HEADER TRANSFERASE 10-FEB-20 6LX1 TITLE POTATO D-ENZYME COMPLEXED WITH ACARBOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 4-ALPHA-GLUCANOTRANSFERASE, CHLOROPLASTIC/AMYLOPLASTIC; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AMYLOMALTASE,DISPROPORTIONATING ENZYME,D-ENZYME; COMPND 5 EC: 2.4.1.25; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SOLANUM TUBEROSUM; SOURCE 3 ORGANISM_COMMON: POTATO; SOURCE 4 ORGANISM_TAXID: 4113; SOURCE 5 GENE: DPEP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS D-ENZYME, DISPROPORTIONATING ENZYME, POTATO, CYCLOAMYLOSE, SOLANUM KEYWDS 2 TUBEROSUM, PLANT PROTEIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.UNNO,K.IMAMURA REVDAT 4 29-NOV-23 6LX1 1 REMARK REVDAT 3 07-OCT-20 6LX1 1 JRNL REVDAT 2 23-SEP-20 6LX1 1 JRNL REVDAT 1 26-AUG-20 6LX1 0 JRNL AUTH K.IMAMURA,T.MATSUURA,A.NAKAGAWA,S.KITAMURA,M.KUSUNOKI, JRNL AUTH 2 T.TAKAHA,H.UNNO JRNL TITL STRUCTURAL ANALYSIS AND REACTION MECHANISM OF THE JRNL TITL 2 DISPROPORTIONATING ENZYME (D-ENZYME) FROM POTATO. JRNL REF PROTEIN SCI. V. 29 2085 2020 JRNL REFN ESSN 1469-896X JRNL PMID 32808707 JRNL DOI 10.1002/PRO.3932 REMARK 2 REMARK 2 RESOLUTION. 2.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 44986 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2414 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.03 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3248 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.1980 REMARK 3 BIN FREE R VALUE SET COUNT : 190 REMARK 3 BIN FREE R VALUE : 0.2380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4120 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 455 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.04000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.141 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.136 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4281 ; 0.012 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3913 ; 0.035 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5814 ; 1.693 ; 1.647 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9095 ; 2.334 ; 1.587 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 512 ; 6.438 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 233 ;34.317 ;22.446 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 696 ;13.871 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;19.434 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 541 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4763 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 919 ; 0.027 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2057 ; 3.143 ; 3.092 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2056 ; 3.133 ; 3.091 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2566 ; 4.101 ; 4.620 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2567 ; 4.106 ; 4.620 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2223 ; 4.339 ; 3.587 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2224 ; 4.338 ; 3.588 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3249 ; 6.531 ; 5.184 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5133 ; 7.985 ;37.713 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4999 ; 7.878 ;37.096 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6LX1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1300015371. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-APR-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : BRUKER DIP-6040 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46983 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.030 REMARK 200 RESOLUTION RANGE LOW (A) : 60.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 32.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.03 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.32200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1X1N REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG 8000, 100 MM HEPES, PH 7.6, REMARK 280 100 MM CACL2, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 87.34900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 87.34900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 34.58550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.14650 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 34.58550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.14650 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 87.34900 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 34.58550 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 60.14650 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 87.34900 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 34.58550 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 60.14650 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 69.17100 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 87.34900 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 604 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1082 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 ASN A 78 REMARK 465 GLU A 79 REMARK 465 ASP A 277 REMARK 465 ALA A 278 REMARK 465 PHE A 279 REMARK 465 SER A 280 REMARK 465 GLU A 281 REMARK 465 THR A 282 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 3 170.04 -58.54 REMARK 500 ARG A 76 53.21 -93.77 REMARK 500 PRO A 116 130.30 -38.61 REMARK 500 ASN A 256 45.92 -147.51 REMARK 500 LEU A 341 33.02 -93.25 REMARK 500 SER A 398 -108.51 -128.56 REMARK 500 SER A 445 46.56 78.72 REMARK 500 ALA A 488 -9.98 76.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 603 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 180 OD1 REMARK 620 2 HOH A 710 O 87.2 REMARK 620 3 HOH A 791 O 136.9 131.3 REMARK 620 4 HOH A 822 O 87.7 144.4 71.3 REMARK 620 5 HOH A 975 O 93.0 73.9 113.7 71.2 REMARK 620 6 HOH A 998 O 84.3 135.7 55.5 78.6 149.8 REMARK 620 7 HOH A1058 O 89.3 76.2 83.6 138.9 149.9 60.3 REMARK 620 8 HOH A1120 O 171.1 86.5 51.5 93.7 79.2 104.7 95.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 604 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 189 OE1 REMARK 620 2 GLU A 189 OE2 48.7 REMARK 620 3 GLU A 189 OE1 0.0 48.7 REMARK 620 4 GLU A 189 OE2 48.7 0.0 48.7 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1X1N RELATED DB: PDB DBREF 6LX1 A 1 524 UNP Q06801 DPEP_SOLTU 53 576 SEQRES 1 A 524 ALA VAL PRO ALA VAL GLY GLU ASP PHE PRO ILE ASP TYR SEQRES 2 A 524 ALA ASP TRP LEU PRO LYS ARG ASP PRO ASN ASP ARG