data_6M0B # _entry.id 6M0B # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.327 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6M0B WWPDB D_1300015759 BMRB 36314 # _pdbx_database_related.db_name BMRB _pdbx_database_related.details ;Solution NMR structures of DNA minidumbbell formed by 5'-CTTG CGTG-3'. ; _pdbx_database_related.db_id 36314 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 6M0B _pdbx_database_status.recvd_initial_deposition_date 2020-02-21 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs REL _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Ngai, C.K.' 1 0000-0003-0088-4961 'Guo, P.' 2 0000-0001-7760-5786 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Phys.Chem.B _citation.journal_id_ASTM JPCBFK _citation.journal_id_CSD 1278 _citation.journal_id_ISSN 1089-5647 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 124 _citation.language ? _citation.page_first 5131 _citation.page_last 5138 _citation.title 'High-Resolution Structures of DNA Minidumbbells Comprising Type II Tetraloops with a Purine Minor Groove Residue.' _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/acs.jpcb.0c03163 _citation.pdbx_database_id_PubMed 32484672 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ngai, C.K.' 1 ? primary 'Lam, S.L.' 2 ? primary 'Lee, H.K.' 3 ? primary 'Guo, P.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*TP*TP*GP*CP*GP*TP*G)-3') ; 2433.602 1 ? ? ? ? 2 non-polymer syn 'SODIUM ION' 22.990 7 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DT)(DT)(DG)(DC)(DG)(DT)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CTTGCGTG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DT n 1 3 DT n 1 4 DG n 1 5 DC n 1 6 DG n 1 7 DT n 1 8 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 8 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6M0B _struct_ref.pdbx_db_accession 6M0B _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6M0B _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 8 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 6M0B _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 8 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 2 1 1 '2D 1H-1H NOESY' 2 isotropic 3 1 1 '2D DQF-COSY' 2 isotropic 4 1 1 '2D 1H-1H TOCSY' 1 isotropic # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 278 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength '10 NaPi' _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label 'Normal condition' _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents ;1 mM DNA (5'-D(*CP*TP*TP*GP*CP*GP*TP*G)-3'), 10 mM sodium phosphate, 0.02 mM DSS, 99.96% D2O ; _pdbx_nmr_sample_details.solvent_system '99.96% D2O' _pdbx_nmr_sample_details.label MDB_G6 _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 AVANCE ? Bruker 500 ? 2 AVANCE ? Bruker 700 ? # _pdbx_nmr_refine.entry_id 6M0B _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 3 # _pdbx_nmr_ensemble.entry_id 6M0B _pdbx_nmr_ensemble.conformers_calculated_total_number 500 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 6M0B _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 'chemical shift assignment' TopSpin ? 'Bruker Biospin' 2 'structure calculation' Amber ? 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman' 3 refinement Amber ? 