HEADER TRANSFERASE 14-FEB-20 6LYI TITLE CRYSTAL STRUCTURE OF A N-METHYLTRANSFERASE CKTBS FROM CAMELLIA TITLE 2 ASSAMICA VAR. KUCHA COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-METHYLTRANSFERASE CKTBS; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAMELLIA SINENSIS VAR. ASSAMICA; SOURCE 3 ORGANISM_TAXID: 261999; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CKTBS, N-METHYLTRANSFERASE, TEA, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.WANG,Z.M.ZHANG REVDAT 3 29-NOV-23 6LYI 1 REMARK REVDAT 2 01-APR-20 6LYI 1 JRNL REVDAT 1 04-MAR-20 6LYI 0 JRNL AUTH Y.H.ZHANG,Y.F.LI,Y.WANG,L.TAN,Z.Q.CAO,C.XIE,G.XIE,H.B.GONG, JRNL AUTH 2 W.Y.SUN,S.H.OUYANG,W.J.DUAN,X.LU,K.DING,H.KURIHARA,D.HU, JRNL AUTH 3 Z.M.ZHANG,I.ABE,R.R.HE JRNL TITL IDENTIFICATION AND CHARACTERIZATION OF N9-METHYLTRANSFERASE JRNL TITL 2 INVOLVED IN CONVERTING CAFFEINE INTO NON-STIMULATORY JRNL TITL 3 THEACRINE IN TEA. JRNL REF NAT COMMUN V. 11 1473 2020 JRNL REFN ESSN 2041-1723 JRNL PMID 32193380 JRNL DOI 10.1038/S41467-020-15324-7 REMARK 2 REMARK 2 RESOLUTION. 2.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 62522 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.870 REMARK 3 FREE R VALUE TEST SET COUNT : 3668 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.3860 - 7.3679 0.99 2252 131 0.1489 0.1928 REMARK 3 2 7.3679 - 5.8515 1.00 2250 145 0.1706 0.1883 REMARK 3 3 5.8515 - 5.1129 1.00 2269 144 0.1665 0.1877 REMARK 3 4 5.1129 - 4.6458 1.00 2285 130 0.1328 0.1559 REMARK 3 5 4.6458 - 4.3131 1.00 2264 152 0.1426 0.1848 REMARK 3 6 4.3131 - 4.0589 1.00 2263 145 0.1506 0.1765 REMARK 3 7 4.0589 - 3.8557 1.00 2249 140 0.1693 0.2251 REMARK 3 8 3.8557 - 3.6880 1.00 2246 142 0.1760 0.2240 REMARK 3 9 3.6880 - 3.5460 1.00 2262 137 0.1783 0.1976 REMARK 3 10 3.5460 - 3.4237 1.00 2268 146 0.1946 0.2290 REMARK 3 11 3.4237 - 3.3167 1.00 2276 140 0.2119 0.2885 REMARK 3 12 3.3167 - 3.2219 1.00 2256 140 0.2201 0.2788 REMARK 3 13 3.2219 - 3.1371 1.00 2254 138 0.2126 0.2870 REMARK 3 14 3.1371 - 3.0606 1.00 2306 135 0.2158 0.2233 REMARK 3 15 3.0606 - 2.9910 1.00 2287 145 0.2113 0.2997 REMARK 3 16 2.9910 - 2.9274 1.00 2221 136 0.2359 0.2890 REMARK 3 17 2.9274 - 2.8688 1.00 2282 142 0.2328 0.2859 REMARK 3 18 2.8688 - 2.8147 1.00 2233 146 0.2267 0.3232 REMARK 3 19 2.8147 - 2.7644 1.00 2303 139 0.2327 0.2970 REMARK 3 20 2.7644 - 2.7176 1.00 2195 140 0.2435 0.2673 REMARK 3 21 2.7176 - 2.6737 1.00 2253 140 0.2369 0.3016 REMARK 3 22 2.6737 - 2.6326 1.00 2317 138 0.2512 0.3190 REMARK 3 23 2.6326 - 2.5939 1.00 2229 146 0.2766 0.3256 REMARK 3 24 2.5939 - 2.5574 1.00 2271 141 0.2738 0.3299 REMARK 3 25 2.5574 - 2.5228 1.00 2279 142 0.2660 0.2975 REMARK 3 26 2.5228 - 2.4900 1.00 2284 148 0.2939 0.3188 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.490 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 53.