL-21 6LWB 1 JRNL REVDAT 1 09-JUN-21 6LWB 0 JRNL AUTH M.LIU,J.ZHANG,C.ZHU,X.ZHANG,W.XIAO,Y.YAN,L.LIU,H.ZENG, JRNL AUTH 2 Y.Q.GAO,C.YI JRNL TITL DNA REPAIR GLYCOSYLASE HNEIL1 TRIAGES DAMAGED BASES VIA JRNL TITL 2 COMPETING INTERACTION MODES. JRNL REF NAT COMMUN V. 12 4108 2021 JRNL REFN ESSN 2041-1723 JRNL PMID 34226550 JRNL DOI 10.1038/S41467-021-24431-Y REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 42812 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2274 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.62 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3031 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.3090 REMARK 3 BIN FREE R VALUE SET COUNT : 161 REMARK 3 BIN FREE R VALUE : 0.3420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5735 REMARK 3 NUCLEIC ACID ATOMS : 1575 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 77.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.83000 REMARK 3 B22 (A**2) : -2.06000 REMARK 3 B33 (A**2) : 3.89000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.424 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.277 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.220 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 20.102 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7649 ; 0.010 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 6326 ; 0.003 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10643 ; 1.542 ; 1.542 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14554 ; 1.337 ; 1.781 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 741 ;12.443 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 344 ;33.730 ;19.797 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 897 ;16.632 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 66 ;21.555 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 905 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7756 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1901 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 290 REMARK 3 ORIGIN FOR THE GROUP (A): 8.614 117.721 204.754 REMARK 3 T TENSOR REMARK 3 T11: 0.0382 T22: 0.0427 REMARK 3 T33: 0.1436 T12: -0.0020 REMARK 3 T13: -0.0452 T23: -0.0361 REMARK 3 L TENSOR REMARK 3 L11: 2.8401 L22: 6.5008 REMARK 3 L33: 1.7050 L12: 2.1982 REMARK 3 L13: -0.1251 L23: -1.8499 REMARK 3 S TENSOR REMARK 3 S11: -0.2174 S12: 0.1848 S13: -0.0760 REMARK 3 S21: -0.3147 S22: 0.2824 S23: 0.4540 REMARK 3 S31: -0.0350 S32: -0.0789 S33: -0.0649 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 13 REMARK 3 ORIGIN FOR THE GROUP (A): 1.194 124.551 188.627 REMARK 3 T TENSOR REMARK 3 T11: 0.4397 T22: 0.3702 REMARK 3 T33: 0.4222 T12: -0.0328 REMARK 3 T13: -0.1027 T23: 0.0547 REMARK 3 L TENSOR REMARK 3 L11: 9.4990 L22: 2.7382 REMARK 3 L33: 3.5391 L12: -2.0108 REMARK 3 L13: 3.3246 L23: -0.4523 REMARK 3 S TENSOR REMARK 3 S11: 0.3107 S12: 0.7085 S13: -0.0648 REMARK 3 S21: -0.7263 S22: -0.0585 S23: 0.2213 REMARK 3 S31: -0.0122 S32: -0.3232 S33: -0.2522 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 13 REMARK 3 ORIGIN FOR THE GROUP (A): -3.863 127.170 189.277 REMARK 3 T TENSOR REMARK 3 T11: 0.3691 T22: 0.4569 REMARK 3 T33: 0.3668 T12: -0.0546 REMARK 3 T13: -0.2868 T23: -0.0208 REMARK 3 L TENSOR REMARK 3 L11: 6.3928 L22: 9.9901 REMARK 3 L33: 4.5095 L12: -2.2531 REMARK 3 L13: -0.5159 L23: -2.7971 REMARK 3 S TENSOR REMARK 3 S11: 0.0382 S12: -0.1583 S13: 0.2655 REMARK 3 S21: -0.3824 S22: 0.1545 S23: 0.0032 REMARK 3 S31: -0.3982 S32: 0.4838 S33: -0.1927 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 2 D 290 REMARK 3 ORIGIN FOR THE GROUP (A): 29.420 100.754 220.520 REMARK 3 T TENSOR REMARK 3 T11: 0.0915 T22: 0.0942 REMARK 3 T33: 0.0860 T12: 0.0593 REMARK 3 T13: -0.0337 T23: 0.0094 REMARK 3 L TENSOR REMARK 3 L11: 5.4409 L22: 4.6394 REMARK 3 L33: 3.7282 L12: -2.6407 REMARK 3 L13: -0.1906 L23: 0.5349 REMARK 3 S TENSOR REMARK 3 S11: -0.2626 S12: -0.2871 S13: 0.4086 REMARK 3 S21: 0.3633 S22: 0.2648 S23: -0.1739 REMARK 3 S31: -0.1511 S32: 0.1474 S33: -0.0022 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 1 E 13 REMARK 3 ORIGIN FOR THE GROUP (A): 36.020 91.383 235.197 REMARK 3 T TENSOR REMARK 3 T11: 0.4428 T22: 0.5419 REMARK 3 T33: 0.2596 T12: 0.0880 REMARK 3 T13: -0.0276 T23: -0.0492 REMARK 3 L TENSOR REMARK 3 L11: 8.5568 L22: 4.1267 REMARK 3 L33: 3.1613 L12: 1.8938 REMARK 3 L13: 2.7421 L23: -0.8288 REMARK 3 S TENSOR REMARK 3 S11: -0.1097 S12: -0.7266 S13: -0.1668 REMARK 3 S21: 0.5922 S22: 0.1790 S23: -0.1705 REMARK 3 S31: 0.2472 S32: 0.1840 S33: -0.0693 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 1 F 13 REMARK 3 ORIGIN FOR THE GROUP (A): 40.700 93.435 237.478 REMARK 3 T TENSOR REMARK 3 T11: 0.4077 T22: 0.3682 REMARK 3 T33: 0.2891 T12: 0.2019 REMARK 3 T13: -0.1803 T23: -0.0817 REMARK 3 L TENSOR REMARK 3 L11: 9.7008 L22: 4.5883 REMARK 3 L33: 11.1284 L12: 1.5415 REMARK 3 L13: -1.4302 L23: 0.2380 REMARK 3 S TENSOR REMARK 3 S11: -0.0395 S12: -0.6741 S13: 0.3759 REMARK 3 S21: 0.9536 S22: 0.3220 S23: 0.2570 REMARK 3 S31: 0.1375 S32: 0.1590 S33: -0.2825 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : G 2 G 289 REMARK 3 ORIGIN FOR THE GROUP (A): 42.510 99.475 173.311 REMARK 3 T TENSOR REMARK 3 T11: 0.7769 T22: 0.6130 REMARK 3 T33: 0.2895 T12: 0.1302 REMARK 3 T13: 0.0125 T23: 0.1666 REMARK 3 L TENSOR REMARK 3 L11: 6.1352 L22: 1.8512 REMARK 3 L33: 6.1648 L12: -0.5196 REMARK 3 L13: 3.5518 L23: -0.4026 REMARK 3 S TENSOR REMARK 3 S11: 0.0109 S12: -0.0485 S13: -0.1004 REMARK 3 S21: -0.0580 S22: -0.0769 S23: -0.0147 REMARK 3 S31: -0.0010 S32: 0.4550 S33: 0.0660 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1 H 13 REMARK 3 ORIGIN FOR THE GROUP (A): 36.957 115.252 168.368 REMARK 3 T TENSOR REMARK 3 T11: 0.7321 T22: 0.7616 REMARK 3 T33: 0.5084 T12: 0.0136 REMARK 3 T13: -0.0253 T23: 0.0100 REMARK 3 L TENSOR REMARK 3 L11: 9.1160 L22: 