HEADER LIGASE 19-FEB-20 6M01 TITLE THE STRUCTURE OF HITB-HITD COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE ATP-DEPENDENT B-AMINOACYL-ACP SYNTHETASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HITB; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PUTATIVE ACP; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: HITD; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EMBLEYA SCABRISPORA; SOURCE 3 ORGANISM_TAXID: 159449; SOURCE 4 GENE: HITB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PCOLD I; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: EMBLEYA SCABRISPORA; SOURCE 12 ORGANISM_TAXID: 159449; SOURCE 13 GENE: HITD; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PCOLD I KEYWDS HITACHIMYCIN, POLYKETIDE BIOSYNTHESIS, CARRIER PROTEIN, ADENYLATION, KEYWDS 2 ATP BINDING, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR A.MIYANAGA,S.KURIHARA,F.KUDO,T.EGUCHI REVDAT 3 29-NOV-23 6M01 1 REMARK REVDAT 2 29-JUL-20 6M01 1 JRNL REVDAT 1 08-JUL-20 6M01 0 JRNL AUTH A.MIYANAGA,S.KURIHARA,T.CHISUGA,F.KUDO,T.EGUCHI JRNL TITL STRUCTURAL CHARACTERIZATION OF COMPLEX OF ADENYLATION DOMAIN JRNL TITL 2 AND CARRIER PROTEIN BY USING PANTETHEINE CROSS-LINKING JRNL TITL 3 PROBE. JRNL REF ACS CHEM.BIOL. V. 15 1808 2020 JRNL REFN ESSN 1554-8937 JRNL PMID 32608966 JRNL DOI 10.1021/ACSCHEMBIO.0C00403 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 36829 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1837 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2704 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.51 REMARK 3 BIN R VALUE (WORKING SET) : 0.3130 REMARK 3 BIN FREE R VALUE SET COUNT : 146 REMARK 3 BIN FREE R VALUE : 0.3250 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4363 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 57 REMARK 3 SOLVENT ATOMS : 294 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.75000 REMARK 3 B22 (A**2) : 3.21000 REMARK 3 B33 (A**2) : -1.39000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.09000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.203 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.182 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.167 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.399 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4529 ; 0.008 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4290 ; 0.009 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6164 ; 1.566 ; 1.652 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9855 ; 1.274 ; 1.582 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 564 ; 6.367 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 260 ;28.346 ;19.500 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 686 ;15.773 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 55 ;16.331 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 575 ; 0.147 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5131 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1035 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6M01 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1300015786. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-NOV-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NUMERICAL LINK TYPE SI(111) REMARK 200 DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38673 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.56900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5JJQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS-HCL, SODIUM ACETATE, PEG 4000, REMARK 280 PEG 400, PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 44.04500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.84000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 44.04500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 45.84000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 945 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -15 REMARK 465 ASN A -14 REMARK 465 HIS A -13 REMARK 465 LYS A -12 REMARK 465 VAL A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 ILE A -4 REMARK 465 GLU A -3 REMARK 465 GLY A -2 REMARK 465 ARG A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 VAL A 3 REMARK 465 ILE A 4 REMARK 465 SER A 5 REMARK 465 ASN A 6 REMARK 465 GLY A 7 REMARK 465 ARG A 8 REMARK 465 THR A 176 REMARK 465 SER A 177 REMARK 465 GLY A 178 REMARK 465 THR A 179 REMARK 465 THR A 180 REMARK 465 ARG A 464 REMARK 465 PRO A 465 REMARK 465 GLY A 466 REMARK 465 GLU A 478 REMARK 465 PRO A 479 REMARK 465 GLY A 480 REMARK 465 GLY A 481 REMARK 465 ALA A 482 REMARK 465 ASP A 483 REMARK 465 ASP A 495 REMARK 465 THR A 496 REMARK 465 THR A 515 REMARK 465 VAL A 516 REMARK 465 ASN A 517 REMARK 465 GLY A 518 REMARK 465 LYS A 519 REMARK 465 VAL A 520 REMARK 465 ASP A 521 REMARK 465 ARG A 522 REMARK 465 ALA A 523 REMARK 465 ASP A 524 REMARK 465 LEU A 525 REMARK 465 ALA A 526 REMARK 465 THR A 527 REMARK 465 ARG A 528 REMARK 465 VAL A 529 REMARK 465 ALA A 530 REMARK 465 GLY A 531 REMARK 465 PRO A 532 REMARK 465 PHE A 533 REMARK 465 MET B -15 REMARK 465 ASN B -14 REMARK 465 HIS B -13 REMARK 465 LYS B -12 REMARK 465 VAL B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 ILE B -4 REMARK 465 GLU B -3 REMARK 465 GLY B -2 REMARK 465 ARG B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 SER B 80 REMARK 465 ALA B 81 REMARK 465 ALA B 82 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY A 319 O2B ADP A 601 2.00 REMARK 500 O HOH A 830 O HOH A 865 2.12 REMARK 500 OE2 GLU A 450 O HOH A 701 2.16 REMARK 500 O HOH A 713 O HOH A 922 2.17 REMARK 500 OE1 GLU A 67 O HOH A 702 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 31 55.16 -151.23 REMARK 500 ASP A 73 -12.59 89.27 REMARK 500 LEU A 309 66.93 -119.06 REMARK 500 MET A 324 -52.78 75.58 REMARK 500 CYS A 326 -67.25 -143.87 REMARK 500 ASP A 400 50.53 -161.