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 5141 REMARK 3 ANGLE : 1.106 6974 REMARK 3 CHIRALITY : 0.040 804 REMARK 3 PLANARITY : 0.005 898 REMARK 3 DIHEDRAL : 15.027 1836 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 28 THROUGH 140 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.7755 -66.1284 0.4097 REMARK 3 T TENSOR REMARK 3 T11: 0.5539 T22: 0.6957 REMARK 3 T33: 0.5997 T12: 0.0605 REMARK 3 T13: -0.1084 T23: 0.0141 REMARK 3 L TENSOR REMARK 3 L11: 8.2165 L22: 3.1220 REMARK 3 L33: 2.7477 L12: -2.8946 REMARK 3 L13: -0.8583 L23: -0.5442 REMARK 3 S TENSOR REMARK 3 S11: -0.2647 S12: -1.5325 S13: -0.3017 REMARK 3 S21: 0.7524 S22: 0.5173 S23: 0.0455 REMARK 3 S31: 0.1423 S32: 0.1889 S33: -0.2944 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 141 THROUGH 369 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.2904 -51.8821 5.9100 REMARK 3 T TENSOR REMARK 3 T11: 0.3707 T22: 0.4921 REMARK 3 T33: 0.3131 T12: -0.0037 REMARK 3 T13: -0.0162 T23: 0.0612 REMARK 3 L TENSOR REMARK 3 L11: 2.6659 L22: 3.1246 REMARK 3 L33: 0.9660 L12: -1.2836 REMARK 3 L13: -0.4721 L23: 0.0985 REMARK 3 S TENSOR REMARK 3 S11: -0.0665 S12: -0.3721 S13: 0.0080 REMARK 3 S21: 0.5565 S22: 0.0616 S23: 0.0816 REMARK 3 S31: -0.0285 S32: -0.0117 S33: -0.0037 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 29 THROUGH 51 ) REMARK 3 ORIGIN FOR THE GROUP (A): -54.3347 -25.3441 -24.0105 REMARK 3 T TENSOR REMARK 3 T11: 0.7099 T22: 0.3702 REMARK 3 T33: 0.3618 T12: 0.1351 REMARK 3 T13: -0.1091 T23: -0.0181 REMARK 3 L TENSOR REMARK 3 L11: 5.0355 L22: 4.4904 REMARK 3 L33: 4.1056 L12: 0.3436 REMARK 3 L13: -3.9050 L23: -1.1972 REMARK 3 S TENSOR REMARK 3 S11: 0.3290 S12: 1.3750 S13: 0.1992 REMARK 3 S21: -0.6266 S22: -0.2264 S23: -0.0932 REMARK 3 S31: 0.0671 S32: -0.2470 S33: -0.0882 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 52 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): -60.5837 -20.8738 -12.9597 REMARK 3 T TENSOR REMARK 3 T11: 0.5105 T22: 0.3009 REMARK 3 T33: 0.4532 T12: 0.0424 REMARK 3 T13: -0.0322 T23: -0.0027 REMARK 3 L TENSOR REMARK 3 L11: 5.5724 L22: 3.5474 REMARK 3 L33: 3.1948 L12: -0.6744 REMARK 3 L13: -0.1222 L23: -0.7253 REMARK 3 S TENSOR REMARK 3 S11: 0.1384 S12: 0.1865 S13: 0.2837 REMARK 3 S21: -0.1974 S22: -0.0173 S23: 0.0327 REMARK 3 S31: -0.5186 S32: 0.1340 S33: -0.0746 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 118 THROUGH 254 ) REMARK 3 ORIGIN FOR THE GROUP (A): -41.3384 -34.8801 -13.7121 REMARK 3 T TENSOR REMARK 3 T11: 0.3959 T22: 0.3424 REMARK 3 T33: 0.2947 T12: 0.0046 REMARK 3 T13: 0.0116 T23: 0.0096 REMARK 3 L TENSOR REMARK 3 L11: 4.0340 L22: 2.8349 REMARK 3 L33: 1.2284 L12: -1.5750 REMARK 3 L13: 0.0721 L23: -0.2647 REMARK 3 S TENSOR REMARK 3 S11: 0.1289 S12: 0.1945 S13: -0.0537 REMARK 3 S21: -0.4291 S22: -0.1792 S23: -0.0932 REMARK 3 S31: -0.0939 S32: 0.1769 S33: 0.0879 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 255 THROUGH 370 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.5873 -30.3264 -19.7312 REMARK 3 T TENSOR REMARK 3 T11: 0.6015 T22: 0.4163 REMARK 3 T33: 0.4646 T12: 0.0085 REMARK 3 T13: 0.0498 T23: 0.0549 REMARK 3 L TENSOR REMARK 3 L11: 3.5122 L22: 2.6967 REMARK 3 L33: 2.0161 L12: -0.8674 REMARK 3 L13: 0.2547 L23: -0.6076 REMARK 3 S TENSOR REMARK 3 S11: 0.1135 S12: 0.4685 S13: 0.3983 REMARK 3 S21: -0.4036 S22: -0.3072 S23: -0.4501 REMARK 3 S31: -0.3728 S32: 0.3611 S33: 0.1670 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6LYI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1300015698. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9798 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62522 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.490 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 19.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.53 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 2.00000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2EFJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES (PH 6.0), 0.2 M LI2SO4, 20% REMARK 280 PEG 4000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.78667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 25.39333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 38.09000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 12.69667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 63.48333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -12.69667 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 LEU A 3 REMARK 465 ALA A 4 REMARK 465 THR A 5 REMARK 465 MET A 6 REMARK 465 GLY A 7 REMARK 465 LYS A 8 REMARK 465 VAL A 9 REMARK 465 ASN A 10 REMARK 465 GLU A 11 REMARK 465 VAL A 12 REMARK 465 LEU A 13 