HEADER DNA BINDING PROTEIN 11-FEB-20 6LXN TITLE CRYSTAL STRUCTURE OF C-TERMINAL DNA-BINDING DOMAIN OF ESCHERICHIA COLI TITLE 2 OMPR IN COMPLEX WITH F1-DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (27-MER); COMPND 3 CHAIN: C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (27-MER); COMPND 7 CHAIN: D; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: TRANSCRIPTIONAL REGULATORY PROTEIN OMPR; COMPND 11 CHAIN: A, B; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 4 ORGANISM_TAXID: 562; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 8 ORGANISM_TAXID: 83333; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 11 ORGANISM_TAXID: 562; SOURCE 12 GENE: OMPR, NCTC10764_03768; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS DNA BINDING PROTEIN TRANSCRIPTION FACTOR, TRANSCRIPTION, DNA BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.SADOTRA,C.CHEN,C.H.HSU REVDAT 2 29-NOV-23 6LXN 1 REMARK REVDAT 1 23-DEC-20 6LXN 0 JRNL AUTH S.SADOTRA,Y.C.LOU,H.C.TANG,Y.C.CHIU,C.H.HSU,C.CHEN JRNL TITL STRUCTURAL BASIS FOR PROMOTER DNA RECOGNITION BY THE JRNL TITL 2 RESPONSE REGULATOR OMPR. JRNL REF J.STRUCT.BIOL. V. 213 07638 2020 JRNL REFN ESSN 1095-8657 JRNL PMID 33152421 JRNL DOI 10.1016/J.JSB.2020.107638 REMARK 2 REMARK 2 RESOLUTION. 2.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.73 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 8766 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.200 REMARK 3 FREE R VALUE TEST SET COUNT : 894 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.7300 - 5.3200 0.98 1487 168 0.1473 0.2086 REMARK 3 2 5.3200 - 4.2300 1.00 1501 171 0.1550 0.2142 REMARK 3 3 4.2300 - 3.7000 1.00 1502 171 0.1682 0.2275 REMARK 3 4 3.7000 - 3.3600 1.00 1482 172 0.2002 0.3025 REMARK 3 5 3.3600 - 3.1200 0.76 1128 127 0.2132 0.2973 REMARK 3 6 3.1200 - 2.9400 0.52 772 85 0.2589 0.4367 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.358 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.867 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 66.21 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 64.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2989 REMARK 3 ANGLE : 1.128 4266 REMARK 3 CHIRALITY : 0.055 464 REMARK 3 PLANARITY : 0.008 362 REMARK 3 DIHEDRAL : 20.483 1603 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 19 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.5286 -32.6345 -0.9588 REMARK 3 T TENSOR REMARK 3 T11: 2.0849 T22: 2.2086 REMARK 3 T33: 1.8269 T12: -0.1753 REMARK 3 T13: 0.2649 T23: -0.0074 REMARK 3 L TENSOR REMARK 3 L11: 0.2037 L22: 0.3121 REMARK 3 L33: 0.1551 L12: -0.2125 REMARK 3 L13: -0.1744 L23: 0.1588 REMARK 3 S TENSOR REMARK 3 S11: -0.0078 S12: 0.0103 S13: -0.0033 REMARK 3 S21: -0.0105 S22: 0.0042 S23: -0.0126 REMARK 3 S31: 0.0133 S32: -0.0190 S33: -0.0027 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 21 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.2157 -12.7881 42.8769 REMARK 3 T TENSOR REMARK 3 T11: 0.3217 T22: 0.2818 REMARK 3 T33: 0.3217 T12: 0.1888 REMARK 3 T13: 0.1392 T23: 0.0566 REMARK 3 L