HEADER DNA BINDING PROTEIN/DNA 07-FEB-20 6LWP TITLE CRYSTAL STRUCTURE OF HUMAN NEIL1(R242, Y244R) BOUND TO DUPLEX DNA TITLE 2 CONTAINING 2'-FLUORO-2'-DEOXY-5,6-DIHYDROURIDINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDONUCLEASE 8-LIKE 1; COMPND 3 CHAIN: A, D, G; COMPND 4 SYNONYM: DNA GLYCOSYLASE/AP LYASE NEIL1,DNA-(APURINIC OR APYRIMIDINIC COMPND 5 SITE) LYASE NEIL1,ENDONUCLEASE VIII-LIKE 1,FPG1,NEI HOMOLOG 1,NEH1, COMPND 6 NEI-LIKE PROTEIN 1; COMPND 7 EC: 3.2.2.-,4.2.99.18; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: DNA (5'-D(*CP*GP*TP*CP*CP*AP*(FDU)P*GP*TP*CP*TP*AP*C)-3'); COMPND 12 CHAIN: B, E, H; COMPND 13 ENGINEERED: YES; COMPND 14 OTHER_DETAILS: OLIGO DNA CONTAINING 2'-FLUORO-2'-DEOXY-5,6- COMPND 15 DIHYDROURIDINE; COMPND 16 MOL_ID: 3; COMPND 17 MOLECULE: DNA (5'-D(*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*G)-3'); COMPND 18 CHAIN: C, F, I; COMPND 19 ENGINEERED: YES; COMPND 20 OTHER_DETAILS: COMPLEMENTARY STRAND SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NEIL1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 11 ORGANISM_TAXID: 562; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 15 ORGANISM_TAXID: 562 KEYWDS BASE LESION, OXIDATIVE DNA DAMAGE, DNA REPAIR, DNA BINDING PROTEIN- KEYWDS 2 DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.H.LIU,J.ZHANG,C.X.ZHU,X.X.ZHANG,Y.Q.GAO,C.Q.YI REVDAT 3 29-NOV-23 6LWP 1 REMARK REVDAT 2 14-JUL-21 6LWP 1 JRNL REVDAT 1 09-JUN-21 6LWP 0 JRNL AUTH M.LIU,J.ZHANG,C.ZHU,X.ZHANG,W.XIAO,Y.YAN,L.LIU,H.ZENG, JRNL AUTH 2 Y.Q.GAO,C.YI JRNL TITL DNA REPAIR GLYCOSYLASE HNEIL1 TRIAGES DAMAGED BASES VIA JRNL TITL 2 COMPETING INTERACTION MODES. JRNL REF NAT COMMUN V. 12 4108 2021 JRNL REFN ESSN 2041-1723 JRNL PMID 34226550 JRNL DOI 10.1038/S41467-021-24431-Y REMARK 2 REMARK 2 RESOLUTION. 2.64 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.64 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.17 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 39478 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2130 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.64 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.71 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2805 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.06 REMARK 3 BIN R VALUE (WORKING SET) : 0.2890 REMARK 3 BIN FREE R VALUE SET COUNT : 134 REMARK 3 BIN FREE R VALUE : 0.2700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5876 REMARK 3 NUCLEIC ACID ATOMS : 1575 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 216 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 81.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.55000 REMARK 3 B22 (A**2) : 0.34000 REMARK 3 B33 (A**2) : 1.