REMARK 465 PHE A 14 REMARK 465 MET A 15 REMARK 465 ASN A 16 REMARK 465 GLY A 17 REMARK 465 GLY A 18 REMARK 465 GLU A 19 REMARK 465 GLY A 20 REMARK 465 GLU A 21 REMARK 465 ILE A 22 REMARK 465 SER A 23 REMARK 465 TYR A 24 REMARK 465 ALA A 25 REMARK 465 GLN A 26 REMARK 465 ASN A 27 REMARK 465 ALA A 69 REMARK 465 GLY A 70 REMARK 465 GLY A 107 REMARK 465 ASN A 108 REMARK 465 ASP A 109 REMARK 465 PHE A 110 REMARK 465 ASN A 111 REMARK 465 THR A 112 REMARK 465 LEU A 113 REMARK 465 PHE A 114 REMARK 465 LYS A 115 REMARK 465 GLY A 116 REMARK 465 LEU A 117 REMARK 465 SER A 118 REMARK 465 SER A 119 REMARK 465 GLU A 120 REMARK 465 VAL A 121 REMARK 465 VAL A 122 REMARK 465 GLY A 123 REMARK 465 ASN A 124 REMARK 465 GLY A 370 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 LEU B 3 REMARK 465 ALA B 4 REMARK 465 THR B 5 REMARK 465 MET B 6 REMARK 465 GLY B 7 REMARK 465 LYS B 8 REMARK 465 VAL B 9 REMARK 465 ASN B 10 REMARK 465 GLU B 11 REMARK 465 VAL B 12 REMARK 465 LEU B 13 REMARK 465 PHE B 14 REMARK 465 MET B 15 REMARK 465 ASN B 16 REMARK 465 GLY B 17 REMARK 465 GLY B 18 REMARK 465 GLU B 19 REMARK 465 GLY B 20 REMARK 465 GLU B 21 REMARK 465 ILE B 22 REMARK 465 SER B 23 REMARK 465 TYR B 24 REMARK 465 ALA B 25 REMARK 465 GLN B 26 REMARK 465 ASN B 27 REMARK 465 SER B 28 REMARK 465 LEU B 105 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 33 CG CD CE NZ REMARK 470 PHE A 50 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 52 CG CD CE NZ REMARK 470 HIS A 55 CG ND1 CD2 CE1 NE2 REMARK 470 LEU A 56 CG CD1 CD2 REMARK 470 PHE A 74 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 85 CG CD OE1 OE2 REMARK 470 LYS A 86 CG CD CE NZ REMARK 470 LYS A 87 CG CD CE NZ REMARK 470 GLU A 90 CG CD OE1 OE2 REMARK 470 LEU A 91 CG CD1 CD2 REMARK 470 PHE A 106 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 125 CG CD CE NZ REMARK 470 GLU A 127 CG CD OE1 OE2 REMARK 470 ARG A 172 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 173 CG CD OE1 OE2 REMARK 470 LEU A 175 CG CD1 CD2 REMARK 470 LYS A 179 CG CD CE NZ REMARK 470 GLU A 302 CG CD OE1 OE2 REMARK 470 GLN A 304 CG CD OE1 NE2 REMARK 470 ASN A 306 CG OD1 ND2 REMARK 470 ASP A 307 CG OD1 OD2 REMARK 470 LYS A 308 CG CD CE NZ REMARK 470 TRP A 309 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 309 CZ3 CH2 REMARK 470 LYS A 314 CG CD CE NZ REMARK 470 LYS A 317 CG CD CE NZ REMARK 470 VAL A 348 CG1 CG2 REMARK 470 GLU A 352 CG CD OE1 OE2 REMARK 470 LYS A 357 CG CD CE NZ REMARK 470 PHE B 106 