TENSOR REMARK 3 L11: 0.1270 L22: 0.0337 REMARK 3 L33: 0.0778 L12: -0.0611 REMARK 3 L13: -0.0077 L23: 0.0099 REMARK 3 S TENSOR REMARK 3 S11: -0.0060 S12: 0.0231 S13: 0.0198 REMARK 3 S21: 0.2070 S22: 0.0702 S23: -0.0597 REMARK 3 S31: -0.3701 S32: -0.0833 S33: -0.1148 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 29 THROUGH 47 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.5361 -10.0670 40.4979 REMARK 3 T TENSOR REMARK 3 T11: 0.4661 T22: 0.2538 REMARK 3 T33: 0.3491 T12: 0.0048 REMARK 3 T13: 0.1594 T23: 0.1804 REMARK 3 L TENSOR REMARK 3 L11: 0.0577 L22: 0.0640 REMARK 3 L33: 0.0083 L12: -0.0229 REMARK 3 L13: 0.0230 L23: -0.0146 REMARK 3 S TENSOR REMARK 3 S11: -0.0261 S12: 0.0141 S13: 0.0354 REMARK 3 S21: 0.0628 S22: 0.0276 S23: 0.0165 REMARK 3 S31: -0.2248 S32: -0.0122 S33: 0.0606 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 48 THROUGH 56 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.8701 -24.4747 48.2034 REMARK 3 T TENSOR REMARK 3 T11: -0.5654 T22: 0.0140 REMARK 3 T33: 0.2300 T12: -0.2675 REMARK 3 T13: 0.4239 T23: 0.1169 REMARK 3 L TENSOR REMARK 3 L11: 0.1801 L22: 0.1391 REMARK 3 L33: 0.0590 L12: 0.1183 REMARK 3 L13: -0.0383 L23: -0.0854 REMARK 3 S TENSOR REMARK 3 S11: 0.0174 S12: -0.0629 S13: -0.0338 REMARK 3 S21: -0.0371 S22: -0.1846 S23: 0.1055 REMARK 3 S31: 0.0897 S32: 0.0366 S33: -0.1931 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 57 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.1343 -33.1598 46.8407 REMARK 3 T TENSOR REMARK 3 T11: 0.1770 T22: 0.1532 REMARK 3 T33: 0.1709 T12: -0.0165 REMARK 3 T13: -0.0446 T23: 0.1973 REMARK 3 L TENSOR REMARK 3 L11: 0.0205 L22: 0.0204 REMARK 3 L33: 0.0285 L12: 0.0104 REMARK 3 L13: 0.0021 L23: -0.0208 REMARK 3 S TENSOR REMARK 3 S11: 0.0655 S12: 0.0285 S13: -0.1627 REMARK 3 S21: -0.1832 S22: -0.0514 S23: 0.0517 REMARK 3 S31: 0.0777 S32: -0.0150 S33: -0.0029 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 66 THROUGH 77 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.9582 -37.4956 47.6717 REMARK 3 T TENSOR REMARK 3 T11: 0.4918 T22: 0.2548 REMARK 3 T33: 0.4285 T12: 0.1852 REMARK 3 T13: -0.0241 T23: -0.1837 REMARK 3 L TENSOR REMARK 3 L11: 0.2237 L22: 0.1355 REMARK 3 L33: 0.5295 L12: 0.1360 REMARK 3 L13: 0.0571 L23: 0.0907 REMARK 3 S TENSOR REMARK 3 S11: 0.0238 S12: 0.0033 S13: -0.1617 REMARK 3 S21: -0.0615 S22: 0.0552 S23: 0.1337 REMARK 3 S31: -0.0717 S32: 0.1208 S33: -0.0763 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 78 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.0558 -23.1565 48.5738 REMARK 3 T TENSOR REMARK 3 T11: 0.1258 T22: 0.1251 REMARK 3 T33: 0.4166 T12: -0.2048 REMARK 3 T13: 0.0634 T23: -0.0857 REMARK 3 L TENSOR REMARK 3 L11: 0.0830 L22: 0.0762 REMARK 3 L33: 0.0091 L12: -0.0542 REMARK 3 L13: 0.0173 L23: 0.0036 REMARK 3 S TENSOR REMARK 3 S11: -0.0222 S12: 0.0848 S13: 0.1211 REMARK 3 S21: -0.0374 S22: -0.0025 S23: -0.1085 REMARK 3 S31: -0.1199 S32: 0.1516 S33: -0.0530 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 99 THROUGH 111 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.8950 -20.3785 57.1605 REMARK 3 T TENSOR REMARK 3 T11: 0.3684 T22: 0.2413 REMARK 3 T33: 0.4132 T12: -0.1226 REMARK 3 T13: 0.1471 T23: -0.1047 REMARK 3 L TENSOR REMARK 3 L11: 0.0487 L22: 0.2714 REMARK 3 L33: 0.1258 L12: 0.0832 REMARK 3 L13: 0.0099 L23: -0.1064 REMARK 3 S TENSOR REMARK 3 S11: 0.0882 S12: -0.1912 S13: 0.4209 REMARK 3 S21: 0.2800 S22: -0.0048 S23: 0.1625 REMARK 3 S31: -0.2541 S32: 0.0558 S33: 0.1730 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.1251 -25.2769 62.5729 REMARK 3 T TENSOR REMARK 3 T11: 0.4510 T22: 0.4410 REMARK 3 T33: 0.5241 T12: 0.0255 REMARK 3 T13: 0.1532 T23: -0.0258 REMARK 3 L TENSOR REMARK 3 L11: 0.0707 L22: 0.0018 REMARK 3 L33: 0.0846 L12: -0.0022 REMARK 3 L13: 0.0609 L23: 0.0008 REMARK 3 S TENSOR REMARK 3 S11: 0.0185 S12: -0.1590 S13: 0.2837 REMARK 3 S21: 0.0345 S22: 0.0922 S23: 0.0082 REMARK 3 S31: -0.2591 S32: -0.1710 S33: 0.0201 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 13 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.9259 -14.0128 18.3489 REMARK 3 T TENSOR REMARK 3 T11: 0.2960 T22: 0.3699 REMARK 3 T33: 0.6061 T12: 0.1564 REMARK 3 T13: -0.1793 T23: 0.1313 REMARK 3 L TENSOR REMARK 3 L11: 0.0308 L22: 0.0242 REMARK 3 L33: 0.0606 L12: -0.0002 REMARK 3 L13: -0.0350 L23: 0.0078 REMARK 3 S TENSOR REMARK 3 S11: 0.1154 S12: 0.0119 S13: 0.0319 REMARK 3 S21: -0.0135 S22: 0.0965 S23: 0.0097 REMARK 3 S31: -0.0358 S32: -0.0924 S33: 0.0138 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 21 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.8062 -15.6681 11.4498 REMARK 3 T TENSOR REMARK 3 T11: 0.8881 T22: 0.8422 REMARK 3 T33: 1.0350 T12: 0.0620 REMARK 3 T13: -0.2808 T23: 0.3558 REMARK 3 L TENSOR REMARK 3 L11: 0.0238 L22: 0.0797 REMARK 3 L33: 0.0574 L12: 0.0078 REMARK 3 L13: 0.0295 L23: -0.0325 REMARK 3 S TENSOR REMARK 3 S11: 0.0141 S12: 0.1931 S13: -0.1131 REMARK 3 S21: -0.0450 S22: -0.0763 S23: 0.0141 REMARK 3 S31: -0.1428 S32: -0.1531 S33: -0.0022 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 29 THROUGH 40 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.8036 -10.1674 11.2307 REMARK 3 T TENSOR REMARK 3 T11: 0.8382 T22: 0.9010 REMARK 3 T33: 0.3737 T12: 0.1282 REMARK 3 T13: 0.0416 T23: 0.3060 REMARK 3 L TENSOR REMARK 3 L11: 0.0169 L22: 0.0043 REMARK 3 L33: 0.0149 L12: -0.0119 REMARK 3 L13: -0.0131 L23: 0.0096 REMARK 3 S TENSOR REMARK 3 S11: 0.0484 S12: 0.0217 S13: 0.0860 REMARK 3 S21: 0.0487 S22: 0.0968 S23: 0.0900 REMARK 3 S31: -0.0728 S32: -0.1393 S33: -0.0083 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 41 THROUGH 47 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.0081 -23.7172 15.8337 REMARK 3 T TENSOR REMARK 3 T11: 0.4872 T22: 0.4834 REMARK 3 T33: 0.4276 T12: -0.0360 REMARK 3 T13: -0.0763 T23: 0.1036 REMARK 3 L TENSOR REMARK 3 L11: 0.0083 L22: 0.0152 REMARK 3 L33: 0.0174 L12: -0.0049 REMARK 3 L13: 0.0104 L23: -0.0058 REMARK 3 S TENSOR REMARK 3 S11: 0.2334 S12: 0.0344 S13: -0.0848 REMARK 3 S21: -0.0696 S22: -0.0363 S23: 0.0277 REMARK 3 S31: 0.0253 S32: -0.0571 S33: -0.0009 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 