HEADER    LIGASE                                  13-FEB-20   6LY3              
TITLE     PYLRS C-TERMINUS DOMAIN MUTANT BOUND WITH 3-BENZOTHIENYL-L-ALANINE AND
TITLE    2 AMPNP                                                                
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: PYRROLYSINE--TRNA LIGASE;                                  
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: C-TERMINUS DOMAIN;                                         
COMPND   5 SYNONYM: PYRROLYSYL-TRNA SYNTHETASE,PYLRS;                           
COMPND   6 EC: 6.1.1.26;                                                        
COMPND   7 ENGINEERED: YES;                                                     
COMPND   8 MUTATION: YES                                                        
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: METHANOSARCINA MAZEI;                           
SOURCE   3 ORGANISM_TAXID: 2209;                                                
SOURCE   4 GENE: PYLS, DU43_20175, DU67_18120;                                  
SOURCE   5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   6 EXPRESSION_SYSTEM_TAXID: 562                                         
KEYWDS    TRNA SYNTHETASE, LIGASE                                               
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    J.H.WENG,M.D.TSAI,Y.S.WANG                                            
REVDAT   5   29-NOV-23 6LY3    1       REMARK                                   
REVDAT   4   15-NOV-23 6LY3    1       ATOM                                     
REVDAT   3   14-OCT-20 6LY3    1       ATOM                                     
REVDAT   2   29-JUL-20 6LY3    1       AUTHOR LINK                              
REVDAT   1   08-JUL-20 6LY3    0                                                
JRNL        AUTH   H.K.JIANG,Y.H.WANG,J.H.WENG,P.KURKUTE,C.L.LI,M.N.LEE,        
JRNL        AUTH 2 P.J.CHEN,H.W.TSENG,M.D.TSAI,Y.S.WANG                         
JRNL        TITL   PROBING THE ACTIVE SITE OF DEUBIQUITINASE USP30 WITH         
JRNL        TITL 2 NONCANONICAL TRYPTOPHAN ANALOGUES.                           
JRNL        REF    BIOCHEMISTRY                  V.  59  2205 2020              
JRNL        REFN                   ISSN 0006-2960                               
JRNL        PMID   32484330                                                     
JRNL        DOI    10.1021/ACS.BIOCHEM.0C00307                                  
REMARK   2                                                                      
REMARK   2 RESOLUTION.    1.90 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : PHENIX 1.11.1_2575                                   
REMARK   3   AUTHORS     : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN            
REMARK   3               : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,           
REMARK   3               : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,            
REMARK   3               : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,              
REMARK   3               : REETAL PAI,RANDY READ,JANE RICHARDSON,               
REMARK   3               : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,           
REMARK   3               : NICHOLAS SAUTER,JACOB SMITH,LAURENT                  
REMARK   3               : STORONI,TOM TERWILLIGER,PETER ZWART                  
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2           
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 38.46                          
REMARK   3   MIN(FOBS/SIGMA_FOBS)              : 1.376                          
REMARK   3   COMPLETENESS FOR RANGE        (%) : 99.8                           
REMARK   3   NUMBER OF REFLECTIONS             : 35848                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.181                           
REMARK   3   R VALUE            (WORKING SET) : 0.180                           
REMARK   3   FREE R VALUE                     : 0.202                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 5.540                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 1986                            
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT (IN BINS).                           