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman' # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6M0B _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 6M0B _struct.title ;Solution NMR structures of DNA minidumbbell formed by 5'-CTTG CGTG-3'. ; _struct.pdbx_descriptor ;DNA (5'-D(*CP*TP*TP*GP*CP*GP*TP*G)-3') ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6M0B _struct_keywords.text 'DNA structure, minidumbbell, type II tetraloop, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? A DT 2 OP1 ? ? ? 1_555 D NA . NA ? ? A DT 2 A NA 103 1_555 ? ? ? ? ? ? ? 2.629 ? metalc2 metalc ? ? A DT 2 OP2 ? ? ? 1_555 D NA . NA ? ? A DT 2 A NA 103 1_555 ? ? ? ? ? ? ? 2.558 ? metalc3 metalc ? ? A DT 3 OP1 ? ? ? 1_555 H NA . NA ? ? A DT 3 A NA 107 1_555 ? ? ? ? ? ? ? 2.498 ? metalc4 metalc ? ? A DT 3 OP2 ? ? ? 1_555 G NA . NA ? ? A DT 3 A NA 106 1_555 ? ? ? ? ? ? ? 2.563 ? metalc5 metalc ? ? A DT 3 "O5'" ? ? ? 1_555 G NA . NA ? ? A DT 3 A NA 106 1_555 ? ? ? ? ? ? ? 2.697 ? metalc6 metalc ? ? A DT 3 "O3'" ? ? ? 1_555 B NA . NA ? ? A DT 3 A NA 101 1_555 ? ? ? ? ? ? ? 2.651 ? metalc7 metalc ? ? A DG 4 OP1 ? ? ? 1_555 G NA . NA ? ? A DG 4 A NA 106 1_555 ? ? ? ? ? ? ? 2.503 ? metalc8 metalc ? ? A DG 4 OP2 ? ? ? 1_555 B NA . NA ? ? A DG 4 A NA 101 1_555 ? ? ? ? ? ? ? 2.545 ? metalc9 metalc ? ? A DC 5 OP1 ? ? ? 1_555 F NA . NA ? ? A DC 5 A NA 105 1_555 ? ? ? ? ? ? ? 2.572 ? metalc10 metalc ? ? A DC 5 "O3'" ? ? ? 1_555 F NA . NA ? ? A DC 5 A NA 105 1_555 ? ? ? ? ? ? ? 2.608 ? metalc11 metalc ? ? A DG 6 OP1 ? ? ? 1_555 F NA . NA ? ? A DG 6 A NA 105 1_555 ? ? ? ? ? ? ? 2.832 ? metalc12 metalc ? ? A DG 6 OP2 ? ? ? 1_555 C NA . NA ? ? A DG 6 A NA 102 1_555 ? ? ? ? ? ? ? 2.693 ? metalc13 metalc ? ? A DG 6 "O5'" ? ? ? 1_555 C NA . NA ? ? A DG 6 A NA 102 1_555 ? ? ? ? ? ? ? 2.612 ? metalc14 metalc ? ? A DG 6 O6 ? ? ? 1_555 H NA . NA ? ? A DG 6 A NA 107 1_555 ? ? ? ? ? ? ? 2.596 ? metalc15 metalc ? ? A DT 7 OP1 ? ? ? 1_555 E NA . NA ? ? A DT 7 A NA 104 1_555 ? ? ? ? ? ? ? 2.488 ? metalc16 metalc ? ? A DT 7 OP2 ? ? ? 1_555 C NA . NA ? ? A DT 7 A NA 102 1_555 ? ? ? ? ? ? ? 2.533 ? metalc17 metalc ? ? A DG 8 OP1 ? ? ? 1_555 E NA . NA ? ? A DG 8 A NA 104 1_555 ? ? ? ? ? ? ? 2.471 ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 A DG 4 N1 ? ? A DC 1 A DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 A DG 4 O6 ? ? A DC 1 A DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 A DG 4 N2 ? ? A DC 1 A DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 8 N1 ? ? A DC 5 A DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 8 O6 ? ? A DC 5 A DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 8 N2 ? ? A DC 5 A DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A NA 101 ? 2 'binding site for residue NA A 101' AC2 Software A NA 102 ? 2 'binding site for residue NA A 102' AC3 Software A NA 103 ? 1 'binding site for residue NA A 103' AC4 Software A NA 104 ? 2 'binding site for residue NA A 104' AC5 Software A NA 105 ? 2 'binding site for residue NA A 105' AC6 Software A NA 106 ? 2 'binding site for residue NA A 106' AC7 Software A NA 107 ? 3 'binding site for residue NA A 107' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 DT A 3 ? DT A 3 . ? 1_555 ? 2 AC1 2 DG A 4 ? DG A 4 . ? 1_555 ? 3 AC2 2 DG A 6 ? DG A 6 . ? 1_555 ? 4 AC2 2 DT A 7 ? DT A 7 . ? 1_555 ? 5 AC3 1 DT A 2 ? DT A 2 . ? 1_555 ? 6 AC4 2 DT A 7 ? DT A 7 . ? 1_555 ? 7 AC4 2 DG A 8 ? DG A 8 . ? 1_555 ? 8 AC5 2 DC A 5 ? DC A 5 . ? 1_555 ? 9 AC5 2 DG A 6 ? DG A 6 . ? 1_555 ? 10 AC6 2 DT A 3 ? DT A 3 . ? 1_555 ? 11 AC6 2 DG A 4 ? DG A 4 . ? 1_555 ? 12 AC7 3 DT A 2 ? DT A 2 . ? 1_555 ? 13 AC7 3 DT A 3 ? DT A 3 . ? 