1.8377 REMARK 3 L33: 4.6090 L12: -0.5051 REMARK 3 L13: -2.9091 L23: 0.2007 REMARK 3 S TENSOR REMARK 3 S11: 0.0467 S12: 0.1846 S13: 0.5934 REMARK 3 S21: -0.2178 S22: -0.0132 S23: 0.0293 REMARK 3 S31: -0.1159 S32: 0.1018 S33: -0.0335 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : I 1 I 13 REMARK 3 ORIGIN FOR THE GROUP (A): 32.472 116.520 170.848 REMARK 3 T TENSOR REMARK 3 T11: 0.6348 T22: 0.7407 REMARK 3 T33: 0.3464 T12: 0.0471 REMARK 3 T13: -0.1200 T23: 0.0352 REMARK 3 L TENSOR REMARK 3 L11: 8.6173 L22: 8.1629 REMARK 3 L33: 2.2837 L12: -1.1874 REMARK 3 L13: -0.3744 L23: 2.8348 REMARK 3 S TENSOR REMARK 3 S11: -0.0935 S12: -0.4690 S13: 0.2749 REMARK 3 S21: 0.2939 S22: -0.0335 S23: -0.1909 REMARK 3 S31: -0.3899 S32: 0.2904 S33: 0.1269 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6LWB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1300015519. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 130 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45145 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.99100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5ITY REMARK 200 REMARK 200 REMARK: THE ENTRY CONTAINS FRIEDEL PAIRS IN I/F_PLUS/MINUS REMARK 200 COLUMNS. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CACODYLIC ACID (PH 6.5), 0.1 M REMARK 280 NACL, 0.05 M MGCL2 AND 18% (W/V) PEG 8000, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.90350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 84.70100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.61800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 84.70100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.90350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.61800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 203 REMARK 465 HIS A 204 REMARK 465 ARG A 205 REMARK 465 PRO A 206 REMARK 465 SER A 207 REMARK 465 PRO A 208 REMARK 465 GLU A 209 REMARK 465 LEU A 210 REMARK 465 THR A 211 REMARK 465 LEU A 212 REMARK 465 SER A 213 REMARK 465 GLN A 214 REMARK 465 LYS A 215 REMARK 465 ILE A 216 REMARK 465 ARG A 217 REMARK 465 THR A 218 REMARK 465 LYS A 219 REMARK 465 LEU A 220 REMARK 465 GLN A 221 REMARK 465 ASN A 222 REMARK 465 GLY A 245 REMARK 465 SER A 246 REMARK 465 GLU A 247 REMARK 465 SER A 248 REMARK 465 LYS A 291 REMARK 465 GLY A 292 REMARK 465 ARG A 293 REMARK 465 LYS A 294 REMARK 465 SER A 295 REMARK 465 MET D 1 REMARK 465 GLN D 203 REMARK 465 HIS D 204 REMARK 465 ARG D 205 REMARK 465 PRO D 206 REMARK 465 SER D 207 REMARK 465 PRO D 208 REMARK 465 GLU D 209 REMARK 465 LEU D 210 REMARK 465 THR D 211 REMARK 465 LEU D 212 REMARK 465 SER D 213 REMARK 465 GLN D 214 REMARK 465 LYS D 215 REMARK 465 ILE D 216 REMARK 465 ARG D 217 REMARK 465 THR D 218 REMARK 465 LYS D 219 REMARK 465 LEU D 220 REMARK 465 GLN D 221 REMARK 465 ASN D 222 REMARK 465 ARG D 242 REMARK 465 GLY D 243 REMARK 465 TYR D 244 REMARK 465 GLY D 245 REMARK 465 SER D 246 REMARK 465 GLU D 247 