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.512 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.275 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.227 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.665 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7795 ; 0.009 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 6498 ; 0.003 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10849 ; 1.610 ; 1.545 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14963 ; 1.333 ; 1.776 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 747 ;10.903 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 361 ;33.928 ;19.889 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 933 ;17.791 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 69 ;21.952 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 932 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7885 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1936 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 290 REMARK 3 ORIGIN FOR THE GROUP (A): -8.650 -8.953 36.155 REMARK 3 T TENSOR REMARK 3 T11: 0.0226 T22: 0.0241 REMARK 3 T33: 0.2985 T12: -0.0076 REMARK 3 T13: 0.0176 T23: 0.0268 REMARK 3 L TENSOR REMARK 3 L11: 2.9319 L22: 6.3709 REMARK 3 L33: 1.6059 L12: 2.3405 REMARK 3 L13: 0.3971 L23: 1.8354 REMARK 3 S TENSOR REMARK 3 S11: -0.1957 S12: 0.1807 S13: 0.0158 REMARK 3 S21: -0.2272 S22: 0.2865 S23: -0.3670 REMARK 3 S31: 0.0411 S32: 0.1344 S33: -0.0908 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 13 REMARK 3 ORIGIN FOR THE GROUP (A): -1.240 -15.973 20.085 REMARK 3 T TENSOR REMARK 3 T11: 0.4419 T22: 0.4091 REMARK 3 T33: 0.6277 T12: -0.0455 REMARK 3 T13: 0.0789 T23: -0.0884 REMARK 3 L TENSOR REMARK 3 L11: 9.3357 L22: 3.9341 REMARK 3 L33: 4.7950 L12: -3.0216 REMARK 3 L13: -3.2851 L23: 0.6494 REMARK 3 S TENSOR REMARK 3 S11: 0.3118 S12: 1.1626 S13: -0.2652 REMARK 3 S21: -0.7669 S22: -0.2340 S23: 0.1790 REMARK 3 S31: -0.2175 S32: 0.3035 S33: -0.0778 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 13 REMARK 3 ORIGIN FOR THE GROUP (A): 3.961 -18.466 20.547 REMARK 3 T TENSOR REMARK 3 T11: 0.4105 T22: 0.4777 REMARK 3 T33: 0.5706 T12: -0.0663 REMARK 3 T13: 0.2300 T23: 0.0135 REMARK 3 L TENSOR REMARK 3 L11: 5.8366 L22: 9.5403 REMARK 3 L33: 5.3038 L12: -1.6533 REMARK 3 L13: -0.3395 L23: 3.3751 REMARK 3 S TENSOR REMARK 3 S11: -0.0441 S12: -0.1473 S13: -0.1122 REMARK 3 S21: -0.5868 S22: 0.3504 S23: -0.0740 REMARK 3 S31: 0.3665 S32: -0.3708 S33: -0.3062 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 2 D 290 REMARK 3 ORIGIN FOR THE GROUP (A): -29.279 8.155 51.888 REMARK 3 T TENSOR REMARK 3 T11: 0.0741 T22: 0.0387 REMARK 3 T33: 0.2526 T12: 0.0403 REMARK 3 T13: 0.0220 T23: -0.0284 REMARK 3 L TENSOR REMARK 3 L11: 6.1063 L22: 4.6410 REMARK 3 L33: 3.4208 L12: -2.3970 REMARK 3 L13: -0.2244 L23: 0.1923 REMARK 3 S TENSOR REMARK 3 S11: -0.2590 S12: -0.2991 S13: -0.4047 REMARK 3 S21: 0.3060 S22: 0.1667 S23: 0.1974 REMARK 3 S31: 0.1691 S32: 0.0382 S33: 0.0923 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 1 E 13 REMARK 3 ORIGIN FOR THE GROUP (A): -35.848 17.565 66.548 REMARK 3 T TENSOR REMARK 3 T11: 0.4095 T22: 0.5158 REMARK 3 T33: 0.3859 T12: 0.1147 REMARK 3 T13: -0.0512 T23: 0.0279 REMARK 3 L TENSOR REMARK 3 L11: 8.5879 L22: 3.8412 REMARK 3 L33: 4.2596 L12: 0.9490 REMARK 3 L13: -3.2745 L23: 0.8923 REMARK 3 S TENSOR REMARK 3 S11: -0.1856 S12: -0.6847 S13: 0.2548 REMARK 3 S21: 0.5277 S22: 0.0894 S23: 0.3325 