REMARK   3   BIN  RESOLUTION RANGE  COMPL.    NWORK NFREE   RWORK  RFREE        
REMARK   3     1 38.4630 -  4.5670    1.00     2476   147  0.1794 0.1980        
REMARK   3     2  4.5670 -  3.6259    1.00     2444   144  0.1521 0.1784        
REMARK   3     3  3.6259 -  3.1678    1.00     2449   138  0.1815 0.1864        
REMARK   3     4  3.1678 -  2.8782    1.00     2425   146  0.1885 0.1893        
REMARK   3     5  2.8782 -  2.6720    1.00     2436   139  0.1820 0.2232        
REMARK   3     6  2.6720 -  2.5145    1.00     2413   145  0.1860 0.2124        
REMARK   3     7  2.5145 -  2.3886    1.00     2406   142  0.1860 0.2309        
REMARK   3     8  2.3886 -  2.2846    1.00     2420   140  0.1818 0.2157        
REMARK   3     9  2.2846 -  2.1967    1.00     2394   143  0.1901 0.2140        
REMARK   3    10  2.1967 -  2.1209    1.00     2430   141  0.1861 0.2154        
REMARK   3    11  2.1209 -  2.0546    1.00     2418   141  0.1888 0.2084        
REMARK   3    12  2.0546 -  1.9959    1.00     2411   140  0.2003 0.2250        
REMARK   3    13  1.9959 -  1.9433    1.00     2410   142  0.2036 0.2351        
REMARK   3    14  1.9433 -  1.8960    0.97     2330   138  0.2478 0.3053        
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED        : FLAT BULK SOLVENT MODEL                       
REMARK   3   SOLVENT RADIUS     : 1.11                                          
REMARK   3   SHRINKAGE RADIUS   : 0.90                                          
REMARK   3   K_SOL              : NULL                                          
REMARK   3   B_SOL              : NULL                                          
REMARK   3                                                                      
REMARK   3  ERROR ESTIMATES.                                                    
REMARK   3   COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED)     : 0.218            
REMARK   3   PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.818           
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : 30.39                          
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 40.37                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : NULL                                                 
REMARK   3    B22 (A**2) : NULL                                                 
REMARK   3    B33 (A**2) : NULL                                                 
REMARK   3    B12 (A**2) : NULL                                                 
REMARK   3    B13 (A**2) : NULL                                                 
REMARK   3    B23 (A**2) : NULL                                                 
REMARK   3                                                                      
REMARK   3  TWINNING INFORMATION.                                               
REMARK   3   FRACTION: NULL                                                     
REMARK   3   OPERATOR: NULL                                                     
REMARK   3                                                                      
REMARK   3  DEVIATIONS FROM IDEAL VALUES.                                       
REMARK   3                 RMSD          COUNT                                  
REMARK   3   BOND      :  0.009           2191                                  
REMARK   3   ANGLE     :  1.042           2958                                  
REMARK   3   CHIRALITY :  0.059            320                                  
REMARK   3   PLANARITY :  0.006            379                                  
REMARK   3   DIHEDRAL  : 22.202            842                                  
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : NULL                                       
REMARK   3                                                                      
REMARK   3  NCS DETAILS                                                         
REMARK   3   NUMBER OF NCS GROUPS : NULL                                        
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 6LY3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-FEB-20.                  
REMARK 100 THE DEPOSITION ID IS D_1300015513.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 18-AUG-17                          
REMARK 200  TEMPERATURE           (KELVIN) : 110                                
REMARK 200  PH                             : 7.5                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : NSRRC                              
REMARK 200  BEAMLINE                       : TPS 05A                            
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 0.99984                            
REMARK 200  MONOCHROMATOR                  : NULL                               
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD                                
REMARK 200  DETECTOR MANUFACTURER          : RAYONIX MX300-HS                   
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : HKL-2000                           
REMARK 200  DATA SCALING SOFTWARE          : HKL-2000                           
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 35849                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 1.896                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 38.463                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : NULL                               