REMARK 465 SER D 248 REMARK 465 GLY D 249 REMARK 465 LYS D 291 REMARK 465 GLY D 292 REMARK 465 ARG D 293 REMARK 465 LYS D 294 REMARK 465 SER D 295 REMARK 465 MET G 1 REMARK 465 ARG G 19 REMARK 465 ALA G 20 REMARK 465 LEU G 21 REMARK 465 VAL G 22 REMARK 465 PHE G 23 REMARK 465 GLY G 24 REMARK 465 GLY G 25 REMARK 465 CYS G 26 REMARK 465 PHE G 40 REMARK 465 GLU G 41 REMARK 465 SER G 42 REMARK 465 SER G 43 REMARK 465 ALA G 44 REMARK 465 TYR G 45 REMARK 465 ARG G 46 REMARK 465 SER G 61 REMARK 465 PRO G 62 REMARK 465 LEU G 63 REMARK 465 PRO G 64 REMARK 465 GLY G 65 REMARK 465 ALA G 66 REMARK 465 GLN G 67 REMARK 465 PRO G 68 REMARK 465 GLN G 69 REMARK 465 GLN G 70 REMARK 465 PRO G 108 REMARK 465 ARG G 109 REMARK 465 LEU G 110 REMARK 465 GLN G 202 REMARK 465 GLN G 203 REMARK 465 HIS G 204 REMARK 465 ARG G 205 REMARK 465 PRO G 206 REMARK 465 SER G 207 REMARK 465 PRO G 208 REMARK 465 GLU G 209 REMARK 465 LEU G 210 REMARK 465 THR G 211 REMARK 465 LEU G 212 REMARK 465 SER G 213 REMARK 465 GLN G 214 REMARK 465 LYS G 215 REMARK 465 ILE G 216 REMARK 465 ARG G 217 REMARK 465 THR G 218 REMARK 465 LYS G 219 REMARK 465 LEU G 220 REMARK 465 GLN G 221 REMARK 465 ASN G 222 REMARK 465 GLY G 240 REMARK 465 GLY G 241 REMARK 465 ARG G 242 REMARK 465 GLY G 243 REMARK 465 TYR G 244 REMARK 465 GLY G 245 REMARK 465 SER G 246 REMARK 465 GLU G 247 REMARK 465 SER G 248 REMARK 465 GLY G 249 REMARK 465 GLU G 250 REMARK 465 PRO G 290 REMARK 465 LYS G 291 REMARK 465 GLY G 292 REMARK 465 ARG G 293 REMARK 465 LYS G 294 REMARK 465 SER G 295 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU D 250 CB CG CD OE1 OE2 REMARK 470 GLU D 251 CB CG CD OE1 OE2 REMARK 470 ASP D 252 CB CG OD1 OD2 REMARK 470 PHE D 253 CG CD1 CD2 CE1 CE2 CZ REMARK 470 HIS G 8 CG ND1 CD2 CE1 NE2 REMARK 470 PHE G 13 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU G 16 CB CG CD OE1 OE2 REMARK 470 ALA G 17 CB REMARK 470 CYS G 18 CB SG REMARK 470 VAL G 27 CG1 CG2 REMARK 470 ARG G 34 CG CD NE CZ NH1 NH2 REMARK 470 VAL G 38 CG1 CG2 REMARK 470 ILE G 47 CG1 CG2 CD1 REMARK 470 SER G 48 CB OG REMARK 470 LEU G 56 CG CD1 CD2 REMARK 470 ARG G 57 CB CG CD NE CZ NH1 NH2 REMARK 470 LEU G 58 CB CG CD1 CD2 REMARK 470 ILE G 59 CG1 CG2 CD1 REMARK 470 LEU G 60 CB CG CD1 CD2 REMARK 470 GLU G 71 CB CG CD OE1 OE2 REMARK 470 LEU G 73 CB CG CD1 CD2 REMARK 470 LEU G 75 CB CG CD1 CD2 REMARK 470 VAL G 76 CG1 CG2 REMARK 470 GLN G 86 CG CD OE1 NE2 REMARK 470 LEU G 87 CG CD1 CD2 REMARK 470 VAL G 88 CG1 CG2 REMARK 470 PRO G 89 CB CG CD REMARK 470 ARG G 90 CB CG CD NE CZ NH1 NH2 REMARK 470 GLU G 91 CB CG CD OE1 OE2 REMARK 470 GLU G 92 CB CG CD OE1 OE2 REMARK 470 THR G 103 CB OG1 CG2 REMARK 470 ALA G 104 CB REMARK 470 PRO G 105 CB CG CD REMARK 470 PRO G 106 CB CG CD REMARK 470 ARG G 122 CG CD NE CZ NH1 NH2 REMARK 470 LEU G 125 CB CG CD1 CD2 REMARK 470 LYS G 128 CG CD CE NZ REMARK 470 TRP G 129 CB CG CD1 CD2 NE1 CE2 CE3 REMARK 470 TRP G 129 CZ2 CZ3 CH2 REMARK 