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASN B 108 CG OD1 ND2 REMARK 470 ASN B 111 CG OD1 ND2 REMARK 470 THR B 112 OG1 CG2 REMARK 470 LYS B 115 CG CD CE NZ REMARK 470 LYS B 125 CG CD CE NZ REMARK 470 GLN B 304 CG CD OE1 NE2 REMARK 470 ASN B 306 CG OD1 ND2 REMARK 470 ASP B 307 CG OD1 OD2 REMARK 470 LYS B 308 CG CD CE NZ REMARK 470 VAL B 310 CG1 CG2 REMARK 470 LYS B 314 CG CD CE NZ REMARK 470 LYS B 317 CG CD CE NZ REMARK 470 GLU B 334 CG CD OE1 OE2 REMARK 470 VAL B 348 CG1 CG2 REMARK 470 GLU B 352 CG CD OE1 OE2 REMARK 470 LYS B 357 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O MET A 37 O HOH A 401 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 262 C - N - CA ANGL. DEV. = 16.2 DEGREES REMARK 500 PRO B 71 C - N - CA ANGL. DEV. = 17.0 DEGREES REMARK 500 PRO B 71 C - N - CD ANGL. DEV. = -15.4 DEGREES REMARK 500 LYS B 262 C - N - CA ANGL. DEV. = 15.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 171 -152.05 -81.01 REMARK 500 ARG A 172 104.93 -172.16 REMARK 500 GLU A 173 -119.26 33.25 REMARK 500 LYS A 262 -74.76 146.18 REMARK 500 GLU A 302 93.88 -64.61 REMARK 500 GLN A 304 31.40 -80.86 REMARK 500 SER A 349 -61.33 -91.78 REMARK 500 ALA B 69 -63.32 -122.40 REMARK 500 PRO B 71 -64.95 8.14 REMARK 500 ASN B 72 -8.25 -58.47 REMARK 500 ASN B 178 76.90 -104.99 REMARK 500 LYS B 179 -87.46 -56.25 REMARK 500 ASN B 218 -1.02 73.58 REMARK 500 GLU B 260 -10.33 65.75 REMARK 500 LYS B 262 -61.35 108.00 REMARK 500 GLU B 302 87.26 -57.61 REMARK 500 REMARK 500 REMARK: NULL DBREF 6LYI A 0 370 PDB 6LYI 6LYI 0 370 DBREF 6LYI B 0 370 PDB 6LYI 6LYI 0 370 SEQRES 1 A 371 SER MET GLU LEU ALA THR MET GLY LYS VAL ASN GLU VAL SEQRES 2 A 371 LEU PHE MET ASN GLY GLY GLU GLY GLU ILE SER TYR ALA SEQRES 3 A 371 GLN ASN SER SER PHE THR GLU LYS VAL ALA SER MET ALA SEQRES 4 A 371 MET PRO ALA LEU GLU ASN ALA VAL GLU THR LEU PHE SER SEQRES 5 A 371 LYS ASP PHE HIS LEU LEU PRO ALA LEU ASN ALA ALA ASP SEQRES 6 A 371 LEU GLY CYS ALA ALA GLY PRO ASN THR PHE ALA VAL ILE SEQRES 7 A 371 SER MET ILE LYS ARG MET MET GLU LYS LYS CYS ARG GLU SEQRES 8 A 371 LEU TYR CYS GLN THR PRO GLU LEU GLN VAL TYR LEU ASN SEQRES 9 A 371 ASP LEU PHE GLY ASN ASP PHE ASN THR LEU PHE LYS GLY SEQRES 10 A 371 LEU SER SER GLU VAL VAL GLY ASN LYS CYS GLU GLU VAL SEQRES 11 A 371 SER CYS TYR VAL MET GLY VAL PRO GLY SER PHE HIS GLY SEQRES 12 A 371 ARG LEU PHE PRO ARG ASN SER LEU HIS LEU VAL HIS SER SEQRES 13 A 371 SER TYR SER VAL HIS TRP LEU THR GLN ALA PRO LYS GLY SEQRES 14 A 371 LEU THR SER ARG GLU GLY LEU ALA LEU ASN LYS