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 99.8                               
REMARK 200  DATA REDUNDANCY                : 11.30                              
REMARK 200  R MERGE                    (I) : NULL                               
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 36.4000                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 1.97                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : NULL                               
REMARK 200  DATA REDUNDANCY IN SHELL       : NULL                               
REMARK 200  R MERGE FOR SHELL          (I) : NULL                               
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : 2.500                              
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: PHENIX 1.11.1_2575                                    
REMARK 200 STARTING MODEL: 2ZCE                                                 
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 67.62                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.80                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES, 10% PEG 8000, 10%          
REMARK 280  ETHYLENE GLYCEROL, PH 7.5, VAPOR DIFFUSION, HANGING DROP,           
REMARK 280  TEMPERATURE 293K                                                    
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64                             
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -Y,X-Y,Z+1/3                                            
REMARK 290       3555   -X+Y,-X,Z+2/3                                           
REMARK 290       4555   -X,-Y,Z                                                 
REMARK 290       5555   Y,-X+Y,Z+1/3                                            
REMARK 290       6555   X-Y,X,Z+2/3                                             
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -0.500000 -0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.866025 -0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000       23.90033            
REMARK 290   SMTRY1   3 -0.500000  0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   3 -0.866025 -0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   3  0.000000  0.000000  1.000000       47.80067            
REMARK 290   SMTRY1   4 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   4  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   4  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   5  0.500000  0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   5 -0.866025  0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   5  0.000000  0.000000  1.000000       23.90033            
REMARK 290   SMTRY1   6  0.500000 -0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   6  0.866025  0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   6  0.000000  0.000000  1.000000       47.80067            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC                           
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC                    
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 TOTAL BURIED SURFACE AREA: 7130 ANGSTROM**2                          
REMARK 350 SURFACE AREA OF THE COMPLEX: 22130 ANGSTROM**2                       
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL                        
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 350   BIOMT1   2 -1.000000  0.000000  0.000000      -52.62600            
REMARK 350   BIOMT2   2  0.000000 -1.000000  0.000000      273.45272            
REMARK 350   BIOMT3   2  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     MET A   178                                                      
REMARK 465     HIS A   179                                                      
REMARK 465     HIS A   180                                                      
REMARK 465     HIS A   181                                                      
REMARK 465     HIS A   182                                                      
REMARK 465     HIS A   183                                                      
REMARK 465     HIS A   184                                                      
REMARK 465     ALA A   185                                                      
REMARK 465     SER A   186                                                      
REMARK 465     ALA A   187                                                      
REMARK 465     PRO A   188                                                      
REMARK 465     ASP A   379                                                      
REMARK 465     SER A   380                                                      
REMARK 465     CYS A   381                                                      
REMARK 465     MET A   382                                                      
REMARK 465     VAL A   383                                                      
REMARK 465     TYR A   384                                                      
REMARK 470                                                                      
REMARK 470 MISSING ATOM                                                         
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;           
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;          
REMARK 470 I=INSERTION CODE):                                                   
REMARK 470   M RES CSSEQI  ATOMS                                                