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9EF B 101 DBREF1 6M01 A 1 533 UNP A0A0F7R6G7_9ACTN DBREF2 6M01 A A0A0F7R6G7 1 533 DBREF1 6M01 B 1 82 UNP A0A0F7R2R9_9ACTN DBREF2 6M01 B A0A0F7R2R9 1 82 SEQADV 6M01 MET A -15 UNP A0A0F7R6G EXPRESSION TAG SEQADV 6M01 ASN A -14 UNP A0A0F7R6G EXPRESSION TAG SEQADV 6M01 HIS A -13 UNP A0A0F7R6G EXPRESSION TAG SEQADV 6M01 LYS A -12 UNP A0A0F7R6G EXPRESSION TAG SEQADV 6M01 VAL A -11 UNP A0A0F7R6G EXPRESSION TAG SEQADV 6M01 HIS A -10 UNP A0A0F7R6G EXPRESSION TAG SEQADV 6M01 HIS A -9 UNP A0A0F7R6G EXPRESSION TAG SEQADV 6M01 HIS A -8 UNP A0A0F7R6G EXPRESSION TAG SEQADV 6M01 HIS A -7 UNP A0A0F7R6G EXPRESSION TAG SEQADV 6M01 HIS A -6 UNP A0A0F7R6G EXPRESSION TAG SEQADV 6M01 HIS A -5 UNP A0A0F7R6G EXPRESSION TAG SEQADV 6M01 ILE A -4 UNP A0A0F7R6G EXPRESSION TAG SEQADV 6M01 GLU A -3 UNP A0A0F7R6G EXPRESSION TAG SEQADV 6M01 GLY A -2 UNP A0A0F7R6G EXPRESSION TAG SEQADV 6M01 ARG A -1 UNP A0A0F7R6G EXPRESSION TAG SEQADV 6M01 HIS A 0 UNP A0A0F7R6G EXPRESSION TAG SEQADV 6M01 CYS A 221 UNP A0A0F7R6G ASP 221 ENGINEERED MUTATION SEQADV 6M01 MET B -15 UNP A0A0F7R2R EXPRESSION TAG SEQADV 6M01 ASN B -14 UNP A0A0F7R2R EXPRESSION TAG SEQADV 6M01 HIS B -13 UNP A0A0F7R2R EXPRESSION TAG SEQADV 6M01 LYS B -12 UNP A0A0F7R2R EXPRESSION TAG SEQADV 6M01 VAL B -11 UNP A0A0F7R2R EXPRESSION TAG SEQADV 6M01 HIS B -10 UNP A0A0F7R2R EXPRESSION TAG SEQADV 6M01 HIS B -9 UNP A0A0F7R2R EXPRESSION TAG SEQADV 6M01 HIS B -8 UNP A0A0F7R2R EXPRESSION TAG SEQADV 6M01 HIS B -7 UNP A0A0F7R2R EXPRESSION TAG SEQADV 6M01 HIS B -6 UNP A0A0F7R2R EXPRESSION TAG SEQADV 6M01 HIS B -5 UNP A0A0F7R2R EXPRESSION TAG SEQADV 6M01 ILE B -4 UNP A0A0F7R2R EXPRESSION TAG SEQADV 6M01 GLU B -3 UNP A0A0F7R2R EXPRESSION TAG SEQADV 6M01 GLY B -2 UNP A0A0F7R2R EXPRESSION TAG SEQADV 6M01 ARG B -1 UNP A0A0F7R2R EXPRESSION TAG SEQADV 6M01 HIS B 0 UNP A0A0F7R2R EXPRESSION TAG SEQRES 1 A 549 MET ASN HIS LYS VAL HIS HIS HIS HIS HIS HIS ILE GLU SEQRES 2 A 549 GLY ARG HIS MET ARG VAL ILE SER ASN GLY ARG ARG ALA SEQRES 3 A 549 ALA ARG ALA ARG GLU SER VAL ASP ASN LEU TYR TRP PHE SEQRES 4 A 549 MET LEU ALA ALA ALA ASN SER ALA PRO ASP THR PRO ALA SEQRES 5 A 549 PHE VAL THR ARG ASP GLY GLU GLY GLY VAL ARG THR LEU SEQRES 6 A 549 SER TYR ARG GLU LEU ARG THR ARG VAL ASP ASP PHE ALA SEQRES 7 A 549 ALA ALA LEU ALA GLU LEU GLY LEU ASP VAL ASP ASP ARG SEQRES 8 A 549 VAL VAL LEU GLU ALA ASN VAL THR PRO ASP ALA VAL ALA SEQRES 9 A 549 MET LEU LEU ALA CYS SER LEU LEU GLY LEU PRO PHE ILE SEQRES 10 A 549 PRO VAL SER PRO GLU THR PRO SER GLY ARG LEU ARG SER SEQRES 11 A 549 ILE LEU ASP THR ALA GLU PRO ALA LEU PHE ALA GLN ALA SEQRES 12 A 549 GLU ASP GLY GLY ARG ALA ASP VAL PRO ALA THR VAL GLY SEQRES 13 A 549 THR ALA ARG PHE GLY ALA GLY GLY LEU ARG VAL GLU ARG SEQRES 14 A 549 ALA PRO ARG ALA ARG VAL ARG HIS ARG ARG GLU ILE VAL SEQRES 15 A 549 GLY THR ASP THR ALA TYR ILE ILE PHE THR SER GLY THR SEQRES 16 A 549 THR GLY ARG PRO LYS GLY VAL VAL MET SER HIS ARG SER SEQRES 17 A 549 VAL VAL SER LEU TYR ARG ALA ILE LEU GLU GLN GLY LEU