REMARK 3 S31: -0.1735 S32: 0.0628 S33: 0.0962 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 1 F 13 REMARK 3 ORIGIN FOR THE GROUP (A): -40.783 15.789 68.868 REMARK 3 T TENSOR REMARK 3 T11: 0.4074 T22: 0.4126 REMARK 3 T33: 0.5549 T12: 0.2385 REMARK 3 T13: 0.1711 T23: 0.0337 REMARK 3 L TENSOR REMARK 3 L11: 4.4059 L22: 2.9247 REMARK 3 L33: 13.6870 L12: 0.8459 REMARK 3 L13: 1.5338 L23: -0.8564 REMARK 3 S TENSOR REMARK 3 S11: -0.4288 S12: -0.8123 S13: -0.3386 REMARK 3 S21: 0.7514 S22: 0.3371 S23: -0.3682 REMARK 3 S31: -0.1465 S32: -0.3481 S33: 0.0917 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : G 2 G 289 REMARK 3 ORIGIN FOR THE GROUP (A): -43.403 9.177 3.734 REMARK 3 T TENSOR REMARK 3 T11: 0.9309 T22: 0.7285 REMARK 3 T33: 0.4462 T12: 0.2396 REMARK 3 T13: -0.1211 T23: -0.1838 REMARK 3 L TENSOR REMARK 3 L11: 5.2355 L22: 2.2007 REMARK 3 L33: 4.7168 L12: 0.3626 REMARK 3 L13: -2.1702 L23: -0.2664 REMARK 3 S TENSOR REMARK 3 S11: 0.3081 S12: -0.0102 S13: -0.1309 REMARK 3 S21: -0.3025 S22: -0.2057 S23: 0.0073 REMARK 3 S31: 0.0947 S32: 0.1009 S33: -0.1023 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1 H 13 REMARK 3 ORIGIN FOR THE GROUP (A): -37.139 -6.540 -0.827 REMARK 3 T TENSOR REMARK 3 T11: 0.8490 T22: 0.9382 REMARK 3 T33: 0.7181 T12: -0.0123 REMARK 3 T13: 0.0405 T23: 0.1100 REMARK 3 L TENSOR REMARK 3 L11: 8.8608 L22: 1.8497 REMARK 3 L33: 4.2267 L12: -0.9983 REMARK 3 L13: 4.6836 L23: 0.7828 REMARK 3 S TENSOR REMARK 3 S11: -0.1575 S12: -0.0692 S13: -0.6906 REMARK 3 S21: -0.1890 S22: 0.1791 S23: -0.0075 REMARK 3 S31: -0.0813 S32: -0.0430 S33: -0.0216 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : I 1 I 13 REMARK 3 ORIGIN FOR THE GROUP (A): -32.452 -7.838 1.361 REMARK 3 T TENSOR REMARK 3 T11: 0.8315 T22: 1.0262 REMARK 3 T33: 0.6570 T12: 0.1656 REMARK 3 T13: 0.0616 T23: -0.1060 REMARK 3 L TENSOR REMARK 3 L11: 5.9845 L22: 7.7947 REMARK 3 L33: 3.6640 L12: 0.1313 REMARK 3 L13: -0.0261 L23: -3.5305 REMARK 3 S TENSOR REMARK 3 S11: -0.3706 S12: -0.1681 S13: -0.5049 REMARK 3 S21: 0.4209 S22: 0.1597 S23: 0.3202 REMARK 3 S31: 0.1792 S32: 0.1530 S33: 0.2110 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6LWP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1300015604. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 130 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41670 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.640 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.64 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.99200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5ITY REMARK 200 REMARK 200 REMARK: THE ENTRY CONTAINS FRIEDEL PAIRS IN I/F_PLUS/MINUS REMARK 200 COLUMNS. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CACODYLIC ACID (PH 6.5), 0.1 M REMARK 280 NACL, 0.05 M MGCL2 AND 18% (W/V) PEG 8000, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.96900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.97200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.81750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 85.97200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.96900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.81750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 203 REMARK 465 HIS A 204 REMARK 465 ARG A 205 REMARK 465 PRO A 206 REMARK 465 SER A 207 REMARK 465 PRO A 208 REMARK 465 GLU A 209 REMARK 465 LEU A 210 REMARK 465 THR A 211 REMARK 465 LEU A 212 REMARK 465 SER A 213 REMARK 465 GLN A 214 REMARK 465 LYS A 215 REMARK 465 ILE A 216 REMARK 465 ARG A 217 REMARK 465 THR A 218 REMARK 465 LYS A 219 REMARK 465 LEU A 220 REMARK 465 GLN A 221 REMARK 465 GLY A 245 REMARK 465 SER A 246 REMARK 465 GLU A 247 REMARK 465 SER A 248 REMARK 465 LYS A 291 REMARK 465 GLY A 292 REMARK 465 ARG A 293 REMARK 465 LYS A 294 REMARK 465 SER A 295 REMARK 465 MET D 1 REMARK 465 GLN D 203 REMARK 465 HIS D 204 REMARK 465 ARG D 205 REMARK 465 PRO D 206 REMARK 465 SER D 207 REMARK 465 PRO D 208 REMARK 465 GLU D 209 REMARK 465 LEU D 210 REMARK 465 THR D 211 REMARK 465 LEU D 212 REMARK 465 SER D 213 REMARK 465 GLN D 214 REMARK 465 LYS D 215 REMARK 465 ILE D 216 REMARK 465 ARG D 217 REMARK 465 THR D 218 REMARK 465 LYS D 219 REMARK 465 LEU D 220 REMARK 465 GLN D 221 REMARK 465 ARG D 242 REMARK 465 GLY D 243 REMARK 465 ARG D 244 REMARK 465 GLY D 245 REMARK 465 SER D 246 REMARK 465 GLU D 247 REMARK 465 SER D 248 REMARK 465 GLY D 249 REMARK 465 GLU D 250 REMARK 465 GLU D 251 REMARK 465 LYS D 291 REMARK 465 GLY D 292 REMARK 465 ARG D 293 REMARK 465 LYS D 294 REMARK 465 SER D 295 REMARK 465 MET G 1 REMARK 465 ALA G 20 REMARK 465 LEU G 21 REMARK 465 VAL G 22 REMARK 465 PHE G 23 REMARK 465 GLY G 24 REMARK 465 GLY G 25 REMARK 465 SER G 43 REMARK 465 ALA G 44 REMARK 465 TYR G 45 REMARK 465 ARG G 46 REMARK 465 LEU G 63 REMARK 465 PRO G 64 REMARK 465 GLY G 65 REMARK 465 ALA G 66 REMARK 465 GLN G 67 REMARK 465 PRO G 68 REMARK 465 GLN G 69 REMARK 465 PRO G 106 REMARK 465 GLY G 107 REMARK 465 PRO G 108 REMARK 465 ARG G 109 REMARK 465 GLN G 202 REMARK 465 GLN G 203 REMARK 465 HIS G 204 REMARK 465 ARG G 205 REMARK 465 PRO G 206 REMARK 465 SER G 207 REMARK 465 PRO G 208 REMARK 465 GLU G 209 REMARK 465 LEU G 210 REMARK 465 THR G 211 REMARK 465 LEU G 212 REMARK 465 SER G 213 REMARK 465 GLN G 214 REMARK 465 LYS G 215 REMARK 465 ILE G 216 REMARK 465 ARG G 217 REMARK 465 THR G 218 REMARK 465 LYS G 219 REMARK 465 LEU G 220 REMARK 465 GLN G 221 REMARK 465 ASN G 222 REMARK 465 GLY G 240 REMARK 465 GLY G 241 REMARK 465 ARG G 242 REMARK 465 GLY G 243 REMARK 465 ARG G 244 REMARK 465 GLY G 245 REMARK 465 SER G 246 REMARK 465 GLU G 247 REMARK 465 SER G 248 REMARK 465 GLY G 249 REMARK 465 GLU G 250 REMARK 465 GLU G 251 REMARK 465 PRO G 290 REMARK 465 LYS G 291 REMARK 465 GLY G 292 REMARK 465 ARG G 293 REMARK 465 LYS G 294 REMARK 465 SER G 295 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU D 198 CB CG CD1 CD2 REMARK 470 ASP D 252 CG OD1 OD2 REMARK 470 PHE D 253 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ALA D 254 CB REMARK 470 ALA D 255 CB REMARK 470 MET D 268 CG SD CE REMARK 470 GLN G 12 CG CD OE1 NE2 REMARK 470 CYS G 18 CB SG REMARK 470 ARG G 19 CB CG CD NE CZ NH1 NH2 REMARK 470 CYS G 26 CB