48 THROUGH 56 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.1192 -27.6406 27.2313 REMARK 3 T TENSOR REMARK 3 T11: 0.5283 T22: 0.4748 REMARK 3 T33: 0.4184 T12: -0.5934 REMARK 3 T13: -0.0685 T23: 0.0955 REMARK 3 L TENSOR REMARK 3 L11: 0.1111 L22: 0.0093 REMARK 3 L33: 0.0001 L12: -0.0324 REMARK 3 L13: -0.0079 L23: 0.0011 REMARK 3 S TENSOR REMARK 3 S11: 0.0261 S12: 0.0004 S13: 0.0230 REMARK 3 S21: 0.0167 S22: 0.0156 S23: 0.0903 REMARK 3 S31: 0.0332 S32: -0.0318 S33: 0.1602 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 57 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.2585 -32.6693 18.3211 REMARK 3 T TENSOR REMARK 3 T11: 0.7912 T22: 0.2049 REMARK 3 T33: 0.5420 T12: -0.1147 REMARK 3 T13: -0.1921 T23: 0.0351 REMARK 3 L TENSOR REMARK 3 L11: 0.0689 L22: 0.0111 REMARK 3 L33: 0.0031 L12: 0.0224 REMARK 3 L13: 0.0126 L23: 0.0069 REMARK 3 S TENSOR REMARK 3 S11: -0.0237 S12: 0.0937 S13: -0.0463 REMARK 3 S21: -0.2919 S22: 0.1139 S23: -0.0960 REMARK 3 S31: 0.0955 S32: -0.0332 S33: 0.0627 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 66 THROUGH 77 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.0514 -35.2065 18.4993 REMARK 3 T TENSOR REMARK 3 T11: 0.7182 T22: 0.4898 REMARK 3 T33: 0.4547 T12: 0.0536 REMARK 3 T13: -0.0099 T23: 0.0573 REMARK 3 L TENSOR REMARK 3 L11: 0.0148 L22: 0.1947 REMARK 3 L33: 0.0518 L12: 0.0560 REMARK 3 L13: 0.0269 L23: 0.0867 REMARK 3 S TENSOR REMARK 3 S11: -0.0713 S12: -0.0886 S13: -0.1138 REMARK 3 S21: -0.0018 S22: 0.0147 S23: 0.0056 REMARK 3 S31: 0.1672 S32: 0.1673 S33: 0.0001 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 78 THROUGH 87 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.0694 -20.3137 18.0036 REMARK 3 T TENSOR REMARK 3 T11: 0.2306 T22: 0.1169 REMARK 3 T33: 0.2308 T12: -0.0625 REMARK 3 T13: 0.1112 T23: 0.1819 REMARK 3 L TENSOR REMARK 3 L11: 0.0829 L22: 0.0524 REMARK 3 L33: 0.2220 L12: -0.0653 REMARK 3 L13: 0.0607 L23: -0.0328 REMARK 3 S TENSOR REMARK 3 S11: 0.0270 S12: 0.0720 S13: 0.1508 REMARK 3 S21: -0.1477 S22: 0.0894 S23: -0.0075 REMARK 3 S31: -0.0666 S32: 0.0175 S33: 0.3499 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 88 THROUGH 102 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.3296 -12.6111 26.4988 REMARK 3 T TENSOR REMARK 3 T11: 0.5270 T22: 0.1689 REMARK 3 T33: 0.5133 T12: 0.0079 REMARK 3 T13: 0.0687 T23: 0.0003 REMARK 3 L TENSOR REMARK 3 L11: 0.0261 L22: 0.0311 REMARK 3 L33: 0.3904 L12: -0.0262 REMARK 3 L13: -0.0455 L23: 0.0867 REMARK 3 S TENSOR REMARK 3 S11: 0.0638 S12: -0.0292 S13: 0.0415 REMARK 3 S21: 0.0466 S22: 0.1582 S23: -0.0121 REMARK 3 S31: -0.0138 S32: -0.0894 S33: 0.0330 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: NULL REMARK 3 ORIGIN FOR THE GROUP (A): 3.8459 -22.8676 28.9120 REMARK 3 T TENSOR REMARK 3 T11: 0.2563 T22: 0.2515 REMARK 3 T33: 0.3714 T12: 0.0161 REMARK 3 T13: 0.0967 T23: 0.0964 REMARK 3 L TENSOR REMARK 3 L11: 0.0775 L22: 0.7873 REMARK 3 L33: 0.9178 L12: 0.1987 REMARK 3 L13: 0.2331 L23: 0.3744 REMARK 3 S TENSOR REMARK 3 S11: 0.0399 S12: 0.1723 S13: 0.3162 REMARK 3 S21: 0.0639 S22: 0.3314 S23: 0.3741 REMARK 3 S31: -0.1761 S32: -0.1754 S33: 0.3110 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6LXN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1300015183. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : TPS 05A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.975 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8766 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.930 REMARK 200 RESOLUTION RANGE LOW (A) : 28.730 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 9.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 45.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.93 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.04 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6LXL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MAGNESIUM ACETATE TETRAHYDRATE, REMARK 280 0.05 M MED MONOHYDRATE, PH 5.6, 20% V/V (+/-)-2-METHYL-2,4, REMARK 280 PENTANEDIOL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 82.67200 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 82.67200 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 82.67200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 112 REMARK 465 HIS A 113 REMARK 465 MET B 1 REMARK 465 SER B 103 REMARK 465 LYS B 104 REMARK 465 ALA B 105 REMARK 465 LEU B 106 REMARK 465 GLU B 107 REMARK 465 HIS B 108 REMARK 465 HIS B 109 REMARK 465 HIS B 110 REMARK 465 HIS B 111 REMARK 465 HIS B 112 REMARK 465 HIS B 113 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG B 48 OD1 ASP B 68 1.46 REMARK 500 NH1 ARG A 43 O LYS A 104 2.04 REMARK 500 NH1 ARG A 75 O ILE A 88 2.13 REMARK 500 NH1 ARG B 48 CG ASP B 68 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG D 18 O3' DG D 18 C3' -0.043 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT C 4 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DT C 6 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DC C 9 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 DC C 19 O4' - C1' - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 6 125.05 179.91 REMARK 500 HIS A 41 68.12 -116.04 REMARK 500 ARG A 43 -7.57 66.93 REMARK 500 VAL A 78 -32.66 -158.81 REMARK 500 LEU A 94 -41.83 -139.73 REMARK 500 LYS B 8 33.97 -83.32 REMARK 500 ARG B 43 18.87 42.55 REMARK 500 ASN B 53 -70.31 -53.68 REMARK 500 VAL B 78 -17.52 -141.46 REMARK 500 LEU B 94 -53.18 -120.99 REMARK 500 REMARK 500 REMARK: NULL DBREF 6LXN C 1 27 PDB 6LXN 6LXN 1 27 DBREF 6LXN D 1 27 PDB 6LXN 6LXN 1 27 DBREF1 6LXN A 2 105 UNP A0A376JR14_ECOLX DBREF2 6LXN A A0A376JR14 126 229 DBREF1 6LXN B 2 105 UNP A0A376JR14_ECOLX DBREF2 6LXN B A0A376JR14 126 229 SEQADV 6LXN MET A 1 UNP A0A376JR1 INITIATING METHIONINE SEQADV 6LXN LEU A 106 UNP A0A376JR1 EXPRESSION TAG SEQADV 6LXN GLU A 107 UNP A0A376JR1 EXPRESSION TAG SEQADV 6LXN HIS A 108 UNP A0A376JR1 EXPRESSION TAG SEQADV 6LXN HIS A 109 UNP A0A376JR1 EXPRESSION TAG SEQADV 6LXN HIS A 110 UNP A0A376JR1 EXPRESSION TAG SEQADV 6LXN HIS A 111 UNP A0A376JR1 EXPRESSION TAG SEQADV 6LXN HIS A 112 UNP A0A376JR1 EXPRESSION TAG SEQADV 6LXN HIS A 113 UNP