GLY LYS SEQRES 15 A 371 ILE TYR ILE SER LYS THR SER PRO PRO ALA VAL LYS GLU SEQRES 16 A 371 ALA TYR LEU SER GLN PHE HIS GLU ASP PHE THR MET PHE SEQRES 17 A 371 LEU ASN ALA ARG SER GLN GLU VAL VAL PRO ASN GLY CYS SEQRES 18 A 371 MET VAL LEU ILE LEU HIS GLY ARG GLN SER SER ASP PRO SEQRES 19 A 371 SER GLU MET GLU SER CYS PHE THR TRP GLU LEU LEU ALA SEQRES 20 A 371 ILE ALA ILE ALA GLU LEU VAL SER GLN GLY LEU ILE ASP SEQRES 21 A 371 GLU ASP LYS LEU ASP THR PHE ASN VAL PRO SER TYR PHE SEQRES 22 A 371 PRO SER LEU GLU GLU VAL LYS ASP ILE VAL GLU ARG ASP SEQRES 23 A 371 GLY SER PHE THR ILE ASP HIS LEU GLU GLY PHE GLU LEU SEQRES 24 A 371 ASP SER LEU GLU MET GLN GLU ASN ASP LYS TRP VAL ARG SEQRES 25 A 371 GLY ASP LYS PHE ALA LYS MET VAL ARG ALA PHE THR GLU SEQRES 26 A 371 PRO ILE ILE SER ASN GLN PHE GLY HIS GLU ILE MET ASP SEQRES 27 A 371 LYS LEU TYR ASP LYS PHE THR HIS ILE VAL VAL SER ASP SEQRES 28 A 371 LEU GLU ALA GLU LEU PRO LYS THR THR SER ILE ILE LEU SEQRES 29 A 371 VAL LEU SER LYS ILE VAL GLY SEQRES 1 B 371 SER MET GLU LEU ALA THR MET GLY LYS VAL ASN GLU VAL SEQRES 2 B 371 LEU PHE MET ASN GLY GLY GLU GLY GLU ILE SER TYR ALA SEQRES 3 B 371 GLN ASN SER SER PHE THR GLU LYS VAL ALA SER MET ALA SEQRES 4 B 371 MET PRO ALA LEU GLU ASN ALA VAL GLU THR LEU PHE SER SEQRES 5 B 371 LYS ASP PHE HIS LEU LEU PRO ALA LEU ASN ALA ALA ASP SEQRES 6 B 371 LEU GLY CYS ALA ALA GLY PRO ASN THR PHE ALA VAL ILE SEQRES 7 B 371 SER MET ILE LYS ARG MET MET GLU LYS LYS CYS ARG GLU SEQRES 8 B 371 LEU TYR CYS GLN THR PRO GLU LEU GLN VAL TYR LEU ASN SEQRES 9 B 371 ASP LEU PHE GLY ASN ASP PHE ASN THR LEU PHE LYS GLY SEQRES 10 B 371 LEU SER SER GLU VAL VAL GLY ASN LYS CYS GLU GLU VAL SEQRES 11 B 371 SER CYS TYR VAL MET GLY VAL PRO GLY SER PHE HIS GLY SEQRES 12 B 371 ARG LEU PHE PRO ARG ASN SER LEU HIS LEU VAL HIS SER SEQRES 13 B 371 SER TYR SER VAL HIS TRP LEU THR GLN ALA PRO LYS GLY SEQRES 14 B 371 LEU THR SER ARG GLU GLY LEU ALA LEU ASN LYS GLY LYS SEQRES 15 B 371 ILE TYR ILE SER LYS THR SER PRO PRO ALA VAL LYS GLU SEQRES 16 B 371 ALA TYR LEU SER GLN PHE HIS GLU ASP PHE THR MET PHE SEQRES 17 B 371 LEU ASN ALA ARG SER GLN GLU VAL VAL PRO ASN GLY CYS SEQRES 18 B 371 MET VAL LEU ILE LEU HIS GLY ARG GLN SER SER ASP PRO SEQRES 19 B 371 SER GLU MET GLU SER CYS PHE THR TRP GLU LEU LEU ALA SEQRES 20 B 371 ILE ALA ILE ALA GLU LEU VAL SER GLN GLY LEU ILE ASP SEQRES 21 B 371 GLU ASP LYS LEU ASP THR PHE ASN VAL PRO SER TYR PHE SEQRES 22 B 371 PRO SER LEU GLU GLU VAL LYS ASP ILE VAL GLU ARG ASP