SG REMARK 470 VAL G 27 CB CG1 CG2 REMARK 470 ARG G 34 CG CD NE CZ NH1 NH2 REMARK 470 VAL G 38 CB CG1 CG2 REMARK 470 PHE G 40 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU G 41 CB CG CD OE1 OE2 REMARK 470 SER G 42 OG REMARK 470 ILE G 47 CG1 CG2 CD1 REMARK 470 SER G 48 CB OG REMARK 470 ALA G 49 CB REMARK 470 GLU G 55 CG CD OE1 OE2 REMARK 470 LEU G 58 CG CD1 CD2 REMARK 470 ILE G 59 CG1 CG2 CD1 REMARK 470 LEU G 60 CB CG CD1 CD2 REMARK 470 LEU G 73 CB CG CD1 CD2 REMARK 470 ALA G 74 CB REMARK 470 LEU G 75 CG CD1 CD2 REMARK 470 LEU G 87 CG CD1 CD2 REMARK 470 VAL G 88 CG1 CG2 REMARK 470 ARG G 90 CG CD NE CZ NH1 NH2 REMARK 470 GLU G 91 CB CG CD OE1 OE2 REMARK 470 GLU G 92 CB CG CD OE1 OE2 REMARK 470 THR G 103 OG1 CG2 REMARK 470 ALA G 104 CB REMARK 470 LEU G 110 CB CG CD1 CD2 REMARK 470 ALA G 111 CB REMARK 470 ARG G 122 CG CD NE CZ NH1 NH2 REMARK 470 LEU G 125 CB CG CD1 CD2 REMARK 470 LEU G 149 CB CG CD1 CD2 REMARK 470 LEU G 152 CB CG CD1 CD2 REMARK 470 PHE G 157 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG G 159 CB CG CD NE CZ NH1 NH2 REMARK 470 ILE G 174 CD1 REMARK 470 TYR G 184 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS G 193 CB CG CD CE NZ REMARK 470 ARG G 195 CB CG CD NE CZ NH1 NH2 REMARK 470 LEU G 198 CG CD1 CD2 REMARK 470 PHE G 253 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ALA G 254 CB REMARK 470 ALA G 258 CB REMARK 470 SER G 269 OG REMARK 470 SER G 270 OG REMARK 470 GLN G 272 CG CD OE1 NE2 REMARK 470 GLN G 282 CG CD OE1 NE2 REMARK 470 PRO G 285 CB CG CD REMARK 470 PRO G 287 CB CG CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 143 O HOH A 401 1.94 REMARK 500 N PRO G 2 F2 EW3 H 7 1.98 REMARK 500 NE2 GLN D 67 OE1 GLN G 238 2.04 REMARK 500 N PRO A 2 F2 EW3 B 7 2.15 REMARK 500 OE1 GLU G 28 OH TYR G 102 2.16 REMARK 500 OP1 DC F 5 O HOH F 101 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 92 CD GLU A 92 OE1 -0.088 REMARK 500 GLU D 92 CD GLU D 92 OE2 0.091 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 133 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 133 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 DG B 2 O5' - C5' - C4' ANGL. DEV. = -5.0 DEGREES REMARK 500 DT C 7 O5' - P - OP2 ANGL. DEV. = -5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 54 30.49 -98.63 REMARK 500 SER A 82 13.12 -141.75 REMARK 500 ASP A 116 86.74 -151.48 REMARK 500 ASN A 172 107.42 -58.96 REMARK 500 ALA A 200 6.79 -64.93 REMARK 500 LEU A 201 29.07 -147.89 REMARK 500 ARG A 242 42.63 -145.40 REMARK 500 CYS A 262 -58.26 -134.00 REMARK 500 ALA D 44 110.37 -168.71 REMARK 500 PRO D 72 150.77 -43.32 REMARK 500 SER D 82 15.54 -147.14 REMARK 500 SER D 84 164.54 178.54 REMARK 500 PRO D 105 171.47 -46.23 REMARK 500 PRO D 106 -177.49 -58.41 REMARK 500 ASP D 116 84.92 -153.13 REMARK 500 ASN D 172 108.18 -57.21 REMARK 500 CYS D 262 -60.11 -131.45 REMARK 500 LEU D 288 34.28 -94.82 REMARK 500 SER G 82 14.30 -148.49 REMARK 500 ASN G 172 109.26 -58.87 REMARK 500 CYS G 262 -59.71 -131.94 REMARK 500 LEU G 288 33.77 -95.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 105 PRO A 106 49.52 REMARK 500 PRO D 105 PRO D 106 -98.