470 ASN G 147 CG OD1 ND2 REMARK 470 VAL G 148 CB CG1 CG2 REMARK 470 LEU G 149 CB CG CD1 CD2 REMARK 470 ARG G 150 CB CG CD NE CZ NH1 NH2 REMARK 470 ASN G 151 CB CG OD1 ND2 REMARK 470 LEU G 152 CB CG CD1 CD2 REMARK 470 ALA G 153 CB REMARK 470 ASP G 154 CG OD1 OD2 REMARK 470 LYS G 155 CB CG CD CE NZ REMARK 470 ALA G 156 CB REMARK 470 PHE G 157 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG G 159 CB CG CD NE CZ NH1 NH2 REMARK 470 ALA G 164 CB REMARK 470 LEU G 165 CB CG CD1 CD2 REMARK 470 ILE G 174 CD1 REMARK 470 TYR G 184 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ALA G 194 CB REMARK 470 ARG G 195 CB CG CD NE CZ NH1 NH2 REMARK 470 VAL G 197 CB CG1 CG2 REMARK 470 LEU G 198 CG CD1 CD2 REMARK 470 GLU G 199 CB CG CD OE1 OE2 REMARK 470 LEU G 201 CG CD1 CD2 REMARK 470 GLU G 251 CB CG CD OE1 OE2 REMARK 470 ASP G 252 CG OD1 OD2 REMARK 470 PHE G 253 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 ALA G 254 CB REMARK 470 ALA G 255 CB REMARK 470 SER G 269 OG REMARK 470 SER G 270 CB OG REMARK 470 LEU G 271 CB CG CD1 CD2 REMARK 470 GLN G 272 CG CD OE1 NE2 REMARK 470 GLN G 282 CG CD OE1 NE2 REMARK 470 PRO G 285 CB CG CD REMARK 470 LEU G 288 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN A 143 O HOH A 301 1.70 REMARK 500 NH1 ARG G 78 OE1 GLN G 130 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 91 CG GLU A 91 CD 0.150 REMARK 500 GLU A 92 CD GLU A 92 OE1 0.122 REMARK 500 GLU A 92 CD GLU A 92 OE2 0.102 REMARK 500 GLU A 227 CD GLU A 227 OE1 0.068 REMARK 500 GLU D 91 CG GLU D 91 CD 0.109 REMARK 500 GLU D 92 CD GLU D 92 OE1 0.138 REMARK 500 GLU D 92 CD GLU D 92 OE2 0.086 REMARK 500 ARG D 150 NE ARG D 150 CZ 0.079 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG E 8 O5' - P - OP1 ANGL. DEV. = -18.5 DEGREES REMARK 500 DG E 8 O5' - P - OP2 ANGL. DEV. = 8.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 44 104.00 -160.41 REMARK 500 SER A 82 27.88 -145.89 REMARK 500 GLU A 92 55.41 -119.37 REMARK 500 ALA A 200 33.49 -85.82 REMARK 500 LEU A 201 -17.08 -140.83 REMARK 500 CYS A 262 -54.45 -133.67 REMARK 500 ALA D 44 104.68 -160.72 REMARK 500 ALA D 66 128.83 -32.19 REMARK 500 SER D 82 30.03 -150.27 REMARK 500 ASN D 172 106.86 -59.59 REMARK 500 CYS D 262 -55.65 -134.10 REMARK 500 SER G 82 28.00 -150.38 REMARK 500 ALA G 200 46.42 -78.21 REMARK 500 CYS G 262 -55.14 -135.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 105 PRO A 106 64.08 REMARK 500 GLY A 243 TYR A 244 -147.92 REMARK 500 PRO G 105 PRO G 106 35.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PRO A 105 10.