SEQRES 23 B 371 GLY SER PHE THR ILE ASP HIS LEU GLU GLY PHE GLU LEU SEQRES 24 B 371 ASP SER LEU GLU MET GLN GLU ASN ASP LYS TRP VAL ARG SEQRES 25 B 371 GLY ASP LYS PHE ALA LYS MET VAL ARG ALA PHE THR GLU SEQRES 26 B 371 PRO ILE ILE SER ASN GLN PHE GLY HIS GLU ILE MET ASP SEQRES 27 B 371 LYS LEU TYR ASP LYS PHE THR HIS ILE VAL VAL SER ASP SEQRES 28 B 371 LEU GLU ALA GLU LEU PRO LYS THR THR SER ILE ILE LEU SEQRES 29 B 371 VAL LEU SER LYS ILE VAL GLY FORMUL 3 HOH *90(H2 O) HELIX 1 AA1 SER A 28 GLU A 47 1 20 HELIX 2 AA2 GLU A 47 LYS A 52 1 6 HELIX 3 AA3 ASN A 72 TYR A 92 1 21 HELIX 4 AA4 PRO A 189 GLU A 214 1 26 HELIX 5 AA5 GLU A 235 GLN A 255 1 21 HELIX 6 AA6 ASP A 259 ASP A 264 1 6 HELIX 7 AA7 SER A 274 ASP A 285 1 12 HELIX 8 AA8 ASP A 307 GLY A 332 1 26 HELIX 9 AA9 ILE A 335 SER A 349 1 15 HELIX 10 AB1 PHE B 30 LYS B 52 1 23 HELIX 11 AB2 ASP B 53 LEU B 57 5 5 HELIX 12 AB3 PRO B 71 ARG B 89 1 19 HELIX 13 AB4 PHE B 110 SER B 118 1 9 HELIX 14 AB5 SER B 118 GLY B 123 1 6 HELIX 15 AB6 PRO B 166 THR B 170 5 5 HELIX 16 AB7 GLU B 173 LEU B 177 5 5 HELIX 17 AB8 PRO B 189 GLU B 214 1 26 HELIX 18 AB9 GLU B 235 GLN B 255 1 21 HELIX 19 AC1 SER B 274 ASP B 285 1 12 HELIX 20 AC2 ASP B 307 GLY B 332 1 26 HELIX 21 AC3 ILE B 335 SER B 349 1 15 SHEET 1 AA1 7 CYS A 131 GLY A 135 0 SHEET 2 AA1 7 GLU A 97 ASN A 103 1 N LEU A 102 O MET A 134 SHEET 3 AA1 7 ALA A 59 LEU A 65 1 N ASP A 64 O TYR A 101 SHEET 4 AA1 7 LEU A 150 SER A 156 1 O HIS A 154 N ALA A 63 SHEET 5 AA1 7 VAL A 215 HIS A 226 1 O ILE A 224 N SER A 155 SHEET 6 AA1 7 THR A 358 LYS A 367 -1 O ILE A 361 N LEU A 225 SHEET 7 AA1 7 PHE A 288 LEU A 298 -1 N GLU A 294 O ILE A 362 SHEET 1 AA2 7 CYS B 131 PRO B 137 0 SHEET 2 AA2 7 GLU B 97 ASP B 104 1 N VAL B 100 O MET B 134 SHEET 3 AA2 7 ALA B 59 ASP B 64 1 N ALA B 62 O TYR B 101 SHEET 4 AA2 7 LEU B 150 SER B 156 1 O HIS B 154 N ALA B 63 SHEET 5 AA2 7 VAL B 215 GLY B 227 1 O VAL B 222 N VAL B 153 SHEET 6 AA2 7 THR B 358 LYS B 367 -1 O LEU B 363 N LEU B 223 SHEET 7 AA2 7 PHE B 288 LEU B 298 -1 N GLU B 294 O ILE B 362 CISPEP 1 ASP A 53 PHE A 54 0 -6.22 CISPEP 2 ARG A 172 GLU A 173 0 -11.64 CISPEP 3 ASP A 261 LYS A 262 0 -15.09 CISPEP 4 ALA B 69 GLY B 70 0 3.90 CISPEP 5 GLY B 70 PRO B 71 0 15.57 CISPEP 6 ASP B 261 LYS B 262 0 17.28 CISPEP 7 VAL B 369 GLY B 370 0 0.66 CRYST1 144.768 144.768 76.180 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006908 0.003988 0.000000 0.00000 SCALE2 0.000000 0.007976 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013127 0.00000