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PRO A 105 10.64 REMARK 500 PRO D 105 -10.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 511 DISTANCE = 5.96 ANGSTROMS DBREF 6LWP A 1 295 UNP Q96FI4 NEIL1_HUMAN 1 295 DBREF 6LWP B 1 13 PDB 6LWP 6LWP 1 13 DBREF 6LWP C 1 13 PDB 6LWP 6LWP 1 13 DBREF 6LWP D 1 295 UNP Q96FI4 NEIL1_HUMAN 1 295 DBREF 6LWP E 1 13 PDB 6LWP 6LWP 1 13 DBREF 6LWP F 1 13 PDB 6LWP 6LWP 1 13 DBREF 6LWP G 1 295 UNP Q96FI4 NEIL1_HUMAN 1 295 DBREF 6LWP H 1 13 PDB 6LWP 6LWP 1 13 DBREF 6LWP I 1 13 PDB 6LWP 6LWP 1 13 SEQADV 6LWP ARG A 242 UNP Q96FI4 LYS 242 VARIANT SEQADV 6LWP ARG A 244 UNP Q96FI4 TYR 244 ENGINEERED MUTATION SEQADV 6LWP ARG D 242 UNP Q96FI4 LYS 242 VARIANT SEQADV 6LWP ARG D 244 UNP Q96FI4 TYR 244 ENGINEERED MUTATION SEQADV 6LWP ARG G 242 UNP Q96FI4 LYS 242 VARIANT SEQADV 6LWP ARG G 244 UNP Q96FI4 TYR 244 ENGINEERED MUTATION SEQRES 1 A 295 MET PRO GLU GLY PRO GLU LEU HIS LEU ALA SER GLN PHE SEQRES 2 A 295 VAL ASN GLU ALA CYS ARG ALA LEU VAL PHE GLY GLY CYS SEQRES 3 A 295 VAL GLU LYS SER SER VAL SER ARG ASN PRO GLU VAL PRO SEQRES 4 A 295 PHE GLU SER SER ALA TYR ARG ILE SER ALA SER ALA ARG SEQRES 5 A 295 GLY LYS GLU LEU ARG LEU ILE LEU SER PRO LEU PRO GLY SEQRES 6 A 295 ALA GLN PRO GLN GLN GLU PRO LEU ALA LEU VAL PHE ARG SEQRES 7 A 295 PHE GLY MET SER GLY SER PHE GLN LEU VAL PRO ARG GLU SEQRES 8 A 295 GLU LEU PRO ARG HIS ALA HIS LEU ARG PHE TYR THR ALA SEQRES 9 A 295 PRO PRO GLY PRO ARG LEU ALA LEU CYS PHE VAL ASP ILE SEQRES 10 A 295 ARG ARG PHE GLY ARG TRP ASP LEU GLY GLY LYS TRP GLN SEQRES 11 A 295 PRO GLY ARG GLY PRO CYS VAL LEU GLN GLU TYR GLN GLN SEQRES 12 A 295 PHE ARG GLU ASN VAL LEU ARG ASN LEU ALA ASP LYS ALA SEQRES 13 A 295 PHE ASP ARG PRO ILE CYS GLU ALA LEU LEU ASP GLN ARG SEQRES 14 A 295 PHE PHE ASN GLY ILE GLY ASN TYR LEU ARG ALA GLU ILE SEQRES 15 A 295 LEU TYR ARG LEU LYS ILE PRO PRO PHE GLU LYS ALA ARG SEQRES 16 A 295 SER VAL LEU GLU ALA LEU GLN GLN HIS ARG PRO SER PRO SEQRES 17 A 295 GLU LEU THR LEU SER GLN LYS ILE ARG THR LYS LEU GLN SEQRES 18 A 295 ASN PRO ASP LEU LEU GLU LEU CYS HIS SER VAL PRO LYS SEQRES 19 A 295 GLU VAL VAL GLN LEU GLY GLY ARG GLY ARG GLY SER GLU SEQRES 20 A 295 SER GLY GLU GLU ASP PHE ALA ALA PHE ARG ALA TRP LEU SEQRES 21 A 295 ARG CYS TYR GLY MET PRO GLY MET SER SER LEU GLN ASP SEQRES 22 A 295 ARG HIS GLY ARG THR ILE TRP PHE GLN GLY ASP PRO GLY SEQRES 23 A 295 PRO LEU ALA PRO LYS GLY ARG LYS SER SEQRES 1 B 13 DC DG DT DC DC DA EW3 DG DT DC DT DA DC SEQRES 1 C 13 DT DA DG DA DC DC DT DG DG DA DC DG DG SEQRES 1 D 295 MET PRO GLU GLY PRO GLU LEU HIS LEU ALA SER GLN PHE SEQRES 2 D 295 VAL ASN GLU ALA CYS ARG ALA LEU VAL PHE GLY GLY CYS SEQRES 3 D 295 VAL GLU LYS SER SER VAL SER ARG ASN PRO GLU VAL PRO SEQRES 4 D 295 PHE GLU SER SER ALA TYR ARG ILE SER ALA SER ALA ARG SEQRES 5 D 295 GLY LYS GLU LEU ARG LEU ILE LEU SER PRO LEU PRO GLY SEQRES 6 D 295 ALA GLN PRO GLN GLN GLU PRO LEU ALA LEU VAL PHE ARG SEQRES 7 D 295 PHE GLY MET SER GLY SER PHE GLN LEU VAL PRO ARG GLU SEQRES 8 D 295 GLU LEU PRO ARG HIS ALA HIS LEU ARG PHE TYR THR ALA