REMARK 470     ARG A 217    CG   CD   NE   CZ   NH1  NH2                        
REMARK 470     ASN A 280    CG   OD1  ND2                                       
REMARK 470     ASP A 281    CG   OD1  OD2                                       
REMARK 470     GLU A 283    CG   CD   OE1  OE2                                  
REMARK 470     LYS A 286    CG   CD   CE   NZ                                   
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    GLU A 207       45.01    -99.89                                   
REMARK 500    ASP A 292     -140.67   -118.32                                   
REMARK 500    ASP A 414       35.87   -141.36                                   
REMARK 500    ASN A 453       79.83   -105.99                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 620                                                                      
REMARK 620 METAL COORDINATION                                                   
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              MG A 503  MG                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 GLU A 396   OE1                                                    
REMARK 620 2 GLU A 396   OE2  46.5                                              
REMARK 620 3 SER A 399   OG   91.1  84.9                                        
REMARK 620 4 ANP A 501   O1B  90.5  99.9 174.6                                  
REMARK 620 5 ANP A 501   O2A  91.6 137.8  92.0  82.8                            
REMARK 620 6 HOH A 703   O   109.9  66.2 101.8  82.4 153.9                      
REMARK 620 7 HOH A 735   O   172.4 139.4  94.2  83.7  82.8  74.3                
REMARK 620 N                    1     2     3     4     5     6                 
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              MG A 502  MG                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 ANP A 501   O2G                                                    
REMARK 620 2 ANP A 501   O2B  85.4                                              
REMARK 620 3 HOH A 612   O    91.7  92.6                                        
REMARK 620 4 HOH A 632   O   174.2  89.3  90.8                                  
REMARK 620 5 HOH A 636   O    95.3 178.3  85.9  90.1                            
REMARK 620 6 HOH A 662   O    87.0  95.8 171.4  91.4  85.8                      
REMARK 620 N                    1     2     3     4     5                       
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue ANP A 501                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 502                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC3                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 503                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC4                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue 4OG A 504                 
DBREF1 6LY3 A  185   454  UNP                  A0A0F8JXW8_METMZ                 
DBREF2 6LY3 A     A0A0F8JXW8                        185         454             
SEQADV 6LY3 MET A  178  UNP  A0A0F8JXW           EXPRESSION TAG                 
SEQADV 6LY3 HIS A  179  UNP  A0A0F8JXW           EXPRESSION TAG                 
SEQADV 6LY3 HIS A  180  UNP  A0A0F8JXW           EXPRESSION TAG                 
SEQADV 6LY3 HIS A  181  UNP  A0A0F8JXW           EXPRESSION TAG                 
SEQADV 6LY3 HIS A  182  UNP  A0A0F8JXW           EXPRESSION TAG                 
SEQADV 6LY3 HIS A  183  UNP  A0A0F8JXW           EXPRESSION TAG                 
SEQADV 6LY3 HIS A  184  UNP  A0A0F8JXW           EXPRESSION TAG                 
SEQADV 6LY3 GLY A  346  UNP  A0A0F8JXW ASN   346 ENGINEERED MUTATION            
SEQADV 6LY3 GLN A  348  UNP  A0A0F8JXW CYS   348 ENGINEERED MUTATION            
SEQADV 6LY3 GLY A  401  UNP  A0A0F8JXW VAL   401 ENGINEERED MUTATION            
SEQRES   1 A  277  MET HIS HIS HIS HIS HIS HIS ALA SER ALA PRO ALA LEU          
SEQRES   2 A  277  THR LYS SER GLN THR ASP ARG LEU GLU VAL LEU LEU ASN          
SEQRES   3 A  277  PRO LYS ASP GLU ILE SER LEU ASN SER GLY LYS PRO PHE          
SEQRES   4 A  277  ARG GLU LEU GLU SER GLU LEU LEU SER ARG ARG LYS LYS          
SEQRES   5 A  277  ASP LEU GLN GLN ILE TYR ALA GLU GLU ARG GLU ASN TYR          
SEQRES   6 A  277  LEU GLY LYS LEU GLU ARG GLU ILE THR ARG PHE PHE VAL          
SEQRES   7 A  277  ASP ARG GLY PHE LEU GLU ILE LYS SER PRO ILE LEU ILE          
SEQRES   8 A  277  PRO LEU GLU TYR ILE GLU ARG MET GLY ILE ASP ASN ASP          
SEQRES   9 A  277  THR GLU LEU SER LYS GLN ILE PHE ARG VAL ASP LYS ASN          
SEQRES  10 A  277  PHE CYS LEU ARG PRO MET LEU ALA PRO ASN LEU TYR ASN          
SEQRES  11 A  277  TYR LEU ARG LYS LEU ASP ARG ALA LEU PRO ASP PRO ILE          
SEQRES  12 A  277  LYS ILE PHE GLU ILE GLY PRO CYS TYR ARG LYS GLU SER          
SEQRES  13 A  277  ASP GLY LYS GLU HIS LEU GLU GLU PHE THR MET LEU GLY          
SEQRES  14 A  277  PHE GLN GLN MET GLY SER GLY CYS THR ARG GLU ASN LEU          
SEQRES  15 A  277  GLU SER ILE ILE THR ASP PHE LEU ASN HIS LEU GLY ILE          
SEQRES  16 A  277  ASP PHE LYS ILE VAL GLY ASP SER CYS MET VAL TYR GLY          
SEQRES  17 A  277  ASP THR LEU ASP VAL MET HIS GLY ASP LEU GLU LEU SER          
SEQRES  18 A  277  SER ALA GLY VAL GLY PRO ILE PRO LEU ASP ARG GLU TRP          
SEQRES  19 A  277  GLY ILE ASP LYS PRO TRP ILE GLY ALA GLY PHE GLY LEU          