SEQRES 18 A 549 ILE THR PRO GLU ASP ARG ILE ALA THR THR SER PRO LEU SEQRES 19 A 549 GLN PHE CYS PHE ALA LEU PHE ASP ILE GLY LEU ALA LEU SEQRES 20 A 549 GLY THR GLY ALA ALA LEU VAL PRO VAL PRO ARG GLU GLU SEQRES 21 A 549 LEU ASN TRP PRO ARG ARG PHE LEU ALA PHE LEU GLY ASP SEQRES 22 A 549 THR GLY ALA THR GLN VAL HIS GLY VAL PRO SER ILE TRP SEQRES 23 A 549 ARG PRO VAL LEU ARG HIS GLU PRO GLU LEU LEU ALA GLY SEQRES 24 A 549 LEU ASP ARG VAL ARG GLY ILE LEU PHE THR GLY GLU ASP SEQRES 25 A 549 PHE PRO LEU PRO GLU LEU ARG HIS LEU GLN GLY LEU LEU SEQRES 26 A 549 PRO HIS ALA ARG ILE VAL ASN GLY TYR GLY ALA THR GLU SEQRES 27 A 549 SER MET ALA CYS SER PHE THR GLU VAL PRO ARG PRO ILE SEQRES 28 A 549 PRO SER ASP LEU GLU ARG LEU SER ILE GLY PHE PRO LEU SEQRES 29 A 549 PRO GLY PHE ASP VAL SER LEU LEU ASP GLU HIS GLY ARG SEQRES 30 A 549 PRO VAL GLU GLU ILE GLY VAL ALA GLY GLN ILE HIS LEU SEQRES 31 A 549 ARG ALA PRO SER MET PHE SER GLY TYR TRP ASP ASP PRO SEQRES 32 A 549 GLU ALA THR ALA ARG VAL LEU VAL SER ASP PRO LEU ASP SEQRES 33 A 549 PRO ARG SER GLY ARG THR VAL LEU ARG SER GLY ASP LEU SEQRES 34 A 549 ALA TYR ARG GLY GLU ASP GLY GLU LEU TYR PHE ALA GLY SEQRES 35 A 549 ARG VAL ASP ALA GLN VAL GLN ILE ARG GLY ASN ARG VAL SEQRES 36 A 549 GLU PRO GLY GLU VAL GLU ARG ARG LEU LEU GLU PHE PRO SEQRES 37 A 549 GLY ILE SER ALA ALA VAL ALA LEU LEU VAL PRO ARG PRO SEQRES 38 A 549 GLY ASN ASP PRO VAL LEU HIS ALA PHE VAL VAL VAL GLU SEQRES 39 A 549 PRO GLY GLY ALA ASP PHE ASP LYS ALA LYS ALA ARG ALA SEQRES 40 A 549 PHE CYS ALA ASP THR LEU PRO GLY TYR MET ILE PRO ALA SEQRES 41 A 549 ASN ILE VAL ALA VAL ASP ASP ILE PRO LEU THR VAL ASN SEQRES 42 A 549 GLY LYS VAL ASP ARG ALA ASP LEU ALA THR ARG VAL ALA SEQRES 43 A 549 GLY PRO PHE SEQRES 1 B 98 MET ASN HIS LYS VAL HIS HIS HIS HIS HIS HIS ILE GLU SEQRES 2 B 98 GLY ARG HIS MET TRP ASP ASP GLN PHE GLU ALA ILE VAL SEQRES 3 B 98 ARG ARG TYR VAL PRO PHE LEU GLY PRO ASP GLU ARG LEU SEQRES 4 B 98 GLY GLY GLY SER GLU LEU ARG ASP LEU GLY LEU ASP SER SEQRES 5 B 98 MET GLY THR VAL GLU LEU LEU ALA ALA LEU GLU GLN ALA SEQRES 6 B 98 TYR GLY ALA ARG PHE VAL ASP ASP ALA LEU ASN MET GLU SEQRES 7 B 98 ASN PHE ALA THR PRO ASP ALA LEU TRP ALA THR LEU SER SEQRES 8 B 98 ARG MET ILE THR SER ALA ALA HET ADP A 601 27 HET GOL A 602 6 HET 9EF B 101 24 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM GOL GLYCEROL HETNAM 9EF N-[2-(ACETYLAMINO)ETHYL]-N~3~-[(2R)-2-HYDROXY-3,3- HETNAM 2 9EF DIMETHYL-4-(PHOSPHONOOXY)BUTANOYL]-BETA-ALANINAMIDE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 GOL C3 H8 O3 FORMUL 5 9EF C13 H26 N3 O8 P FORMUL 6 HOH *294(H2 O) HELIX 1 AA1 ASN A 19 LEU A 25 1 7 HELIX 2 AA2 LEU A 25 ALA A 31 1 7 HELIX 3 AA3 TYR A 51 GLU A 67 1 17 HELIX 4 AA4 THR A 83 LEU A 96 1 14 HELIX 5 AA5 PRO A 108 GLU A 120 1 13 HELIX 6 AA6 HIS A 190 GLU A 202 1 13 HELIX 7 AA7 PHE A 220 THR A 233 1 14 HELIX 8 AA8 PRO A 241 ASN A 246 1 6 HELIX 9 AA9 TRP A 247 GLY A 259 1 13 HELIX 10 AB1 VAL