HEADER PLANT PROTEIN 18-FEB-20 6LZ7 TITLE TETRAMERIC STRUCTURE OF ZMCRY1A PHR DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CRYPTOCHROME-1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZEA MAYS; SOURCE 3 ORGANISM_COMMON: MAIZE; SOURCE 4 ORGANISM_TAXID: 4577; SOURCE 5 GENE: 100384475, ZEAMMB73_ZM00001D016915; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS CRYPTOCHROME, PHOTORECEPTOR, PHOTOSIGNALING, PLANT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.SHAO,X.ZHANG,P.ZHANG REVDAT 3 29-NOV-23 6LZ7 1 REMARK REVDAT 2 27-MAY-20 6LZ7 1 JRNL REVDAT 1 13-MAY-20 6LZ7 0 JRNL AUTH K.SHAO,X.ZHANG,X.LI,Y.HAO,X.HUANG,M.MA,M.ZHANG,F.YU,H.LIU, JRNL AUTH 2 P.ZHANG JRNL TITL THE OLIGOMERIC STRUCTURES OF PLANT CRYPTOCHROMES. JRNL REF NAT.STRUCT.MOL.BIOL. V. 27 480 2020 JRNL REFN ESSN 1545-9985 JRNL PMID 32398825 JRNL DOI 10.1038/S41594-020-0420-X REMARK 2 REMARK 2 RESOLUTION. 3.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.60 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.338 REMARK 3 COMPLETENESS FOR RANGE (%) : 73.5 REMARK 3 NUMBER OF REFLECTIONS : 15933 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.236 REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.042 REMARK 3 FREE R VALUE TEST SET COUNT : 1600 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.6012 - 7.9620 0.97 1735 195 0.1694 0.2169 REMARK 3 2 7.9620 - 6.3381 0.99 1765 190 0.2322 0.2682 REMARK 3 3 6.3381 - 5.5423 1.00 1769 203 0.2450 0.2967 REMARK 3 4 5.5423 - 5.0380 1.00 1777 197 0.2337 0.2977 REMARK 3 5 5.0380 - 4.6783 0.99 1751 196 0.2206 0.2574 REMARK 3 6 4.6783 - 4.4033 0.73 1288 147 0.2286 0.2795 REMARK 3 7 4.4033 - 4.1833 0.56 996 110 0.2577 0.2878 REMARK 3 8 4.1833 - 4.0016 0.54 959 107 0.2652 0.2491 REMARK 3 9 4.0016 - 3.8479 0.53 944 105 0.2855 0.3479 REMARK 3 10 3.8479 - 3.7153 0.51 907 100 0.3232 0.3577 REMARK 3 11 3.7153 - 3.5994 0.25 442 50 0.3324 0.3377 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.456 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.693 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 63.13 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 4180 REMARK 3 ANGLE : 1.698 5709 REMARK 3 CHIRALITY : 0.076 586 REMARK 3 PLANARITY : 0.013 733 REMARK 3 DIHEDRAL : 18.102 2427 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6LZ7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1300015741. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NFPSS REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9785 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR555 FLAT PANEL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15933 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.599 REMARK 200 RESOLUTION RANGE LOW (A) : 30.610 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 15.