SEQRES 9 D 295 PRO PRO GLY PRO ARG LEU ALA LEU CYS PHE VAL ASP ILE SEQRES 10 D 295 ARG ARG PHE GLY ARG TRP ASP LEU GLY GLY LYS TRP GLN SEQRES 11 D 295 PRO GLY ARG GLY PRO CYS VAL LEU GLN GLU TYR GLN GLN SEQRES 12 D 295 PHE ARG GLU ASN VAL LEU ARG ASN LEU ALA ASP LYS ALA SEQRES 13 D 295 PHE ASP ARG PRO ILE CYS GLU ALA LEU LEU ASP GLN ARG SEQRES 14 D 295 PHE PHE ASN GLY ILE GLY ASN TYR LEU ARG ALA GLU ILE SEQRES 15 D 295 LEU TYR ARG LEU LYS ILE PRO PRO PHE GLU LYS ALA ARG SEQRES 16 D 295 SER VAL LEU GLU ALA LEU GLN GLN HIS ARG PRO SER PRO SEQRES 17 D 295 GLU LEU THR LEU SER GLN LYS ILE ARG THR LYS LEU GLN SEQRES 18 D 295 ASN PRO ASP LEU LEU GLU LEU CYS HIS SER VAL PRO LYS SEQRES 19 D 295 GLU VAL VAL GLN LEU GLY GLY ARG GLY ARG GLY SER GLU SEQRES 20 D 295 SER GLY GLU GLU ASP PHE ALA ALA PHE ARG ALA TRP LEU SEQRES 21 D 295 ARG CYS TYR GLY MET PRO GLY MET SER SER LEU GLN ASP SEQRES 22 D 295 ARG HIS GLY ARG THR ILE TRP PHE GLN GLY ASP PRO GLY SEQRES 23 D 295 PRO LEU ALA PRO LYS GLY ARG LYS SER SEQRES 1 E 13 DC DG DT DC DC DA EW3 DG DT DC DT DA DC SEQRES 1 F 13 DT DA DG DA DC DC DT DG DG DA DC DG DG SEQRES 1 G 295 MET PRO GLU GLY PRO GLU LEU HIS LEU ALA SER GLN PHE SEQRES 2 G 295 VAL ASN GLU ALA CYS ARG ALA LEU VAL PHE GLY GLY CYS SEQRES 3 G 295 VAL GLU LYS SER SER VAL SER ARG ASN PRO GLU VAL PRO SEQRES 4 G 295 PHE GLU SER SER ALA TYR ARG ILE SER ALA SER ALA ARG SEQRES 5 G 295 GLY LYS GLU LEU ARG LEU ILE LEU SER PRO LEU PRO GLY SEQRES 6 G 295 ALA GLN PRO GLN GLN GLU PRO LEU ALA LEU VAL PHE ARG SEQRES 7 G 295 PHE GLY MET SER GLY SER PHE GLN LEU VAL PRO ARG GLU SEQRES 8 G 295 GLU LEU PRO ARG HIS ALA HIS LEU ARG PHE TYR THR ALA SEQRES 9 G 295 PRO PRO GLY PRO ARG LEU ALA LEU CYS PHE VAL ASP ILE SEQRES 10 G 295 ARG ARG PHE GLY ARG TRP ASP LEU GLY GLY LYS TRP GLN SEQRES 11 G 295 PRO GLY ARG GLY PRO CYS VAL LEU GLN GLU TYR GLN GLN SEQRES 12 G 295 PHE ARG GLU ASN VAL LEU ARG ASN LEU ALA ASP LYS ALA SEQRES 13 G 295 PHE ASP ARG PRO ILE CYS GLU ALA LEU LEU ASP GLN ARG SEQRES 14 G 295 PHE PHE ASN GLY ILE GLY ASN TYR LEU ARG ALA GLU ILE SEQRES 15 G 295 LEU TYR ARG LEU LYS ILE PRO PRO PHE GLU LYS ALA ARG SEQRES 16 G 295 SER VAL LEU GLU ALA LEU GLN GLN HIS ARG PRO SER PRO SEQRES 17 G 295 GLU LEU THR LEU SER GLN LYS ILE ARG THR LYS LEU GLN SEQRES 18 G 295 ASN PRO ASP LEU LEU GLU LEU CYS HIS SER VAL PRO LYS SEQRES 19 G 295 GLU VAL VAL GLN LEU GLY GLY ARG GLY ARG GLY SER GLU SEQRES 20 G 295 SER GLY GLU GLU ASP PHE ALA ALA PHE ARG ALA TRP LEU SEQRES 21 G 295 ARG CYS TYR GLY MET PRO GLY MET SER SER LEU GLN ASP SEQRES 22 G 295 ARG HIS GLY ARG THR ILE TRP PHE GLN GLY ASP PRO GLY SEQRES 23 G 295 PRO LEU ALA PRO LYS GLY ARG LYS SER SEQRES 1 H 13 DC DG DT DC DC DA EW3 DG DT DC DT DA DC SEQRES 1 I 13 DT DA DG DA DC DC DT DG DG DA DC DG DG HET EW3 B 7 20 HET EW3 E 7 20 HET EW3 H 7 20 HET GOL A 301 6 HETNAM EW3 [(2~{R},3~{R},4~{R},5~{R})-5-[2,4-BIS(OXIDANYLIDENE)-1, HETNAM 2 EW3 3-DIAZINAN-1-YL]-4-FLUORANYL-3-OXIDANYL-OXOLAN-2- HETNAM 3 EW3 YL]METHYL DIHYDROGEN PHOSPHATE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 EW3 3(C9 H14 F N2 O8 P) FORMUL 10 GOL