1_555 ? 14 AC7 3 DG A 6 ? DG A 6 . ? 1_555 ? # _atom_sites.entry_id 6M0B _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N NA O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 DT 2 2 2 DT DT A . n A 1 3 DT 3 3 3 DT DT A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DC 5 5 5 DC DC A . n A 1 6 DG 6 6 6 DG DG A . n A 1 7 DT 7 7 7 DT DT A . n A 1 8 DG 8 8 8 DG DG A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA 1 101 101 NA NA A . C 2 NA 1 102 102 NA NA A . D 2 NA 1 103 103 NA NA A . E 2 NA 1 104 104 NA NA A . F 2 NA 1 105 105 NA NA A . G 2 NA 1 106 106 NA NA A . H 2 NA 1 107 107 NA NA A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 820 ? 1 MORE -65 ? 1 'SSA (A^2)' 1620 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? A DT 2 ? A DT 2 ? 1_555 NA ? D NA . ? A NA 103 ? 1_555 OP2 ? A DT 2 ? A DT 2 ? 1_555 58.8 ? 2 OP1 ? A DT 3 ? A DT 3 ? 1_555 NA ? H NA . ? A NA 107 ? 1_555 O6 ? A DG 6 ? A DG 6 ? 1_555 78.0 ? 3 OP2 ? A DT 3 ? A DT 3 ? 1_555 NA ? G NA . ? A NA 106 ? 1_555 "O5'" ? A DT 3 ? A DT 3 ? 1_555 56.0 ? 4 OP2 ? A DT 3 ? A DT 3 ? 1_555 NA ? G NA . ? A NA 106 ? 1_555 OP1 ? A DG 4 ? A DG 4 ? 1_555 151.2 ? 5 "O5'" ? A DT 3 ? A DT 3 ? 1_555 NA ? G NA . ? A NA 106 ? 1_555 OP1 ? A DG 4 ? A DG 4 ? 1_555 95.8 ? 6 "O3'" ? A DT 3 ? A DT 3 ? 1_555 NA ? B NA . ? A NA 101 ? 1_555 OP2 ? A DG 4 ? A DG 4 ? 1_555 57.3 ? 7 OP1 ? A DC 5 ? A DC 5 ? 1_555 NA ? F NA . ? A NA 105 ? 1_555 "O3'" ? A DC 5 ? A DC 5 ? 1_555 102.8 ? 8 OP1 ? A DC 5 ? A DC 5 ? 1_555 NA ? F NA . ? A NA 105 ? 1_555 OP1 ? A DG 6 ? A DG 6 ? 1_555 157.1 ? 9 "O3'" ? A DC 5 ? A DC 5 ? 1_555 NA ? F NA . ? A NA 105 ? 1_555 OP1 ? A DG 6 ? A DG 6 ? 1_555 54.3 ? 10 OP2 ? A DG 6 ? A DG 6 ? 1_555 NA ? C NA . ? A NA 102 ? 1_555 "O5'" ? A DG 6 ? A DG 6 ? 1_555 55.9 ? 11 OP2 ? A DG 6 ? A DG 6 ? 1_555 NA ? C NA . ? A NA 102 ? 1_555 OP2 ? A DT 7 ? A DT 7 ? 1_555 158.8 ? 12 "O5'" ? A DG 6 ? A DG 6 ? 1_555 NA ? C NA . ? A NA 102 ? 1_555 OP2 ? A DT 7 ? A DT 7 ? 1_555 103.2 ? 13 OP1 ? A DT 7 ? A DT 7 ? 1_555 NA ? E NA . ? A NA 104 ? 1_555 OP1 ? A DG 8 ? A DG 8 ? 1_555 131.0 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-06-17 2 'Structure model' 1 1 2020-07-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 2 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation.title' # _pdbx_entry_details.entry_id 6M0B _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 ;DNA (5'-D(*CP*TP*TP*GP*CP*GP*TP*G)-3') ; 1 ? mM 'natural abundance' 1 'sodium phosphate' 10 ? mM 'natural abundance' 1 DSS 0.02 ? mM 'natural abundance' # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 113.37 108.30 5.07 0.30 N 2 1 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 112.95 108.30 4.65 0.30 N 3 1 "C3'" A DT 2 ? ? "O3'" A DT 2 ? ? P A DT 3 ? ? 128.36 119.70 8.66 1.20 Y 4 1 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 113.03 108.30 4.73 0.30 N 5 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 112.07 108.30 3.77 0.30 N 6 1 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 110.97 108.30 2.67 0.30 N 7 2 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 112.18 108.30 3.88 0.30 N 8 2 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 111.78 108.30 3.48 0.30 N 9 2 "C3'" A DT 2 ? ? "O3'" A DT 2 ? ? P A DT 3 ? ? 