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.73 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 1U3C REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20%(W/V) PEG 3350, 0.2M SODIUM REMARK 280 THIOCYANATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 94.04800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 47.02400 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 94.04800 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 47.02400 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 94.04800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 47.02400 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 94.04800 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 47.02400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 79350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -154.02300 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 -154.02300 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ALA A 3 REMARK 465 SER A 4 REMARK 465 GLN A 5 REMARK 465 SER A 6 REMARK 465 SER A 7 REMARK 465 MET A 8 REMARK 465 SER A 9 REMARK 465 GLY A 10 REMARK 465 ALA A 11 REMARK 465 GLY A 12 REMARK 465 GLU A 13 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 216 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 252 O2P FAD A 601 1.96 REMARK 500 OG SER A 71 OE2 GLU A 263 2.04 REMARK 500 O HIS A 455 N TRP A 457 2.07 REMARK 500 O ASP A 395 N3 FAD A 601 2.11 REMARK 500 OG SER A 256 O1P FAD A 601 2.12 REMARK 500 O ARG A 367 OG SER A 371 2.13 REMARK 500 OE1 GLU A 355 OH TYR A 437 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 195 CB CYS A 195 SG -0.103 REMARK 500 TRP A 457 CB TRP A 457 CG -0.116 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 86 NE - CZ - NH2 ANGL. DEV. = 4.9 DEGREES REMARK 500 LEU A 192 CA - CB - CG ANGL. DEV. = 23.5 DEGREES REMARK 500 PRO A 456 C - N - CD ANGL. DEV. = -15.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 38 27.59 -79.71 REMARK 500 ALA A 40 -61.77 -96.05 REMARK 500 ARG A 62 -50.84 -27.95 REMARK 500 ALA A 84 86.48 -62.80 REMARK 500 ALA A 85 -86.05 -105.27 REMARK 500 ARG A 86 151.38 160.90 REMARK 500 ALA A 98 -43.81 -143.47 REMARK 500 PHE A 113 -152.02 -142.34 REMARK 500 PHE A 142 -146.83 -120.95 REMARK 500 GLU A 156 -108.28 50.80 REMARK 500 ARG A 159 -159.39 -123.46 REMARK 500 CYS A 173 55.12 -91.04 REMARK 500 SER A 189 -86.42 -46.79 REMARK 500 LEU A 192 53.72 -49.30 REMARK 500 SER A 193 -87.08 -25.94 REMARK 500 ARG A 194 50.07 -149.89 REMARK 500 TRP A 197 49.42 -58.51 REMARK 500 GLU A 207 35.20 -94.32 REMARK 500 ASP A 239 43.56 -93.63 REMARK 500 SER A 315 107.22 -167.26 REMARK 500 HIS A 316 76.30 55.19 REMARK 500 LYS A 318 81.67 -28.85 REMARK 500 LEU A 321 52.90 -102.08 REMARK 500 PHE A 326 42.98 -83.70 REMARK 500 GLN A 341 -168.35 -120.42 REMARK 500 THR A 359 -12.44 -140.86 REMARK 500 ASP A 395 49.65 -86.41 REMARK 500 SER A 411 -85.09 -48.47 REMARK 500 LEU A 412 123.55 -39.22 REMARK 500 ASP A 432 71.65 -153.75 REMARK 500 LEU A 445 32.28 -97.29 REMARK 500 PRO A 456 -21.78 -28.40 REMARK 500 LEU A 471 119.08 -34.85 REMARK 500 VAL A 480 74.36 41.