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 432 DISTANCE = 6.80 ANGSTROMS DBREF 6LWB A 1 295 UNP Q96FI4 NEIL1_HUMAN 1 295 DBREF 6LWB B 1 13 PDB 6LWB 6LWB 1 13 DBREF 6LWB C 1 13 PDB 6LWB 6LWB 1 13 DBREF 6LWB D 1 295 UNP Q96FI4 NEIL1_HUMAN 1 295 DBREF 6LWB E 1 13 PDB 6LWB 6LWB 1 13 DBREF 6LWB F 1 13 PDB 6LWB 6LWB 1 13 DBREF 6LWB G 1 295 UNP Q96FI4 NEIL1_HUMAN 1 295 DBREF 6LWB H 1 13 PDB 6LWB 6LWB 1 13 DBREF 6LWB I 1 13 PDB 6LWB 6LWB 1 13 SEQADV 6LWB GLY A 2 UNP Q96FI4 PRO 2 ENGINEERED MUTATION SEQADV 6LWB GLN A 3 UNP Q96FI4 GLU 3 ENGINEERED MUTATION SEQADV 6LWB ARG A 242 UNP Q96FI4 LYS 242 VARIANT SEQADV 6LWB GLY D 2 UNP Q96FI4 PRO 2 ENGINEERED MUTATION SEQADV 6LWB GLN D 3 UNP Q96FI4 GLU 3 ENGINEERED MUTATION SEQADV 6LWB ARG D 242 UNP Q96FI4 LYS 242 VARIANT SEQADV 6LWB GLY G 2 UNP Q96FI4 PRO 2 ENGINEERED MUTATION SEQADV 6LWB GLN G 3 UNP Q96FI4 GLU 3 ENGINEERED MUTATION SEQADV 6LWB ARG G 242 UNP Q96FI4 LYS 242 VARIANT SEQRES 1 A 295 MET GLY GLN GLY PRO GLU LEU HIS LEU ALA SER GLN PHE SEQRES 2 A 295 VAL ASN GLU ALA CYS ARG ALA LEU VAL PHE GLY GLY CYS SEQRES 3 A 295 VAL GLU LYS SER SER VAL SER ARG ASN PRO GLU VAL PRO SEQRES 4 A 295 PHE GLU SER SER ALA TYR ARG ILE SER ALA SER ALA ARG SEQRES 5 A 295 GLY LYS GLU LEU ARG LEU ILE LEU SER PRO LEU PRO GLY SEQRES 6 A 295 ALA GLN PRO GLN GLN GLU PRO LEU ALA LEU VAL PHE ARG SEQRES 7 A 295 PHE GLY MET SER GLY SER PHE GLN LEU VAL PRO ARG GLU SEQRES 8 A 295 GLU LEU PRO ARG HIS ALA HIS LEU ARG PHE TYR THR ALA SEQRES 9 A 295 PRO PRO GLY PRO ARG LEU ALA LEU CYS PHE VAL ASP ILE SEQRES 10 A 295 ARG ARG PHE GLY ARG TRP ASP LEU GLY GLY LYS TRP GLN SEQRES 11 A 295 PRO GLY ARG GLY PRO CYS VAL LEU GLN GLU TYR GLN GLN SEQRES 12 A 295 PHE ARG GLU ASN VAL LEU ARG ASN LEU ALA ASP LYS ALA SEQRES 13 A 295 PHE ASP ARG PRO ILE CYS GLU ALA LEU LEU ASP GLN ARG SEQRES 14 A 295 PHE PHE ASN GLY ILE GLY ASN TYR LEU ARG ALA GLU ILE SEQRES 15 A 295 LEU TYR ARG LEU LYS ILE PRO PRO PHE GLU LYS ALA ARG SEQRES 16 A 295 SER VAL LEU GLU ALA LEU GLN GLN HIS ARG PRO SER PRO SEQRES 17 A 295 GLU LEU THR LEU SER GLN LYS ILE ARG THR LYS LEU GLN SEQRES 18 A 295 ASN PRO ASP LEU LEU GLU LEU CYS HIS SER VAL PRO LYS SEQRES 19 A 295 GLU VAL VAL GLN LEU GLY GLY ARG GLY TYR GLY SER GLU SEQRES 20 A 295 SER GLY GLU GLU ASP PHE ALA ALA PHE ARG ALA TRP LEU SEQRES 21 A 295 ARG CYS TYR GLY MET PRO GLY MET SER SER LEU GLN ASP SEQRES 22 A 295 ARG HIS GLY ARG THR ILE TRP PHE GLN GLY ASP PRO GLY SEQRES 23 A 295 PRO LEU ALA PRO LYS GLY ARG LYS SER SEQRES 1 B 13 DC DG DT DC DC DA OHU DG DT DC DT DA DC SEQRES 1 C 13 DT DA DG DA DC DC DT DG DG DA DC DG DG SEQRES 1 D 295 MET GLY GLN GLY PRO GLU LEU HIS LEU ALA SER GLN PHE SEQRES 2 D 295 VAL ASN GLU ALA CYS ARG ALA LEU VAL PHE GLY GLY CYS SEQRES 3 D 295 VAL GLU LYS SER SER VAL SER ARG ASN PRO GLU VAL PRO SEQRES 4 D 295 PHE GLU SER SER ALA TYR ARG ILE SER ALA SER ALA ARG SEQRES 5 D 295 GLY LYS GLU LEU ARG LEU ILE LEU SER PRO LEU PRO GLY SEQRES 6 D 295 ALA GLN PRO GLN GLN GLU PRO LEU ALA LEU VAL PHE ARG SEQRES 7 D 295 PHE GLY MET SER GLY SER PHE GLN LEU VAL PRO ARG GLU SEQRES 8 D 295 GLU LEU PRO ARG HIS ALA HIS LEU ARG PHE TYR THR ALA SEQRES 9 D 295 PRO PRO GLY PRO ARG LEU ALA LEU CYS PHE VAL ASP ILE SEQRES 10 D 295 ARG ARG PHE GLY ARG TRP ASP LEU GLY GLY LYS TRP GLN SEQRES 11 D 295 PRO GLY ARG GLY PRO CYS