C3 H8 O3 FORMUL 11 HOH *216(H2 O) HELIX 1 AA1 GLU A 3 ARG A 19 1 17 HELIX 2 AA2 GLU A 140 ARG A 150 1 11 HELIX 3 AA3 ASP A 154 ARG A 159 5 6 HELIX 4 AA4 PRO A 160 LEU A 165 1 6 HELIX 5 AA5 GLY A 175 LYS A 187 1 13 HELIX 6 AA6 LYS A 193 ALA A 200 1 8 HELIX 7 AA7 ASP A 224 LEU A 239 1 16 HELIX 8 AA8 GLU A 251 LEU A 260 1 10 HELIX 9 AA9 GLU D 3 ARG D 19 1 17 HELIX 10 AB1 GLU D 140 ARG D 150 1 11 HELIX 11 AB2 ASP D 154 ARG D 159 5 6 HELIX 12 AB3 PRO D 160 LEU D 165 1 6 HELIX 13 AB4 GLY D 175 LYS D 187 1 13 HELIX 14 AB5 LYS D 193 ALA D 200 1 8 HELIX 15 AB6 ASP D 224 GLY D 240 1 17 HELIX 16 AB7 PHE D 253 LEU D 260 1 8 HELIX 17 AB8 GLU G 3 ARG G 19 1 17 HELIX 18 AB9 GLU G 140 ARG G 150 1 11 HELIX 19 AC1 ASP G 154 ARG G 159 5 6 HELIX 20 AC2 PRO G 160 LEU G 165 1 6 HELIX 21 AC3 GLY G 175 LYS G 187 1 13 HELIX 22 AC4 LYS G 193 ALA G 200 1 8 HELIX 23 AC5 ASP G 224 LEU G 239 1 16 HELIX 24 AC6 PHE G 253 LEU G 260 1 8 SHEET 1 AA1 8 GLY A 83 PRO A 89 0 SHEET 2 AA1 8 LEU A 110 ASP A 116 -1 O CYS A 113 N GLN A 86 SHEET 3 AA1 8 ALA A 97 THR A 103 -1 N LEU A 99 O PHE A 114 SHEET 4 AA1 8 PHE A 23 LYS A 29 -1 N GLU A 28 O ARG A 100 SHEET 5 AA1 8 GLU A 41 ARG A 52 -1 O TYR A 45 N PHE A 23 SHEET 6 AA1 8 GLU A 55 PRO A 62 -1 O ARG A 57 N SER A 50 SHEET 7 AA1 8 LEU A 73 ARG A 78 -1 O LEU A 73 N LEU A 60 SHEET 8 AA1 8 ARG A 122 LEU A 125 -1 O ARG A 122 N ARG A 78 SHEET 1 AA2 2 SER A 269 GLN A 272 0 SHEET 2 AA2 2 THR A 278 PHE A 281 -1 O PHE A 281 N SER A 269 SHEET 1 AA3 5 PHE D 23 CYS D 26 0 SHEET 2 AA3 5 GLU D 41 ARG D 52 -1 O TYR D 45 N PHE D 23 SHEET 3 AA3 5 GLU D 55 PRO D 62 -1 O ARG D 57 N SER D 50 SHEET 4 AA3 5 LEU D 73 ARG D 78 -1 O LEU D 73 N LEU D 60 SHEET 5 AA3 5 ARG D 122 LEU D 125 -1 O ARG D 122 N ARG D 78 SHEET 1 AA4 4 GLU D 28 LYS D 29 0 SHEET 2 AA4 4 ALA D 97 TYR D 102 -1 O ARG D 100 N GLU D 28 SHEET 3 AA4 4 LEU D 110 ASP D 116 -1 O LEU D 112 N PHE D 101 SHEET 4 AA4 4 GLY D 83 PRO D 89 -1 N VAL D 88 O ALA D 111 SHEET 1 AA5 2 SER D 269 GLN D 272 0 SHEET 2 AA5 2 THR D 278 PHE D 281 -1 O PHE D 281 N SER D 269 SHEET 1 AA6 4 VAL G 27 LYS G 29 0 SHEET 2 AA6 4 ALA G 97 TYR G 102 -1 O ARG G 100 N GLU G 28 SHEET 3 AA6 4 ALA G 111 ASP G 116 -1 O PHE G 114 N LEU G 99 SHEET 4 AA6 4 GLY G 83 VAL G 88 -1 N VAL G 88 O ALA G 111 SHEET 1 AA7 4 SER G 48 ARG G 52 0 SHEET 2 AA7 4 GLU G 55 LEU G 60 -1 O ARG G 57 N SER G 50 SHEET 3 AA7 4 LEU G 73 ARG G 78 -1 O LEU G 73 N LEU G 60 SHEET 4 AA7 4 ARG G 122 ASP G 124 -1 O ARG G 122 N ARG G 78 SHEET 1 AA8 2 SER G 269 GLN G 272 0 SHEET 2 AA8 2 THR G 278 PHE G 281 -1 O PHE G 281 N SER G 269 LINK O3' DA B 6 P EW3 B 7 1555 1555 1.61 LINK O3' EW3 B 7 P DG B 8 1555 1555 1.61 LINK O3' DA E 6 P EW3 E 7 1555 1555 1.61 LINK O3' EW3 E 7 P DG E 8 1555 1555 1.61 LINK O3' DA H 6 P EW3 H 7 1555 1555 1.60 LINK O3' EW3 H 7 P DG H 8 1555 1555 1.62 CISPEP 1 GLN A 67 PRO A 68 0 -16.64 CISPEP 2 GLN D 67 PRO D 68 0 -17.14 CRYST1 73.938 109.635 171.944 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013525 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009121 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005816 0.00000