A0A376JR1 EXPRESSION TAG SEQADV 6LXN MET B 1 UNP A0A376JR1 INITIATING METHIONINE SEQADV 6LXN LEU B 106 UNP A0A376JR1 EXPRESSION TAG SEQADV 6LXN GLU B 107 UNP A0A376JR1 EXPRESSION TAG SEQADV 6LXN HIS B 108 UNP A0A376JR1 EXPRESSION TAG SEQADV 6LXN HIS B 109 UNP A0A376JR1 EXPRESSION TAG SEQADV 6LXN HIS B 110 UNP A0A376JR1 EXPRESSION TAG SEQADV 6LXN HIS B 111 UNP A0A376JR1 EXPRESSION TAG SEQADV 6LXN HIS B 112 UNP A0A376JR1 EXPRESSION TAG SEQADV 6LXN HIS B 113 UNP A0A376JR1 EXPRESSION TAG SEQRES 1 C 27 DA DA DA DT DT DT DT DA DC DT DT DT DT SEQRES 2 C 27 DG DG DT DT DA DC DA DT DA DT DT DT DT SEQRES 3 C 27 DG SEQRES 1 D 27 DA DA DA DA DT DA DT DG DT DA DA DC DC SEQRES 2 D 27 DA DA DA DA DG DT DA DA DA DA DT DT DT SEQRES 3 D 27 DC SEQRES 1 A 113 MET ALA VAL ILE ALA PHE GLY LYS PHE LYS LEU ASN LEU SEQRES 2 A 113 GLY THR ARG GLU MET PHE ARG GLU ASP GLU PRO MET PRO SEQRES 3 A 113 LEU THR SER GLY GLU PHE ALA VAL LEU LYS ALA LEU VAL SEQRES 4 A 113 SER HIS PRO ARG GLU PRO LEU SER ARG ASP LYS LEU MET SEQRES 5 A 113 ASN LEU ALA ARG GLY ARG GLU TYR SER ALA MET GLU ARG SEQRES 6 A 113 SER ILE ASP VAL GLN ILE SER ARG LEU ARG ARG MET VAL SEQRES 7 A 113 GLU GLU ASP PRO ALA HIS PRO ARG TYR ILE GLN THR VAL SEQRES 8 A 113 TRP GLY LEU GLY TYR VAL PHE VAL PRO ASP GLY SER LYS SEQRES 9 A 113 ALA LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 113 MET ALA VAL ILE ALA PHE GLY LYS PHE LYS LEU ASN LEU SEQRES 2 B 113 GLY THR ARG GLU MET PHE ARG GLU ASP GLU PRO MET PRO SEQRES 3 B 113 LEU THR SER GLY GLU PHE ALA VAL LEU LYS ALA LEU VAL SEQRES 4 B 113 SER HIS PRO ARG GLU PRO LEU SER ARG ASP LYS LEU MET SEQRES 5 B 113 ASN LEU ALA ARG GLY ARG GLU TYR SER ALA MET GLU ARG SEQRES 6 B 113 SER ILE ASP VAL GLN ILE SER ARG LEU ARG ARG MET VAL SEQRES 7 B 113 GLU GLU ASP PRO ALA HIS PRO ARG TYR ILE GLN THR VAL SEQRES 8 B 113 TRP GLY LEU GLY TYR VAL PHE VAL PRO ASP GLY SER LYS SEQRES 9 B 113 ALA LEU GLU HIS HIS HIS HIS HIS HIS HET SO4 A 201 5 HETNAM SO4 SULFATE ION FORMUL 5 SO4 O4 S 2- HELIX 1 AA1 THR A 28 HIS A 41 1 14 HELIX 2 AA2 ARG A 48 GLY A 57 1 10 HELIX 3 AA3 ARG A 65 ARG A 76 1 12 HELIX 4 AA4 THR B 28 HIS B 41 1 14 HELIX 5 AA5 ARG B 48 GLY B 57 1 10 HELIX 6 AA6 ARG B 65 ARG B 76 1 12 SHEET 1 AA1 3 VAL A 3 PHE A 6 0 SHEET 2 AA1 3 PHE A 9 ASN A 12 -1 O LEU A 11 N ILE A 4 SHEET 3 AA1 3 GLU A 17 ARG A 20 -1 O GLU A 17 N ASN A 12 SHEET 1 AA2 3 LEU A 46 SER A 47 0 SHEET 2 AA2 3 GLY A 95 PHE A 98 -1 O TYR A 96 N LEU A 46 SHEET 3 AA2 3 ILE A 88 VAL A 91 -1 N VAL A 91 O GLY A 95 SHEET 1 AA3 4 VAL B 3 PHE B 6 0 SHEET 2 AA3 4 PHE B 9 ASN B 12 -1 O LEU B 11 N ILE B 4 SHEET 3 AA3 4 GLU B 17 ARG B 20 -1 O PHE B 19 N LYS B 10 SHEET 4 AA3 4 GLU B 23 MET B 25 -1 O GLU B 23 N ARG B 20 SHEET 1 AA4 3 LEU B 46 SER B 47 0 SHEET 2 AA4 3 GLY B 95 PHE B 98 -1 O TYR B 96 N LEU B 46 SHEET 3 AA4 3 ILE B 88 VAL B 91 -1 N VAL B 91 O GLY B 95 CRYST1 70.753 70.753 165.344 90.00 90.00 120.00 P 63 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014134 0.008160 0.000000 0.00000 SCALE2 0.000000 0.016320 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006048 0.00000