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 54 ASP A 55 139.95 REMARK 500 TYR A 59 PRO A 60 146.99 REMARK 500 ALA A 84 ALA A 85 138.93 REMARK 500 ALA A 85 ARG A 86 -140.81 REMARK 500 SER A 189 GLY A 190 -138.38 REMARK 500 SER A 193 ARG A 194 128.20 REMARK 500 ARG A 194 CYS A 195 -144.21 REMARK 500 SER A 315 HIS A 316 141.25 REMARK 500 HIS A 455 PRO A 456 -141.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 601 DBREF1 6LZ7 A 1 505 UNP A0A1D6HB66_MAIZE DBREF2 6LZ7 A A0A1D6HB66 1 505 SEQRES 1 A 505 MET SER ALA SER GLN SER SER MET SER GLY ALA GLY GLU SEQRES 2 A 505 PRO GLY ALA ARG ALA VAL VAL TRP PHE ARG ARG ASP LEU SEQRES 3 A 505 ARG VAL GLU ASP ASN PRO ALA LEU ALA ALA ALA ALA ARG SEQRES 4 A 505 ALA ALA GLY GLU VAL VAL PRO ALA TYR VAL TRP ALA PRO SEQRES 5 A 505 GLU GLU ASP GLY ALA TYR TYR PRO GLY ARG VAL SER ARG SEQRES 6 A 505 TRP TRP LEU SER GLN SER LEU LYS HIS LEU ASP ALA SER SEQRES 7 A 505 LEU ARG ARG LEU GLY ALA ALA ARG LEU VAL THR ARG ARG SEQRES 8 A 505 SER ASN ASP ALA VAL ALA ALA LEU LEU ASP LEU VAL ARG SEQRES 9 A 505 CYS THR GLY ALA THR HIS LEU PHE PHE ASN HIS LEU TYR SEQRES 10 A 505 ASP PRO LEU SER LEU VAL ARG ASP TYR ARG VAL LYS GLU SEQRES 11 A 505 GLN LEU ALA ALA GLU GLY ILE ASP VAL GLN SER PHE ASN SEQRES 12 A 505 ALA ASP LEU LEU TYR GLU PRO TRP GLU VAL LEU ASP GLU SEQRES 13 A 505 ASP ARG ARG PRO PHE THR MET PHE ALA PRO PHE TRP ASN SEQRES 14 A 505 ARG CYS LEU CYS MET PRO ASP PRO ALA ALA PRO LEU LEU SEQRES 15 A 505 PRO PRO LYS ARG ILE ASN SER GLY ASP LEU SER ARG CYS SEQRES 16 A 505 PRO TRP ASP GLU LEU VAL PHE GLU ASP GLU SER GLU ARG SEQRES 17 A 505 GLY SER ASN ALA LEU LEU ALA ARG ALA TRP SER PRO GLY SEQRES 18 A 505 TRP GLN ASN ALA ASP LYS ALA LEU THR ALA PHE LEU ASN SEQRES 19 A 505 GLY PRO LEU MET ASP TYR SER VAL ASN ARG LYS LYS ALA SEQRES 20 A 505 ASP SER ALA SER THR SER LEU LEU SER PRO TYR LEU HIS SEQRES 21 A 505 PHE GLY GLU LEU SER VAL ARG LYS VAL PHE HIS GLN VAL SEQRES 22 A 505 ARG MET LYS GLN LEU MET TRP SER ASN ASP GLY ASN HIS SEQRES 23 A 505 ALA GLY GLU GLU SER CYS THR LEU PHE LEU ARG SER ILE SEQRES 24 A 505 GLY LEU ARG GLU TYR SER ARG TYR LEU THR PHE ASN HIS SEQRES 25 A 505 PRO CYS SER HIS GLU LYS PRO LEU LEU SER HIS LEU ARG SEQRES 26 A 505 PHE PHE PRO TRP VAL VAL ASN GLU VAL TYR PHE LYS VAL SEQRES 27 A 505 TRP ARG GLN GLY ARG THR GLY TYR PRO LEU VAL ASP ALA SEQRES 28 A 