128.33 119.70 8.63 1.20 Y 10 2 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 113.03 108.30 4.73 0.30 N 11 2 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 114.26 108.30 5.96 0.30 N 12 2 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 110.13 108.30 1.83 0.30 N 13 2 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 110.85 108.30 2.55 0.30 N 14 3 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 115.03 108.30 6.73 0.30 N 15 3 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 114.20 108.30 5.90 0.30 N 16 3 "C3'" A DT 2 ? ? "O3'" A DT 2 ? ? P A DT 3 ? ? 128.43 119.70 8.73 1.20 Y 17 3 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 112.35 108.30 4.05 0.30 N 18 3 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 111.91 108.30 3.61 0.30 N 19 3 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 112.14 108.30 3.84 0.30 N 20 3 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.10 108.30 2.80 0.30 N 21 3 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 119.29 122.90 -3.61 0.60 N 22 4 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 112.46 108.30 4.16 0.30 N 23 4 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 111.90 108.30 3.60 0.30 N 24 4 "C3'" A DT 2 ? ? "O3'" A DT 2 ? ? P A DT 3 ? ? 128.35 119.70 8.65 1.20 Y 25 4 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 113.65 108.30 5.35 0.30 N 26 4 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 111.82 108.30 3.52 0.30 N 27 4 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 110.89 108.30 2.59 0.30 N 28 5 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 114.44 108.30 6.14 0.30 N 29 5 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 112.89 108.30 4.59 0.30 N 30 5 "C3'" A DT 2 ? ? "O3'" A DT 2 ? ? P A DT 3 ? ? 128.27 119.70 8.57 1.20 Y 31 5 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 113.00 108.30 4.70 0.30 N 32 5 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 112.32 108.30 4.02 0.30 N 33 5 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 110.48 108.30 2.18 0.30 N 34 6 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 112.42 108.30 4.12 0.30 N 35 6 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 111.82 108.30 3.52 0.30 N 36 6 "C3'" A DT 2 ? ? "O3'" A DT 2 ? ? P A DT 3 ? ? 128.04 119.70 8.34 1.20 Y 37 6 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 112.72 108.30 4.42 0.30 N 38 6 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 113.84 108.30 5.54 0.30 N 39 6 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.09 108.30 2.79 0.30 N 40 7 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 114.30 108.30 6.00 0.30 N 41 7 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 112.93 108.30 4.63 0.30 N 42 7 "C3'" A DT 2 ? ? "O3'" A DT 2 ? ? P A DT 3 ? ? 128.25 119.70 8.55 1.20 Y 43 7 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 111.60 108.30 3.30 0.30 N 44 7 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.78 108.30 2.48 0.30 N 45 7 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 112.44 108.30 4.14 0.30 N 46 7 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.04 108.30 2.74 0.30 N 47 8 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 114.54 108.30 6.24 0.30 N 48 8 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 113.63 108.30 5.33 0.30 N 49 8 "C3'" A DT 2 ? ? "O3'" A DT 2 ? ? P A DT 3 ? ? 