A 266 ILE A 269 5 4 HELIX 11 AB2 TRP A 270 GLU A 277 1 8 HELIX 12 AB3 GLU A 277 ALA A 282 1 6 HELIX 13 AB4 PRO A 298 LEU A 309 1 12 HELIX 14 AB5 ASP A 386 VAL A 393 1 8 HELIX 15 AB6 ASP A 400 GLY A 404 5 5 HELIX 16 AB7 GLU A 440 PHE A 451 1 12 HELIX 17 AB8 ASP A 485 ALA A 494 1 10 HELIX 18 AB9 ASP B 3 TYR B 13 1 11 HELIX 19 AC1 GLU B 28 GLY B 33 5 6 HELIX 20 AC2 ASP B 35 GLY B 51 1 17 HELIX 21 AC3 VAL B 55 LEU B 59 5 5 HELIX 22 AC4 THR B 66 THR B 79 1 14 SHEET 1 AA1 2 PRO A 35 ARG A 40 0 SHEET 2 AA1 2 VAL A 46 SER A 50 -1 O ARG A 47 N THR A 39 SHEET 1 AA2 5 PHE A 100 VAL A 103 0 SHEET 2 AA2 5 VAL A 76 GLU A 79 1 N LEU A 78 O ILE A 101 SHEET 3 AA2 5 LEU A 123 ALA A 127 1 O ALA A 125 N VAL A 77 SHEET 4 AA2 5 GLY A 140 GLY A 145 1 O GLY A 140 N PHE A 124 SHEET 5 AA2 5 GLY A 148 ARG A 153 -1 O ARG A 150 N ARG A 143 SHEET 1 AA3 3 THR A 170 ILE A 174 0 SHEET 2 AA3 3 VAL A 186 SER A 189 -1 O VAL A 186 N ILE A 174 SHEET 3 AA3 3 GLY A 382 TYR A 383 -1 O GLY A 382 N VAL A 187 SHEET 1 AA4 7 ALA A 236 PRO A 239 0 SHEET 2 AA4 7 ARG A 211 THR A 214 1 N ILE A 212 O VAL A 238 SHEET 3 AA4 7 GLN A 262 HIS A 264 1 O GLN A 262 N ALA A 213 SHEET 4 AA4 7 GLY A 289 PHE A 292 1 O LEU A 291 N VAL A 263 SHEET 5 AA4 7 ARG A 313 TYR A 318 1 O GLY A 317 N PHE A 292 SHEET 6 AA4 7 SER A 327 GLU A 330 -1 O THR A 329 N ASN A 316 SHEET 7 AA4 7 PHE A 346 PRO A 347 -1 O PHE A 346 N PHE A 328 SHEET 1 AA5 4 ASP A 352 LEU A 356 0 SHEET 2 AA5 4 GLY A 370 ARG A 375 -1 O ARG A 375 N ASP A 352 SHEET 3 AA5 4 THR A 406 ARG A 416 -1 O LEU A 408 N LEU A 374 SHEET 4 AA5 4 LEU A 394 SER A 396 -1 N VAL A 395 O VAL A 407 SHEET 1 AA6 4 ASP A 352 LEU A 356 0 SHEET 2 AA6 4 GLY A 370 ARG A 375 -1 O ARG A 375 N ASP A 352 SHEET 3 AA6 4 THR A 406 ARG A 416 -1 O LEU A 408 N LEU A 374 SHEET 4 AA6 4 LEU A 422 ARG A 427 -1 O GLY A 426 N LEU A 413 SHEET 1 AA7 2 VAL A 432 ILE A 434 0 SHEET 2 AA7 2 ASN A 437 VAL A 439 -1 O VAL A 439 N VAL A 432 SHEET 1 AA8 3 ALA A 456 VAL A 462 0 SHEET 2 AA8 3 VAL A 470 VAL A 476 -1 O HIS A 472 N LEU A 460 SHEET 3 AA8 3 ASN A 505 ALA A 508 1 O ASN A 505 N ALA A 473 LINK SG CYS A 221 CAA 9EF B 101 1555 1555 1.77 LINK OG SER B 36 PAW 9EF B 101 1555 1555 1.60 CISPEP 1 ARG A 333 PRO A 334 0 -1.04 SITE 1 AC1 20 THR A 293 GLY A 294 GLU A 295 ASN A 316 SITE 2 AC1 20 GLY A 317 TYR A 318 GLY A 319 ALA A 320 SITE 3 AC1 20 THR A 321 ASP A 412 ARG A 427 GLN A 433 SITE 4 AC1 20 GLY A 436 ARG A 438 HOH A 740 HOH A 786 SITE 5 AC1 20 HOH A 796 HOH A 823 HOH A 855 9EF B 101 SITE 1 AC2 6 GLN A 126 ARG A 132 ASP A 134 VAL A 135 SITE 2 AC2 6 ARG A 143 GLU A 152 SITE 1 AC3 12 SER A 216 PHE A 220 CYS A 221 PHE A 222 SITE 2 AC3 12 VAL A 266 THR A 321 ARG A 435 GLY A 436 SITE 3 AC3 12 ASN A 437 ADP A 601 ARG B 30 SER B 36 CRYST1 88.090 91.680 73.740 90.00 100.97 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011352 0.000000 0.002200 0.00000 SCALE2 0.000000 0.010908 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013814 0.00000