SEQRES  20 A  277  GLU ARG LEU LEU LYS VAL LYS HIS ASP PHE LYS ASN ILE          
SEQRES  21 A  277  LYS ARG ALA ALA ARG SER GLU SER TYR TYR ASN GLY ILE          
SEQRES  22 A  277  SER THR ASN LEU                                              
HET    ANP  A 501      48                                                       
HET     MG  A 502       1                                                       
HET     MG  A 503       1                                                       
HET    4OG  A 504      15                                                       
HETNAM     ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER                      
HETNAM      MG MAGNESIUM ION                                                    
HETNAM     4OG 3-(1-BENZOTHIOPHEN-3-YL)-L-ALANINE                               
FORMUL   2  ANP    C10 H17 N6 O12 P3                                            
FORMUL   3   MG    2(MG 2+)                                                     
FORMUL   5  4OG    C11 H11 N O2 S                                               
FORMUL   6  HOH   *169(H2 O)                                                    
HELIX    1 AA1 THR A  191  LEU A  202  1                                  12    
HELIX    2 AA2 PRO A  215  GLU A  238  1                                  24    
HELIX    3 AA3 ASN A  241  ARG A  257  1                                  17    
HELIX    4 AA4 LEU A  270  MET A  276  1                                   7    
HELIX    5 AA5 THR A  282  ILE A  288  5                                   7    
HELIX    6 AA6 LEU A  301  ASP A  313  1                                  13    
HELIX    7 AA7 THR A  355  GLY A  371  1                                  17    
HELIX    8 AA8 ILE A  405  GLY A  412  5                                   8    
HELIX    9 AA9 LEU A  424  ASP A  433  1                                  10    
HELIX   10 AB1 ASN A  436  ALA A  441  5                                   6    
SHEET    1 AA1 7 LEU A 260  ILE A 262  0                                        
SHEET    2 AA1 7 ILE A 320  TYR A 329  1  O  LYS A 321   N  LEU A 260           
SHEET    3 AA1 7 GLU A 341  MET A 350 -1  O  GLY A 346   N  GLU A 324           
SHEET    4 AA1 7 TRP A 417  GLY A 423 -1  O  ILE A 418   N  GLN A 349           
SHEET    5 AA1 7 LEU A 395  GLY A 403 -1  N  GLY A 403   O  TRP A 417           
SHEET    6 AA1 7 ASP A 386  HIS A 392 -1  N  LEU A 388   O  ALA A 400           
SHEET    7 AA1 7 LYS A 375  VAL A 377 -1  N  LYS A 375   O  MET A 391           
SHEET    1 AA2 2 LEU A 267  PRO A 269  0                                        
SHEET    2 AA2 2 PHE A 295  LEU A 297 -1  O  CYS A 296   N  ILE A 268           
SHEET    1 AA3 2 TYR A 446  TYR A 447  0                                        
SHEET    2 AA3 2 ILE A 450  SER A 451 -1  O  ILE A 450   N  TYR A 447           
LINK         OE1 GLU A 396                MG    MG A 503     1555   1555  2.50  
LINK         OE2 GLU A 396                MG    MG A 503     1555   1555  2.97  
LINK         OG  SER A 399                MG    MG A 503     1555   1555  2.12  
LINK         O2G ANP A 501                MG    MG A 502     1555   1555  1.86  
LINK         O2B ANP A 501                MG    MG A 502     1555   1555  1.97  
LINK         O1B ANP A 501                MG    MG A 503     1555   1555  2.38  
LINK         O2A ANP A 501                MG    MG A 503     1555   1555  2.34  
LINK        MG    MG A 502                 O   HOH A 612     1555   1555  2.16  
LINK        MG    MG A 502                 O   HOH A 632     1555   1555  2.17  
LINK        MG    MG A 502                 O   HOH A 636     1555   1555  2.19  
LINK        MG    MG A 502                 O   HOH A 662     1555   1555  2.15  
LINK        MG    MG A 503                 O   HOH A 703     1555   1555  2.27  
LINK        MG    MG A 503                 O   HOH A 735     1555   1555  2.34  
CISPEP   1 ASP A  318    PRO A  319          0        -2.90                     
CISPEP   2 GLY A  403    PRO A  404          0         8.29                     
SITE     1 AC1 23 ARG A 330  GLU A 332  HIS A 338  LEU A 339                    
SITE     2 AC1 23 PHE A 342  MET A 344  GLU A 396  LEU A 397                    
SITE     3 AC1 23 SER A 398  SER A 399  GLY A 423  ARG A 426                    
SITE     4 AC1 23  MG A 502   MG A 503  HOH A 612  HOH A 628                    
SITE     5 AC1 23 HOH A 632  HOH A 636  HOH A 662  HOH A 694                    
SITE     6 AC1 23 HOH A 701  HOH A 703  HOH A 735                               
SITE     1 AC2  5 ANP A 501  HOH A 612  HOH A 632  HOH A 636                    
SITE     2 AC2  5 HOH A 662                                                     
SITE     1 AC3  5 GLU A 396  SER A 399  ANP A 501  HOH A 703                    
SITE     2 AC3  5 HOH A 735                                                     
SITE     1 AC4  9 MET A 300  LEU A 301  ALA A 302  MET A 344                    
SITE     2 AC4  9 SER A 399  GLY A 419  ALA A 420  GLY A 421                    
SITE     3 AC4  9 HOH A 628                                                     
CRYST1  105.252  105.252   71.701  90.00  90.00 120.00 P 64          6          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.009501  0.005485  0.000000        0.00000                         
SCALE2      0.000000  0.010971  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.013947        0.00000