ARG SEQRES 3 A 524 ARG ALA GLY ILE LEU LEU HIS PRO THR SER PHE PRO GLY SEQRES 4 A 524 PRO TYR GLY ILE GLY ASP LEU GLY PRO GLN ALA PHE LYS SEQRES 5 A 524 PHE LEU ASP TRP LEU HIS LEU ALA GLY CYS SER LEU TRP SEQRES 6 A 524 GLN VAL LEU PRO LEU VAL PRO PRO GLY LYS ARG GLY ASN SEQRES 7 A 524 GLU ASP GLY SER PRO TYR SER GLY GLN ASP ALA ASN CYS SEQRES 8 A 524 GLY ASN THR LEU LEU ILE SER LEU GLU GLU LEU VAL ASP SEQRES 9 A 524 ASP GLY LEU LEU LYS MET GLU GLU LEU PRO GLU PRO LEU SEQRES 10 A 524 PRO THR ASP ARG VAL ASN TYR SER THR ILE SER GLU ILE SEQRES 11 A 524 LYS ASP PRO LEU ILE THR LYS ALA ALA LYS ARG LEU LEU SEQRES 12 A 524 SER SER GLU GLY GLU LEU LYS ASP GLN LEU GLU ASN PHE SEQRES 13 A 524 ARG ARG ASP PRO ASN ILE SER SER TRP LEU GLU ASP ALA SEQRES 14 A 524 ALA TYR PHE ALA ALA ILE ASP ASN SER VAL ASN THR ILE SEQRES 15 A 524 SER TRP TYR ASP TRP PRO GLU PRO LEU LYS ASN ARG HIS SEQRES 16 A 524 LEU ALA ALA LEU GLU GLU VAL TYR GLN SER GLU LYS ASP SEQRES 17 A 524 PHE ILE ASP ILE PHE ILE ALA GLN GLN PHE LEU PHE GLN SEQRES 18 A 524 ARG GLN TRP LYS LYS VAL ARG ASP TYR ALA ARG SER LYS SEQRES 19 A 524 GLY ILE SER ILE MET GLY ASP MET PRO ILE TYR VAL GLY SEQRES 20 A 524 TYR HIS SER ALA ASP VAL TRP ALA ASN LYS LYS GLN PHE SEQRES 21 A 524 LEU LEU ASN ARG LYS GLY PHE PRO LEU ILE VAL SER GLY SEQRES 22 A 524 VAL PRO PRO ASP ALA PHE SER GLU THR GLY GLN LEU TRP SEQRES 23 A 524 GLY SER PRO LEU TYR ASP TRP LYS ALA MET GLU LYS ASP SEQRES 24 A 524 GLY PHE SER TRP TRP VAL ARG ARG ILE GLN ARG ALA THR SEQRES 25 A 524 ASP LEU PHE ASP GLU PHE ARG ILE ASP HIS PHE ARG GLY SEQRES 26 A 524 PHE ALA GLY PHE TRP ALA VAL PRO SER GLU GLU LYS ILE SEQRES 27 A 524 ALA ILE LEU GLY ARG TRP LYS VAL GLY PRO GLY LYS PRO SEQRES 28 A 524 LEU PHE ASP ALA ILE LEU GLN ALA VAL GLY LYS ILE ASN SEQRES 29 A 524 ILE ILE ALA GLU ASP LEU GLY VAL ILE THR GLU ASP VAL SEQRES 30 A 524 VAL GLN LEU ARG LYS SER ILE GLU ALA PRO GLY MET ALA SEQRES 31 A 524 VAL LEU GLN PHE ALA PHE GLY SER ASP ALA GLU ASN PRO SEQRES 32 A 524 HIS LEU PRO HIS ASN HIS GLU GLN ASN GLN VAL VAL TYR SEQRES 33 A 524 THR GLY THR HIS ASP ASN ASP THR ILE ARG GLY TRP TRP SEQRES 34 A 524 ASP THR LEU PRO GLN GLU GLU LYS SER ASN VAL LEU LYS SEQRES 35 A 524 TYR LEU SER ASN ILE GLU GLU GLU GLU ILE SER ARG GLY SEQRES 36 A 524 LEU ILE GLU GLY ALA VAL SER SER VAL ALA ARG ILE ALA SEQRES 37 A 524 ILE ILE PRO MET GLN ASP VAL LEU GLY LEU GLY SER ASP SEQRES 38 A 524 SER ARG MET ASN ILE PRO ALA THR GLN PHE GLY ASN TRP SEQRES 39 A 524 SER TRP ARG ILE PRO SER SER THR SER PHE ASP ASN LEU SEQRES 40 A 524 ASP ALA GLU ALA LYS LYS LEU ARG ASP ILE LEU ALA THR SEQRES 41 A 524 TYR GLY ARG LEU HET ASO B 1 11 HET AC1 B 2 21 HET GOL A 601 6 HET GOL A 602 6 HET CA A 603 1 HET MG A 604 1 HETNAM ASO 1,5-ANHYDRO-D-GLUCITOL HETNAM AC1 4,6-DIDEOXY-4-{[(1S,4R,5S,6S)-4,5,6-TRIHYDROXY-3- HETNAM 2 AC1 (HYDROXYMETHYL)CYCLOHEX-2-EN-1-YL]AMINO}-ALPHA-D- HETNAM 3 AC1 GLUCOPYRANOSE HETNAM GOL GLYCEROL HETNAM CA CALCIUM ION HETNAM MG MAGNESIUM ION HETSYN ASO 1,5-ANHYDROSORBITOL HETSYN AC1 6-METHYL-5-(4,5,6-TRIHYDROXY-3-HYDROXYMETHYL-CYCLOHEX- HETSYN 2 AC1 2-ENYLAMINO)-TETRAHYDRO-PYRAN-2,3,4-TRIOL; 4,6- HETSYN 3 AC1 DIDEOXY-4-{[(1S,4R,5S,6S)-4,5,6-TRIHYDROXY-3- HETSYN 4 AC1 (HYDROXYMETHYL)CYCLOHEX-2-EN-1-YL]AMINO}-ALPHA-D- HETSYN 5 AC1 GLUCOSE; 4,6-DIDEOXY-4-{[(1S,4R,5S,6S)-4,5,6- HETSYN 6 AC1 TRIHYDROXY-3-(HYDROXYMETHYL)CYCLOHEX-2-EN-1-YL]AMINO}- HETSYN 7 AC1 D-GLUCOSE; 4,6-DIDEOXY-4-{[(1S,4R,5S,6S)-4,5,6- HETSYN 8 AC1 TRIHYDROXY-3-(HYDROXYMETHYL)CYCLOHEX-2-EN-1-YL]AMINO}- HETSYN 9 AC1 GLUCOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ASO C6 H12 O5 FORMUL 2 AC1 C13 H23 N O8 FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 CA CA 2+ FORMUL 6 MG MG 2+ FORMUL 7 HOH *455(H2 O) HELIX 1 AA1 ASP A 12 TRP A 16 5 5 HELIX 2 AA2 ASP A 21 ARG A 25 5 5 HELIX 3 AA3 HIS A 33 PHE A 37 5 5 HELIX 4 AA4 GLY A 47 GLY A 61 1 15 HELIX 5 AA5 ASN A 93 ILE A 97 5 5 HELIX 6 AA6 SER A 98 ASP A 105 1 8 HELIX 7 AA7 LYS A 109 LEU A 113 5 5 HELIX 8 AA8 THR A 126 SER A 145 1 20 HELIX 9 AA9 GLY A 147 ASP A 159 1 13 HELIX 10 AB1 ASP A 159 ASN A 180 1 22 HELIX 11 AB2 SER A 183 TRP A 187 5 5 HELIX 12 AB3 PRO A 188 ASN A 193 1 6 HELIX 13 AB4 HIS A 195 GLU A 206 1 12 HELIX 14 AB5 GLU A 206 LYS A 234 1 29 HELIX 15 AB6 SER A 250 ALA A 255 1 6 HELIX 16 AB7 ASN A 256 PHE A 260 5 5 HELIX 17 AB8 ASP A 292 ASP A 299 1 8 HELIX 18 AB9 PHE A 301 PHE A 315 1 15 HELIX 19 AC1 HIS A 322 PHE A 326 5 5 HELIX 20 AC2 ILE A 338 GLY A 342 5 5 HELIX 21 AC3 GLY A 349 GLY A 361 1 13 HELIX 22 AC4 THR A 374 ILE A 384 1 11 HELIX 23 AC5 GLN A 393 ALA A 395 5 3 HELIX 24 AC6 LEU A 405 HIS A 409 5 5 HELIX 25 AC7 THR A 424 THR A 431 1 8 HELIX 26 AC8 PRO A 433 LEU A 444 1 12 HELIX 27 AC9 GLU A 448 GLU A 450 5 3 HELIX 28 AD1 GLU A 451 SER A 462 1 12 HELIX 29 AD2 MET A 472 LEU A 476 1 5 HELIX 30 AD3 GLY A 479 ARG A 483 5 5 HELIX 31 AD4 SER A 503 ASN A 506 5 4 HELIX 32 AD5 LEU A 507 TYR A 521 1 15 SHEET 1 AA1 8 ILE A 365 ALA A 367 0 SHEET 2 AA1 8 GLU A 317 ASP A 321 1 N PHE A 318 O ILE A 366 SHEET 3 AA1 8 SER A 237 PRO A 243 1 N MET A 242 O ASP A 321 SHEET 4 AA1 8 LEU A 64 GLN A 66 1 N TRP A 65 O MET A 239 SHEET 5 AA1 8 ARG A 27 LEU A 31 1 N ILE A 30 O GLN A 66 SHEET 6 AA1 8 ILE A 467 PRO A 471 1 O ALA A 468 N GLY A 29 SHEET 7 AA1 8 GLN A 413 TYR A 416 1 N VAL A 415 O ILE A 467 SHEET 8 AA1 8 GLY A 388 VAL A 391 1 N ALA A 390 O TYR A 416 SHEET 1 AA2 4 GLN A 284 PRO A 289 0 SHEET 2 AA2 4 ILE A 270 VAL A 274 -1 N SER A 272 O GLY A 287 SHEET 3 AA2 4 GLY A 328 PRO A 333 -1 O VAL A 332 N VAL A 271 SHEET 4 AA2 4 ARG A 343 VAL A 346 -1 O LYS A 345 N PHE A 329 LINK OD2 ASP A 321 C1 ASO B 1 1555 1555 1.45 LINK O4 ASO B 1 C1 AC1 B 2 1555 1555 1.41 LINK OD1 ASN A 180 CA CA A 603 1555 1555 2.30 LINK OE1 GLU A 189 MG MG A 604 1555 1555 2.92 LINK OE2 GLU A 189 MG MG A 604 1555 1555 2.11 LINK OE1 GLU A 189 MG MG A 604 1555 4555 2.92 LINK OE2 GLU A 189 MG MG A 604 1555 4555 2.11 LINK CA CA A 603 O HOH A 710 1555 8455 2.46 LINK CA CA A 603 O HOH A 791 1555 1555 2.68 LINK CA CA A 603 O HOH A 822 1555 1555 2.42 LINK CA CA A 603 O HOH A 975 1555 8455 2.30 LINK CA CA A 603 O HOH A 998 1555 1555 2.40 LINK CA CA A 603 O HOH A1058 1555 1555 2.29 LINK CA CA A 603 O HOH A1120 1555 8455 2.31 CRYST1 69.171 120.293 174.698 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014457 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008313 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005724 0.00000