128.94 119.70 9.24 1.20 Y 50 8 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 111.87 108.30 3.57 0.30 N 51 8 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.49 108.30 2.19 0.30 N 52 8 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 112.13 108.30 3.83 0.30 N 53 8 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 110.11 108.30 1.81 0.30 N 54 8 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 119.12 122.90 -3.78 0.60 N 55 9 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 115.53 108.30 7.23 0.30 N 56 9 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 112.74 108.30 4.44 0.30 N 57 9 "C3'" A DT 2 ? ? "O3'" A DT 2 ? ? P A DT 3 ? ? 128.28 119.70 8.58 1.20 Y 58 9 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 113.39 108.30 5.09 0.30 N 59 9 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.39 108.30 2.09 0.30 N 60 9 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 111.86 108.30 3.56 0.30 N 61 9 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 110.82 108.30 2.52 0.30 N 62 10 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 113.89 108.30 5.59 0.30 N 63 10 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 112.83 108.30 4.53 0.30 N 64 10 "C3'" A DT 2 ? ? "O3'" A DT 2 ? ? P A DT 3 ? ? 129.03 119.70 9.33 1.20 Y 65 10 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 111.52 108.30 3.22 0.30 N 66 10 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.66 108.30 2.36 0.30 N 67 10 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 112.07 108.30 3.77 0.30 N 68 10 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 110.77 108.30 2.47 0.30 N 69 10 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 119.16 122.90 -3.74 0.60 N 70 11 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 113.27 108.30 4.97 0.30 N 71 11 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 113.50 108.30 5.20 0.30 N 72 11 "C3'" A DT 2 ? ? "O3'" A DT 2 ? ? P A DT 3 ? ? 128.92 119.70 9.22 1.20 Y 73 11 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 112.21 108.30 3.91 0.30 N 74 11 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.81 108.30 2.51 0.30 N 75 11 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 112.10 108.30 3.80 0.30 N 76 11 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 110.64 108.30 2.34 0.30 N 77 12 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 113.02 108.30 4.72 0.30 N 78 12 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 112.86 108.30 4.56 0.30 N 79 12 "C3'" A DT 2 ? ? "O3'" A DT 2 ? ? P A DT 3 ? ? 128.34 119.70 8.64 1.20 Y 80 12 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 112.25 108.30 3.95 0.30 N 81 12 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 112.02 108.30 3.72 0.30 N 82 12 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 112.53 108.30 4.23 0.30 N 83 12 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 110.37 108.30 2.07 0.30 N 84 13 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 112.07 108.30 3.77 0.30 N 85 13 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 110.92 108.30 2.62 0.30 N 86 13 "C3'" A DT 2 ? ? "O3'" A DT 2 ? ? P A DT 3 ? ? 128.17 119.70 8.47 1.20 Y 87 13 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 112.71 108.30 4.41 0.30 N 88 13 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 112.67 108.30 4.37 0.30 N 89 13 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 111.90 108.30 3.60 0.30 N 90 13 "C3'" A DG 6 ? ? "O3'" A DG 6 ? ? P A DT 7 ? ? 127.73 119.70 8.03 1.20 Y 91 14 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 113.41 108.30 5.11 0.30 N 92 14 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 112.74 108.30 4.44 0.30 N 93 14 "C3'" A DT 2 ? ? "O3'" A DT 2 ? ? P A DT 3 ? ? 