VAL LEU GLN GLU TYR GLN GLN SEQRES 12 D 295 PHE ARG GLU ASN VAL LEU ARG ASN LEU ALA ASP LYS ALA SEQRES 13 D 295 PHE ASP ARG PRO ILE CYS GLU ALA LEU LEU ASP GLN ARG SEQRES 14 D 295 PHE PHE ASN GLY ILE GLY ASN TYR LEU ARG ALA GLU ILE SEQRES 15 D 295 LEU TYR ARG LEU LYS ILE PRO PRO PHE GLU LYS ALA ARG SEQRES 16 D 295 SER VAL LEU GLU ALA LEU GLN GLN HIS ARG PRO SER PRO SEQRES 17 D 295 GLU LEU THR LEU SER GLN LYS ILE ARG THR LYS LEU GLN SEQRES 18 D 295 ASN PRO ASP LEU LEU GLU LEU CYS HIS SER VAL PRO LYS SEQRES 19 D 295 GLU VAL VAL GLN LEU GLY GLY ARG GLY TYR GLY SER GLU SEQRES 20 D 295 SER GLY GLU GLU ASP PHE ALA ALA PHE ARG ALA TRP LEU SEQRES 21 D 295 ARG CYS TYR GLY MET PRO GLY MET SER SER LEU GLN ASP SEQRES 22 D 295 ARG HIS GLY ARG THR ILE TRP PHE GLN GLY ASP PRO GLY SEQRES 23 D 295 PRO LEU ALA PRO LYS GLY ARG LYS SER SEQRES 1 E 13 DC DG DT DC DC DA OHU DG DT DC DT DA DC SEQRES 1 F 13 DT DA DG DA DC DC DT DG DG DA DC DG DG SEQRES 1 G 295 MET GLY GLN GLY PRO GLU LEU HIS LEU ALA SER GLN PHE SEQRES 2 G 295 VAL ASN GLU ALA CYS ARG ALA LEU VAL PHE GLY GLY CYS SEQRES 3 G 295 VAL GLU LYS SER SER VAL SER ARG ASN PRO GLU VAL PRO SEQRES 4 G 295 PHE GLU SER SER ALA TYR ARG ILE SER ALA SER ALA ARG SEQRES 5 G 295 GLY LYS GLU LEU ARG LEU ILE LEU SER PRO LEU PRO GLY SEQRES 6 G 295 ALA GLN PRO GLN GLN GLU PRO LEU ALA LEU VAL PHE ARG SEQRES 7 G 295 PHE GLY MET SER GLY SER PHE GLN LEU VAL PRO ARG GLU SEQRES 8 G 295 GLU LEU PRO ARG HIS ALA HIS LEU ARG PHE TYR THR ALA SEQRES 9 G 295 PRO PRO GLY PRO ARG LEU ALA LEU CYS PHE VAL ASP ILE SEQRES 10 G 295 ARG ARG PHE GLY ARG TRP ASP LEU GLY GLY LYS TRP GLN SEQRES 11 G 295 PRO GLY ARG GLY PRO CYS VAL LEU GLN GLU TYR GLN GLN SEQRES 12 G 295 PHE ARG GLU ASN VAL LEU ARG ASN LEU ALA ASP LYS ALA SEQRES 13 G 295 PHE ASP ARG PRO ILE CYS GLU ALA LEU LEU ASP GLN ARG SEQRES 14 G 295 PHE PHE ASN GLY ILE GLY ASN TYR LEU ARG ALA GLU ILE SEQRES 15 G 295 LEU TYR ARG LEU LYS ILE PRO PRO PHE GLU LYS ALA ARG SEQRES 16 G 295 SER VAL LEU GLU ALA LEU GLN GLN HIS ARG PRO SER PRO SEQRES 17 G 295 GLU LEU THR LEU SER GLN LYS ILE ARG THR LYS LEU GLN SEQRES 18 G 295 ASN PRO ASP LEU LEU GLU LEU CYS HIS SER VAL PRO LYS SEQRES 19 G 295 GLU VAL VAL GLN LEU GLY GLY ARG GLY TYR GLY SER GLU SEQRES 20 G 295 SER GLY GLU GLU ASP PHE ALA ALA PHE ARG ALA TRP LEU SEQRES 21 G 295 ARG CYS TYR GLY MET PRO GLY MET SER SER LEU GLN ASP SEQRES 22 G 295 ARG HIS GLY ARG THR ILE TRP PHE GLN GLY ASP PRO GLY SEQRES 23 G 295 PRO LEU ALA PRO LYS GLY ARG LYS SER SEQRES 1 H 13 DC DG DT DC DC DA OHU DG DT DC DT DA DC SEQRES 1 I 13 DT DA DG DA DC DC DT DG DG DA DC DG DG HET OHU B 7 20 HET OHU E 7 20 HET OHU H 7 20 HETNAM OHU 2'-DEOXY-5-HYDROXYURIDINE 5'-(DIHYDROGEN PHOSPHATE) FORMUL 2 OHU 3(C9 H13 N2 O9 P) FORMUL 10 HOH *260(H2 O) HELIX 1 AA1 GLN A 3 CYS A 18 1 16 HELIX 2 AA2 GLU A 140 ARG A 150 1 11 HELIX 3 AA3 ASP A 154 ARG A 159 5 6 HELIX 4 AA4 PRO A 160 LEU A 165 1 6 HELIX 5 AA5 GLY A 175 LYS A 187 1 13 HELIX 6 AA6 LYS A 193 ALA A 200 1 8 HELIX 7 AA7 ASP A 224 GLY A 240 1 17 HELIX 8 AA8 GLU A 250 LEU A 260 1 11 HELIX 9 AA9 GLN D 3 ARG D 19 1 17 HELIX 10 AB1 GLU D 140 ARG D 150 1 11 HELIX 11 AB2 ASP D 154 ARG D 159 5 6 HELIX 12 AB3 PRO D 160 LEU D 165 1 6 HELIX 13 AB4 GLY D 175 LYS D 187 1 13 HELIX 14 AB5 LYS D 193 ALA D 200 1 8 HELIX 15 AB6 ASP D 224 GLY D 240 1 17 HELIX 16 AB7 GLU D 251 LEU D 260 1 10 HELIX 17 AB8 GLN G 3 GLU G 16 1 14 HELIX 18 AB9 GLU G 140 ARG G 150 1 11 HELIX 19 AC1 ASP G 154 ARG G 159 5 6 HELIX 20 AC2 PRO G 160 LEU G 165 1 6 HELIX 21 AC3 GLY G 175 LEU G 186 1 12 HELIX 22 AC4 LYS G 193 ALA G 200 1 8 HELIX 23 AC5 ASP G 224 LEU G 239 1 16 HELIX 24 AC6 ASP G 252 LEU G 260 1 9 SHEET 1 AA1 8 GLY A 83 PRO A 89 0 SHEET 2 AA1 8 LEU A 110 ASP A 116 -1 O CYS A 113 N GLN A 86 SHEET 3 AA1 8 ALA A 97 THR A 103 -1 N PHE A 101 O LEU A 112 SHEET 4 AA1 8 PHE A 23 LYS A 29 -1 N GLU A 28 O ARG A 100 SHEET 5 AA1 8 GLU A 41 ARG A 52 -1 O TYR A 45 N PHE A 23 SHEET 6 AA1 8 GLU A 55 PRO A 62 -1 O ARG A 57 N SER A 50 SHEET 7 AA1 8 LEU A 73 ARG A 78 -1 O LEU A 73 N LEU A 60 SHEET 8 AA1 8 ARG A 122 ASP A 124 -1 O ARG A 122 N ARG A 78 SHEET 1 AA2 2 SER A 269 GLN A 272 0 SHEET 2 AA2 2 THR A 278 PHE A 281 -1 O ILE A 279 N LEU A 271 SHEET 1 AA3 5 PHE D 23 CYS D 26 0 SHEET 2 AA3 5 GLU D 41 ARG D 52 -1 O TYR D 45 N PHE D 23 SHEET 3 AA3 5 GLU D 55 PRO D 62 -1 O ARG D 57 N SER D 50 SHEET 4 AA3 5 LEU D 73 ARG D 78 -1 O LEU D 73 N LEU D 60 SHEET 5 AA3 5 ARG D 122 LEU D 125 -1 O ARG D 122 N ARG D 78 SHEET 1 AA4 4 GLU D 28 LYS D 29 0 SHEET 2 AA4 4 ALA D 97 TYR D 102 -1 O ARG D 100 N GLU D 28 SHEET 3 AA4 4 LEU D 110 ASP D 116 -1 O LEU D 112 N PHE D 101 SHEET 4 AA4 4 GLY D 83 PRO D 89 -1 N VAL D 88 O ALA D 111 SHEET 1 AA5 2 SER D 269 GLN D 272 0 SHEET 2 AA5 2 THR D 278 PHE D 281 -1 O ILE D 279 N LEU D 271 SHEET 1 AA6 4 GLU G 28 LYS G 29 0 SHEET 2 AA6 4 ALA G 97 PHE G 101 -1 O ARG G 100 N GLU G 28 SHEET 3 AA6 4 LEU G 112 ASP G 116 -1 O PHE G 114 N LEU G 99 SHEET 4 AA6 4 GLY G 83 LEU G 87 -1 N GLN G 86 O CYS G 113 SHEET 1 AA7 4 SER G 48 ARG G 52 0 SHEET 2 AA7 4 GLU G 55 ILE G 59 -1 O ARG G 57 N SER G 50 SHEET 3 AA7 4 ALA G 74 ARG G 78 -1 O PHE G 77 N LEU G 56 SHEET 4 AA7 4 ARG G 122 LEU G 125 -1 O ARG G 122 N ARG G 78 SHEET 1 AA8 2 SER G 269 GLN G 272 0 SHEET 2 AA8 2 THR G 278 PHE G 281 -1 O ILE G 279 N LEU G 271 LINK O3' DA B 6 P OHU B 7 1555 1555 1.62 LINK O3' OHU B 7 P DG B 8 1555 1555 1.58 LINK O3' DA E 6 P OHU E 7 1555 1555 1.60 LINK O3' OHU E 7 P DG E 8 1555 1555 1.58 LINK O3' DA H 6 P OHU H 7 1555 1555 1.60 LINK O3' OHU H 7 P DG H 8 1555 1555 1.57 CISPEP 1 GLN A 67 PRO A 68 0 -7.13 CISPEP 2 GLN D 67 PRO D 68 0 -12.07 CISPEP 3 PRO D 105 PRO D 106 0 16.07 CRYST1 73.807 109.236 169.402 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013549 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009154 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005903 0.00000