505 GLY MET ARG GLU LEU TRP ALA THR GLY TRP VAL HIS ASP SEQRES 29 A 505 ARG ILE ARG VAL VAL VAL SER SER PHE PHE VAL LYS VAL SEQRES 30 A 505 LEU GLN LEU PRO TRP ARG TRP GLY MET LYS TYR PHE TRP SEQRES 31 A 505 ASP THR LEU LEU ASP ALA ASP LEU GLU SER ASP ALA LEU SEQRES 32 A 505 GLY TRP GLN TYR ILE SER GLY SER LEU PRO ASP GLY ARG SEQRES 33 A 505 GLU LEU ASP ARG ILE ASP ASN PRO GLN PHE GLU GLY TYR SEQRES 34 A 505 LYS PHE ASP PRO HIS GLY GLU TYR VAL ARG ARG TRP LEU SEQRES 35 A 505 PRO GLU LEU ALA ARG LEU PRO THR GLU TRP ILE HIS HIS SEQRES 36 A 505 PRO TRP ASP ALA PRO GLU SER VAL LEU GLN ALA ALA GLY SEQRES 37 A 505 VAL GLU LEU GLY SER ASN TYR PRO ARG PRO ILE VAL GLU SEQRES 38 A 505 LEU ASP ALA ALA ASN SER ARG LEU GLN ASP ALA LEU SER SEQRES 39 A 505 GLU MET TRP GLU LEU GLU ALA ALA SER ARG ALA HET FAD A 601 53 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE FORMUL 2 FAD C27 H33 N9 O15 P2 HELIX 1 AA1 ASN A 31 ALA A 41 1 11 HELIX 2 AA2 PRO A 52 GLY A 56 5 5 HELIX 3 AA3 GLY A 61 GLY A 83 1 23 HELIX 4 AA4 ALA A 95 GLY A 107 1 13 HELIX 5 AA5 SER A 121 VAL A 128 1 8 HELIX 6 AA6 LYS A 129 ALA A 134 1 6 HELIX 7 AA7 PHE A 164 CYS A 173 1 10 HELIX 8 AA8 LEU A 213 TRP A 218 1 6 HELIX 9 AA9 GLY A 221 GLY A 235 1 15 HELIX 10 AB1 ASP A 239 ARG A 244 1 6 HELIX 11 AB2 LEU A 255 PHE A 261 1 7 HELIX 12 AB3 SER A 265 GLY A 284 1 20 HELIX 13 AB4 ASN A 285 HIS A 312 1 28 HELIX 14 AB5 LEU A 321 ARG A 325 5 5 HELIX 15 AB6 VAL A 334 GLN A 341 1 8 HELIX 16 AB7 TYR A 346 GLY A 360 1 15 HELIX 17 AB8 HIS A 363 VAL A 377 1 15 HELIX 18 AB9 PRO A 381 LEU A 393 1 13 HELIX 19 AC1 ASP A 397 SER A 409 1 13 HELIX 20 AC2 ASN A 423 ASP A 432 1 10 HELIX 21 AC3 LEU A 442 ALA A 446 5 5 HELIX 22 AC4 PRO A 449 ILE A 453 5 5 HELIX 23 AC5 PRO A 460 GLN A 465 1 6 HELIX 24 AC6 ALA A 466 GLY A 468 5 3 HELIX 25 AC7 LEU A 482 ALA A 501 1 20 HELIX 26 AC8 ALA A 502 ALA A 505 5 4 SHEET 1 AA1 5 VAL A 88 ARG A 91 0 SHEET 2 AA1 5 GLU A 43 TRP A 50 1 N TYR A 48 O VAL A 88 SHEET 3 AA1 5 ARG A 17 TRP A 21 1 N VAL A 20 O ALA A 47 SHEET 4 AA1 5 LEU A 111 ASN A 114 1 O PHE A 112 N VAL A 19 SHEET 5 AA1 5 VAL A 139 PHE A 142 1 O GLN A 140 N PHE A 113 SSBOND 1 CYS A 105 CYS A 195 1555 1555 2.01 CISPEP 1 ALA A 57 TYR A 58 0 -0.42 CISPEP 2 HIS A 316 GLU A 317 0 3.21 SITE 1 AC1 21 TYR A 240 THR A 252 SER A 253 LEU A 254 SITE 2 AC1 21 LEU A 255 SER A 256 SER A 298 LEU A 301 SITE 3 AC1 21 ARG A 302 TRP A 361 ASP A 364 ARG A 367 SITE 4 AC1 21 VAL A 368 SER A 371 ASP A 395 ALA A 396 SITE 5 AC1 21 ASP A 397 SER A 400 ASP A 401 LEU A 403 SITE 6 AC1 21 GLY A 404 CRYST1 154.023 154.023 141.072 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006493 0.003748 0.000000 0.00000 SCALE2 0.000000 0.007497 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007089 0.00000