128.04 119.70 8.34 1.20 Y 94 14 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 112.24 108.30 3.94 0.30 N 95 14 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 111.84 108.30 3.54 0.30 N 96 14 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.30 108.30 3.00 0.30 N 97 15 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 113.80 108.30 5.50 0.30 N 98 15 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 111.66 108.30 3.36 0.30 N 99 15 "C3'" A DT 2 ? ? "O3'" A DT 2 ? ? P A DT 3 ? ? 128.19 119.70 8.49 1.20 Y 100 15 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 112.42 108.30 4.12 0.30 N 101 15 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 113.40 108.30 5.10 0.30 N 102 15 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 110.27 108.30 1.97 0.30 N 103 15 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 110.51 108.30 2.21 0.30 N 104 15 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 119.07 122.90 -3.83 0.60 N 105 16 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 111.78 108.30 3.48 0.30 N 106 16 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 111.46 108.30 3.16 0.30 N 107 16 "C3'" A DT 2 ? ? "O3'" A DT 2 ? ? P A DT 3 ? ? 128.14 119.70 8.44 1.20 Y 108 16 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 112.31 108.30 4.01 0.30 N 109 16 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 112.49 108.30 4.19 0.30 N 110 16 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 110.58 108.30 2.28 0.30 N 111 16 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.78 108.30 3.48 0.30 N 112 17 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 113.11 108.30 4.81 0.30 N 113 17 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 112.31 108.30 4.01 0.30 N 114 17 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.21 108.30 1.91 0.30 N 115 17 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 112.17 108.30 3.87 0.30 N 116 17 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.39 108.30 3.09 0.30 N 117 18 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 114.12 108.30 5.82 0.30 N 118 18 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 112.47 108.30 4.17 0.30 N 119 18 "C3'" A DT 2 ? ? "O3'" A DT 2 ? ? P A DT 3 ? ? 128.09 119.70 8.39 1.20 Y 120 18 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 112.67 108.30 4.37 0.30 N 121 18 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.69 108.30 2.39 0.30 N 122 18 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 112.24 108.30 3.94 0.30 N 123 18 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 110.48 108.30 2.18 0.30 N 124 18 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 119.25 122.90 -3.65 0.60 N 125 19 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 113.35 108.30 5.05 0.30 N 126 19 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 112.04 108.30 3.74 0.30 N 127 19 "C3'" A DT 2 ? ? "O3'" A DT 2 ? ? P A DT 3 ? ? 128.17 119.70 8.47 1.20 Y 128 19 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 112.31 108.30 4.01 0.30 N 129 19 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 111.18 108.30 2.88 0.30 N 130 19 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 111.63 108.30 3.33 0.30 N 131 19 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.51 108.30 3.21 0.30 N 132 20 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 113.85 108.30 5.55 0.30 N 133 20 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 112.14 108.30 3.84 0.30 N 134 20 "C3'" A DT 2 ? ? "O3'" A DT 2 ? ? P A DT 3 ? ? 128.21 119.70 8.51 1.20 Y 135 20 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 111.74 108.30 3.44 0.30 N 136 20 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 112.14 108.30 3.84 0.30 N 137 20 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 110.21 108.30 1.91 0.30 N 138 20 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.06 108.30 2.76 0.30 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 2 DT A 7 ? ? 0.062 'SIDE CHAIN' 2 3 DT A 7 ? ? 0.069 'SIDE CHAIN' 3 4 DT A 3 ? ? 0.066 'SIDE CHAIN' 4 4 DT A 7 ? ? 0.074 'SIDE CHAIN' 5 4 DG A 8 ? ? 0.056 'SIDE CHAIN' 6 5 DT A 7 ? ? 0.061 'SIDE CHAIN' 7 6 DT A 7 ? ? 0.059 'SIDE CHAIN' 8 7 DT A 7 ? ? 0.064 'SIDE CHAIN' 9 8 DT A 7 ? ? 0.059 'SIDE CHAIN' 10 8 DG A 8 ? ? 0.055 'SIDE CHAIN' 11 12 DT A 7 ? ? 0.059 'SIDE CHAIN' 12 14 DG A 4 ? ? 0.057 'SIDE CHAIN' 13 14 DT A 7 ? ? 0.077 'SIDE CHAIN' 14 15 DG A 8 ? ? 0.055 'SIDE CHAIN' 15 16 DT A 7 ? ? 0.064 'SIDE CHAIN' 16 17 DT A 7 ? ? 0.077 'SIDE CHAIN' 17 19 DT A 7 ? ? 0.061 'SIDE CHAIN' # _ndb_struct_conf_na.entry_id 6M0B _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 A DG 4 1_555 0.632 0.068 0.210 -14.360 12.666 -0.230 1 A_DC1:DG4_A A 1 ? A 4 ? 19 1 1 A DG 8 1_555 A DC 5 1_555 -0.082 0.037 0.111 -6.996 13.251 0.719 2 A_DG8:DC5_A A 8 ? A 5 ? 19 1 # _ndb_struct_na_base_pair_step.model_number 1 _ndb_struct_na_base_pair_step.i_label_asym_id_1 A _ndb_struct_na_base_pair_step.i_label_comp_id_1 DC _ndb_struct_na_base_pair_step.i_label_seq_id_1 1 _ndb_struct_na_base_pair_step.i_symmetry_1 1_555 _ndb_struct_na_base_pair_step.j_label_asym_id_1 A _ndb_struct_na_base_pair_step.j_label_comp_id_1 DG _ndb_struct_na_base_pair_step.j_label_seq_id_1 4 _ndb_struct_na_base_pair_step.j_symmetry_1 1_555 _ndb_struct_na_base_pair_step.i_label_asym_id_2 A _ndb_struct_na_base_pair_step.i_label_comp_id_2 DG _ndb_struct_na_base_pair_step.i_label_seq_id_2 8 _ndb_struct_na_base_pair_step.i_symmetry_2 1_555 _ndb_struct_na_base_pair_step.j_label_asym_id_2 A _ndb_struct_na_base_pair_step.j_label_comp_id_2 DC _ndb_struct_na_base_pair_step.j_label_seq_id_2 5 _ndb_struct_na_base_pair_step.j_symmetry_2 1_555 _ndb_struct_na_base_pair_step.shift 0.056 _ndb_struct_na_base_pair_step.slide 1.094 _ndb_struct_na_base_pair_step.rise 3.293 _ndb_struct_na_base_pair_step.tilt -1.317 _ndb_struct_na_base_pair_step.roll 2.467 _ndb_struct_na_base_pair_step.twist 4.919 _ndb_struct_na_base_pair_step.x_displacement -4.546 _ndb_struct_na_base_pair_step.y_displacement -8.911 _ndb_struct_na_base_pair_step.helical_rise 3.327 _ndb_struct_na_base_pair_step.inclination 26.141 _ndb_struct_na_base_pair_step.tip 13.954 _ndb_struct_na_base_pair_step.helical_twist 5.659 _ndb_struct_na_base_pair_step.step_number 1 _ndb_struct_na_base_pair_step.step_name AA_DC1DG8:DC5DG4_AA _ndb_struct_na_base_pair_step.i_auth_asym_id_1 A _ndb_struct_na_base_pair_step.i_auth_seq_id_1 1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 ? _ndb_struct_na_base_pair_step.j_auth_asym_id_1 A _ndb_struct_na_base_pair_step.j_auth_seq_id_1 4 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 ? _ndb_struct_na_base_pair_step.i_auth_asym_id_2 A _ndb_struct_na_base_pair_step.i_auth_seq_id_2 8 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 ? _ndb_struct_na_base_pair_step.j_auth_asym_id_2 A _ndb_struct_na_base_pair_step.j_auth_seq_id_2 5 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'SODIUM ION' _pdbx_entity_nonpoly.comp_id NA # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #