data_6M0C # _entry.id 6M0C # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.327 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6M0C WWPDB D_1300015760 BMRB 36315 # _pdbx_database_related.db_name BMRB _pdbx_database_related.details ;Solution NMR Structures of DNA minidumbbell formed by 5'-CTTG CATG-3'. ; _pdbx_database_related.db_id 36315 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 6M0C _pdbx_database_status.recvd_initial_deposition_date 2020-02-21 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs REL _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Ngai, C.K.' 1 0000-0003-0088-4961 'Guo, P.' 2 0000-0001-7760-5786 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Phys.Chem.B _citation.journal_id_ASTM JPCBFK _citation.journal_id_CSD 1278 _citation.journal_id_ISSN 1089-5647 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 124 _citation.language ? _citation.page_first 5131 _citation.page_last 5138 _citation.title 'High-Resolution Structures of DNA Minidumbbells Comprising Type II Tetraloops with a Purine Minor Groove Residue.' _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/acs.jpcb.0c03163 _citation.pdbx_database_id_PubMed 32484672 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ngai, C.K.' 1 ? primary 'Lam, S.L.' 2 ? primary 'Lee, H.K.' 3 ? primary 'Guo, P.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*TP*TP*GP*CP*AP*TP*G)-3') ; 2417.603 1 ? ? ? ? 2 non-polymer syn 'SODIUM ION' 22.990 7 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DT)(DT)(DG)(DC)(DA)(DT)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CTTGCATG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DT n 1 3 DT n 1 4 DG n 1 5 DC n 1 6 DA n 1 7 DT n 1 8 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 8 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6M0C _struct_ref.pdbx_db_accession 6M0C _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6M0C _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 8 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 6M0C _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 8 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-1H NOESY' 2 isotropic 2 1 1 '2D DQF-COSY' 2 isotropic 3 1 1 '2D 1H-1H TOCSY' 1 isotropic # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 278 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength '1 NaPi' _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label 'Normal condition' _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents ;0.5 mM DNA (5'-D(*CP*TP*TP*GP*CP*AP*TP*G)-3'), 1 mM sodium phosphate, 0.02 mM DSS, 99.96% D2O ; _pdbx_nmr_sample_details.solvent_system '99.96% D2O' _pdbx_nmr_sample_details.label MDB_A6 _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 AVANCE ? Bruker 500 ? 2 AVANCE ? Bruker 700 ? # _pdbx_nmr_refine.entry_id 6M0C _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 6M0C _pdbx_nmr_ensemble.conformers_calculated_total_number 500 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 6M0C _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 refinement Amber ? 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman' 2 'structure calculation' Amber ? 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman' 3 'chemical shift assignment' TopSpin ? 'Bruker Biospin' # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6M0C _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 6M0C _struct.title ;Solution NMR Structures of DNA minidumbbell formed by 5'-CTTG CATG-3'. ; _struct.pdbx_descriptor ;DNA (5'-D(*CP*TP*TP*GP*CP*AP*TP*G)-3') ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6M0C _struct_keywords.text 'DNA structure, minidumbbell, type II tetraloop, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? A DT 2 OP1 ? ? ? 1_555 D NA . NA ? ? A DT 2 A NA 103 1_555 ? ? ? ? ? ? ? 2.474 ? metalc2 metalc ? ? A DT 2 "O5'" ? ? ? 1_555 D NA . NA ? ? A DT 2 A NA 103 1_555 ? ? ? ? ? ? ? 3.070 ? metalc3 metalc ? ? A DT 2 "O4'" ? ? ? 1_555 D NA . NA ? ? A DT 2 A NA 103 1_555 ? ? ? ? ? ? ? 2.738 ? metalc4 metalc ? ? A DT 2 O2 ? ? ? 1_555 G NA . NA ? ? A DT 2 A NA 106 1_555 ? ? ? ? ? ? ? 2.724 ? metalc5 metalc ? ? A DT 2 O4 ? ? ? 1_555 E NA . NA ? ? A DT 2 A NA 104 1_555 ? ? ? ? ? ? ? 2.671 ? metalc6 metalc ? ? A DT 3 OP2 ? ? ? 1_555 B NA . NA ? ? A DT 3 A NA 101 1_555 ? ? ? ? ? ? ? 2.588 ? metalc7 metalc ? ? A DT 3 "O5'" ? ? ? 1_555 B NA . NA ? ? A DT 3 A NA 101 1_555 ? ? ? ? ? ? ? 2.651 ? metalc8 metalc ? ? A DG 4 OP1 ? ? ? 1_555 B NA . NA ? ? A DG 4 A NA 101 1_555 ? ? ? ? ? ? ? 2.512 ? metalc9 metalc ? ? A DG 4 OP2 ? ? ? 1_555 H NA . NA ? ? A DG 4 A NA 107 1_555 ? ? ? ? ? ? ? 2.456 ? metalc10 metalc ? ? A DC 5 OP1 ? ? ? 1_555 F NA . NA ? ? A DC 5 A NA 105 1_555 ? ? ? ? ? ? ? 2.475 ? metalc11 metalc ? ? A DA 6 OP1 ? ? ? 1_555 G NA . NA ? ? A DA 6 A NA 106 1_555 ? ? ? ? ? ? ? 2.567 ? metalc12 metalc ? ? A DA 6 OP2 ? ? ? 1_555 F NA . NA ? ? A DA 6 A NA 105 1_555 ? ? ? ? ? ? ? 2.503 ? metalc13 metalc ? ? A DT 7 OP1 ? ? ? 1_555 E NA . NA ? ? A DT 7 A NA 104 1_555 ? ? ? ? ? ? ? 2.540 ? metalc14 metalc ? ? A DT 7 OP2 ? ? ? 1_555 C NA . NA ? ? A DT 7 A NA 102 1_555 ? ? ? ? ? ? ? 2.486 ? metalc15 metalc ? ? A DG 8 OP1 ? ? ? 1_555 C NA . NA ? ? A DG 8 A NA 102 1_555 ? ? ? ? ? ? ? 2.499 ? metalc16 metalc ? ? A DG 8 OP1 ? ? ? 1_555 E NA . NA ? ? A DG 8 A NA 104 1_555 ? ? ? ? ? ? ? 2.607 ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 A DG 4 N1 ? ? A DC 1 A DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 A DG 4 O6 ? ? A DC 1 A DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 A DG 4 N2 ? ? A DC 1 A DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 8 N1 ? ? A DC 5 A DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 8 O6 ? ? A DC 5 A DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 8 N2 ? ? A DC 5 A DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A NA 101 ? 2 'binding site for residue NA A 101' AC2 Software A NA 102 ? 2 'binding site for residue NA A 102' AC3 Software A NA 103 ? 2 'binding site for residue NA A 103' AC4 Software A NA 104 ? 3 'binding site for residue NA A 104' AC5 Software A NA 105 ? 2 'binding site for residue NA A 105' AC6 Software A NA 106 ? 2 'binding site for residue NA A 106' AC7 Software A NA 107 ? 1 'binding site for residue NA A 107' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 DT A 3 ? DT A 3 . ? 1_555 ? 2 AC1 2 DG A 4 ? DG A 4 . ? 1_555 ? 3 AC2 2 DT A 7 ? DT A 7 . ? 1_555 ? 4 AC2 2 DG A 8 ? DG A 8 . ? 1_555 ? 5 AC3 2 DT A 2 ? DT A 2 . ? 1_555 ? 6 AC3 2 DA A 6 ? DA A 6 . ? 1_555 ? 7 AC4 3 DT A 2 ? DT A 2 . ? 1_555 ? 8 AC4 3 DT A 7 ? DT A 7 . ? 1_555 ? 9 AC4 3 DG A 8 ? DG A 8 . ? 1_555 ? 10 AC5 2 DC A 5 ? DC A 5 . ? 1_555 ? 11 AC5 2 DA A 6 ? DA A 6 . ? 1_555 ? 12 AC6 2 DT A 2 ? DT A 2 . ? 1_555 ? 13 AC6 2 DA A 6 ? DA A 6 . ? 1_555 ? 14 AC7 1 DG A 4 ? DG A 4 . ? 1_555 ? # _atom_sites.entry_id 6M0C _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N NA O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 DT 2 2 2 DT DT A . n A 1 3 DT 3 3 3 DT DT A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DC 5 5 5 DC DC A . n A 1 6 DA 6 6 6 DA DA A . n A 1 7 DT 7 7 7 DT DT A . n A 1 8 DG 8 8 8 DG DG A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA 1 101 101 NA NA A . C 2 NA 1 102 102 NA NA A . D 2 NA 1 103 103 NA NA A . E 2 NA 1 104 104 NA NA A . F 2 NA 1 105 105 NA NA A . G 2 NA 1 106 106 NA NA A . H 2 NA 1 107 107 NA NA A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 860 ? 1 MORE -71 ? 1 'SSA (A^2)' 1530 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? A DT 2 ? A DT 2 ? 1_555 NA ? D NA . ? A NA 103 ? 1_555 "O5'" ? A DT 2 ? A DT 2 ? 1_555 52.1 ? 2 OP1 ? A DT 2 ? A DT 2 ? 1_555 NA ? D NA . ? A NA 103 ? 1_555 "O4'" ? A DT 2 ? A DT 2 ? 1_555 110.0 ? 3 "O5'" ? A DT 2 ? A DT 2 ? 1_555 NA ? D NA . ? A NA 103 ? 1_555 "O4'" ? A DT 2 ? A DT 2 ? 1_555 58.1 ? 4 O2 ? A DT 2 ? A DT 2 ? 1_555 NA ? G NA . ? A NA 106 ? 1_555 OP1 ? A DA 6 ? A DA 6 ? 1_555 132.2 ? 5 O4 ? A DT 2 ? A DT 2 ? 1_555 NA ? E NA . ? A NA 104 ? 1_555 OP1 ? A DT 7 ? A DT 7 ? 1_555 82.7 ? 6 O4 ? A DT 2 ? A DT 2 ? 1_555 NA ? E NA . ? A NA 104 ? 1_555 OP1 ? A DG 8 ? A DG 8 ? 1_555 127.2 ? 7 OP1 ? A DT 7 ? A DT 7 ? 1_555 NA ? E NA . ? A NA 104 ? 1_555 OP1 ? A DG 8 ? A DG 8 ? 1_555 85.7 ? 8 OP2 ? A DT 3 ? A DT 3 ? 1_555 NA ? B NA . ? A NA 101 ? 1_555 "O5'" ? A DT 3 ? A DT 3 ? 1_555 56.4 ? 9 OP2 ? A DT 3 ? A DT 3 ? 1_555 NA ? B NA . ? A NA 101 ? 1_555 OP1 ? A DG 4 ? A DG 4 ? 1_555 151.1 ? 10 "O5'" ? A DT 3 ? A DT 3 ? 1_555 NA ? B NA . ? A NA 101 ? 1_555 OP1 ? A DG 4 ? A DG 4 ? 1_555 95.3 ? 11 OP1 ? A DC 5 ? A DC 5 ? 1_555 NA ? F NA . ? A NA 105 ? 1_555 OP2 ? A DA 6 ? A DA 6 ? 1_555 118.0 ? 12 OP2 ? A DT 7 ? A DT 7 ? 1_555 NA ? C NA . ? A NA 102 ? 1_555 OP1 ? A DG 8 ? A DG 8 ? 1_555 89.6 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-06-17 2 'Structure model' 1 1 2020-07-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 2 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation.title' # _pdbx_entry_details.entry_id 6M0C _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 ;DNA (5'-D(*CP*TP*TP*GP*CP*AP*TP*G)-3') ; 0.5 ? mM 'natural abundance' 1 'sodium phosphate' 1 ? mM 'natural abundance' 1 DSS 0.02 ? mM 'natural abundance' # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 113.06 108.30 4.76 0.30 N 2 1 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 111.38 108.30 3.08 0.30 N 3 1 "C3'" A DT 2 ? ? "O3'" A DT 2 ? ? P A DT 3 ? ? 127.89 119.70 8.19 1.20 Y 4 1 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 111.67 108.30 3.37 0.30 N 5 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 112.02 108.30 3.72 0.30 N 6 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 115.51 108.30 7.21 0.30 N 7 1 "C3'" A DA 6 ? ? "O3'" A DA 6 ? ? P A DT 7 ? ? 127.96 119.70 8.26 1.20 Y 8 2 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 112.68 108.30 4.38 0.30 N 9 2 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 113.45 108.30 5.15 0.30 N 10 2 "C3'" A DT 2 ? ? "O3'" A DT 2 ? ? P A DT 3 ? ? 130.65 119.70 10.95 1.20 Y 11 2 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.99 108.30 2.69 0.30 N 12 2 "C3'" A DC 5 ? ? "C2'" A DC 5 ? ? "C1'" A DC 5 ? ? 97.42 102.40 -4.98 0.80 N 13 2 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 113.26 108.30 4.96 0.30 N 14 2 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 110.68 108.30 2.38 0.30 N 15 2 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 110.54 108.30 2.24 0.30 N 16 3 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.44 108.30 2.14 0.30 N 17 3 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 112.30 108.30 4.00 0.30 N 18 3 "C3'" A DT 2 ? ? "O3'" A DT 2 ? ? P A DT 3 ? ? 128.15 119.70 8.45 1.20 Y 19 3 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 111.10 108.30 2.80 0.30 N 20 3 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.58 108.30 2.28 0.30 N 21 3 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 113.57 108.30 5.27 0.30 N 22 3 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 111.05 108.30 2.75 0.30 N 23 3 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 110.55 108.30 2.25 0.30 N 24 4 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 111.99 108.30 3.69 0.30 N 25 4 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 112.60 108.30 4.30 0.30 N 26 4 "C3'" A DT 2 ? ? "O3'" A DT 2 ? ? P A DT 3 ? ? 128.11 119.70 8.41 1.20 Y 27 4 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 112.25 108.30 3.95 0.30 N 28 4 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 113.65 108.30 5.35 0.30 N 29 4 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 110.94 108.30 2.64 0.30 N 30 5 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 113.56 108.30 5.26 0.30 N 31 5 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 112.16 108.30 3.86 0.30 N 32 5 "C3'" A DT 2 ? ? "O3'" A DT 2 ? ? P A DT 3 ? ? 126.92 119.70 7.22 1.20 Y 33 5 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 110.15 108.30 1.85 0.30 N 34 5 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.85 108.30 2.55 0.30 N 35 5 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 113.18 108.30 4.88 0.30 N 36 5 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 112.02 108.30 3.72 0.30 N 37 5 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 110.48 108.30 2.18 0.30 N 38 6 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 112.23 108.30 3.93 0.30 N 39 6 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 113.14 108.30 4.84 0.30 N 40 6 "C3'" A DT 2 ? ? "O3'" A DT 2 ? ? P A DT 3 ? ? 128.74 119.70 9.04 1.20 Y 41 6 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 110.70 108.30 2.40 0.30 N 42 6 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 111.64 108.30 3.34 0.30 N 43 6 "C3'" A DC 5 ? ? "C2'" A DC 5 ? ? "C1'" A DC 5 ? ? 97.03 102.40 -5.37 0.80 N 44 6 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 115.08 108.30 6.78 0.30 N 45 6 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 110.69 108.30 2.39 0.30 N 46 6 "C3'" A DA 6 ? ? "O3'" A DA 6 ? ? P A DT 7 ? ? 127.96 119.70 8.26 1.20 Y 47 6 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 110.53 108.30 2.23 0.30 N 48 7 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 112.52 108.30 4.22 0.30 N 49 7 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 112.44 108.30 4.14 0.30 N 50 7 "C3'" A DT 2 ? ? "O3'" A DT 2 ? ? P A DT 3 ? ? 128.47 119.70 8.77 1.20 Y 51 7 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 110.29 108.30 1.99 0.30 N 52 7 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 112.07 108.30 3.77 0.30 N 53 7 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 114.66 108.30 6.36 0.30 N 54 7 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 111.24 108.30 2.94 0.30 N 55 7 "C3'" A DA 6 ? ? "O3'" A DA 6 ? ? P A DT 7 ? ? 127.00 119.70 7.30 1.20 Y 56 8 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 113.50 108.30 5.20 0.30 N 57 8 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 113.32 108.30 5.02 0.30 N 58 8 C6 A DT 2 ? ? C5 A DT 2 ? ? C7 A DT 2 ? ? 119.30 122.90 -3.60 0.60 N 59 8 "C3'" A DT 2 ? ? "O3'" A DT 2 ? ? P A DT 3 ? ? 128.23 119.70 8.53 1.20 Y 60 8 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 111.87 108.30 3.57 0.30 N 61 8 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 112.17 108.30 3.87 0.30 N 62 8 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 114.22 108.30 5.92 0.30 N 63 8 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 110.78 108.30 2.48 0.30 N 64 8 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 110.69 108.30 2.39 0.30 N 65 9 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 111.66 108.30 3.36 0.30 N 66 9 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 112.93 108.30 4.63 0.30 N 67 9 "C3'" A DT 2 ? ? "O3'" A DT 2 ? ? P A DT 3 ? ? 128.07 119.70 8.37 1.20 Y 68 9 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 110.35 108.30 2.05 0.30 N 69 9 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 112.34 108.30 4.04 0.30 N 70 9 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 114.49 108.30 6.19 0.30 N 71 9 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.40 108.30 3.10 0.30 N 72 10 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 112.80 108.30 4.50 0.30 N 73 10 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 112.82 108.30 4.52 0.30 N 74 10 "C3'" A DT 2 ? ? "O3'" A DT 2 ? ? P A DT 3 ? ? 128.22 119.70 8.52 1.20 Y 75 10 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 111.45 108.30 3.15 0.30 N 76 10 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.73 108.30 2.43 0.30 N 77 10 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 115.01 108.30 6.71 0.30 N 78 10 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 110.39 108.30 2.09 0.30 N 79 11 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 111.89 108.30 3.59 0.30 N 80 11 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 112.79 108.30 4.49 0.30 N 81 11 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 111.17 108.30 2.87 0.30 N 82 11 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 113.04 108.30 4.74 0.30 N 83 11 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 110.74 108.30 2.44 0.30 N 84 12 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 112.29 108.30 3.99 0.30 N 85 12 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 113.48 108.30 5.18 0.30 N 86 12 "C3'" A DT 2 ? ? "O3'" A DT 2 ? ? P A DT 3 ? ? 128.13 119.70 8.43 1.20 Y 87 12 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 111.00 108.30 2.70 0.30 N 88 12 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 113.96 108.30 5.66 0.30 N 89 12 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 110.64 108.30 2.34 0.30 N 90 13 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 111.45 108.30 3.15 0.30 N 91 13 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 112.28 108.30 3.98 0.30 N 92 13 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 110.12 108.30 1.82 0.30 N 93 13 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.40 108.30 2.10 0.30 N 94 13 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 113.46 108.30 5.16 0.30 N 95 13 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 110.91 108.30 2.61 0.30 N 96 13 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 110.10 108.30 1.80 0.30 N 97 14 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 111.25 108.30 2.95 0.30 N 98 14 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 112.25 108.30 3.95 0.30 N 99 14 "C3'" A DT 2 ? ? "O3'" A DT 2 ? ? P A DT 3 ? ? 128.45 119.70 8.75 1.20 Y 100 14 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 110.38 108.30 2.08 0.30 N 101 14 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 111.36 108.30 3.06 0.30 N 102 14 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 114.48 108.30 6.18 0.30 N 103 14 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 110.64 108.30 2.34 0.30 N 104 15 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 112.52 108.30 4.22 0.30 N 105 15 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 112.57 108.30 4.27 0.30 N 106 15 "C3'" A DT 2 ? ? "O3'" A DT 2 ? ? P A DT 3 ? ? 128.54 119.70 8.84 1.20 Y 107 15 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 110.66 108.30 2.36 0.30 N 108 15 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 112.14 108.30 3.84 0.30 N 109 15 "C1'" A DC 5 ? ? "O4'" A DC 5 ? ? "C4'" A DC 5 ? ? 103.91 110.10 -6.19 1.00 N 110 15 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 113.71 108.30 5.41 0.30 N 111 15 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 110.22 108.30 1.92 0.30 N 112 15 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.11 108.30 2.81 0.30 N 113 16 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 111.71 108.30 3.41 0.30 N 114 16 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 113.16 108.30 4.86 0.30 N 115 16 "C3'" A DT 2 ? ? "O3'" A DT 2 ? ? P A DT 3 ? ? 127.97 119.70 8.27 1.20 Y 116 16 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 112.75 108.30 4.45 0.30 N 117 16 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.16 108.30 1.86 0.30 N 118 16 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 114.42 108.30 6.12 0.30 N 119 16 "C3'" A DC 5 ? ? "O3'" A DC 5 ? ? P A DA 6 ? ? 126.94 119.70 7.24 1.20 Y 120 16 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 110.20 108.30 1.90 0.30 N 121 16 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 112.00 108.30 3.70 0.30 N 122 17 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 113.03 108.30 4.73 0.30 N 123 17 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 113.71 108.30 5.41 0.30 N 124 17 "C3'" A DT 2 ? ? "O3'" A DT 2 ? ? P A DT 3 ? ? 127.98 119.70 8.28 1.20 Y 125 17 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 110.91 108.30 2.61 0.30 N 126 17 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 111.17 108.30 2.87 0.30 N 127 17 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 113.74 108.30 5.44 0.30 N 128 17 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 111.85 108.30 3.55 0.30 N 129 18 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 112.22 108.30 3.92 0.30 N 130 18 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 111.86 108.30 3.56 0.30 N 131 18 "C3'" A DT 2 ? ? "O3'" A DT 2 ? ? P A DT 3 ? ? 128.53 119.70 8.83 1.20 Y 132 18 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 110.70 108.30 2.40 0.30 N 133 18 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 111.95 108.30 3.65 0.30 N 134 18 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 113.38 108.30 5.08 0.30 N 135 18 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 111.14 108.30 2.84 0.30 N 136 18 "C3'" A DA 6 ? ? "O3'" A DA 6 ? ? P A DT 7 ? ? 127.16 119.70 7.46 1.20 Y 137 19 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 113.17 108.30 4.87 0.30 N 138 19 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 112.38 108.30 4.08 0.30 N 139 19 C6 A DT 2 ? ? C5 A DT 2 ? ? C7 A DT 2 ? ? 119.29 122.90 -3.61 0.60 N 140 19 "C3'" A DT 2 ? ? "O3'" A DT 2 ? ? P A DT 3 ? ? 127.16 119.70 7.46 1.20 Y 141 19 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 111.46 108.30 3.16 0.30 N 142 19 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.51 108.30 2.21 0.30 N 143 19 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 114.31 108.30 6.01 0.30 N 144 19 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 110.30 108.30 2.00 0.30 N 145 20 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 112.22 108.30 3.92 0.30 N 146 20 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 112.79 108.30 4.49 0.30 N 147 20 "C3'" A DT 2 ? ? "O3'" A DT 2 ? ? P A DT 3 ? ? 128.23 119.70 8.53 1.20 Y 148 20 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 110.17 108.30 1.87 0.30 N 149 20 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 111.60 108.30 3.30 0.30 N 150 20 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 112.48 108.30 4.18 0.30 N 151 20 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 110.34 108.30 2.04 0.30 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DT A 2 ? ? 0.065 'SIDE CHAIN' 2 3 DA A 6 ? ? 0.062 'SIDE CHAIN' 3 4 DC A 1 ? ? 0.060 'SIDE CHAIN' 4 4 DT A 2 ? ? 0.061 'SIDE CHAIN' 5 5 DA A 6 ? ? 0.089 'SIDE CHAIN' 6 9 DT A 2 ? ? 0.105 'SIDE CHAIN' 7 10 DT A 2 ? ? 0.055 'SIDE CHAIN' 8 11 DC A 1 ? ? 0.061 'SIDE CHAIN' 9 11 DT A 2 ? ? 0.104 'SIDE CHAIN' 10 11 DA A 6 ? ? 0.054 'SIDE CHAIN' 11 13 DT A 2 ? ? 0.078 'SIDE CHAIN' 12 14 DT A 2 ? ? 0.059 'SIDE CHAIN' 13 16 DT A 2 ? ? 0.102 'SIDE CHAIN' # _ndb_struct_conf_na.entry_id 6M0C _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 A DG 4 1_555 0.227 0.080 -0.040 -4.493 1.060 -0.153 1 A_DC1:DG4_A A 1 ? A 4 ? 19 1 1 A DG 8 1_555 A DC 5 1_555 -0.180 -0.047 -0.589 0.020 17.134 -4.646 2 A_DG8:DC5_A A 8 ? A 5 ? 19 1 # _ndb_struct_na_base_pair_step.model_number 1 _ndb_struct_na_base_pair_step.i_label_asym_id_1 A _ndb_struct_na_base_pair_step.i_label_comp_id_1 DC _ndb_struct_na_base_pair_step.i_label_seq_id_1 1 _ndb_struct_na_base_pair_step.i_symmetry_1 1_555 _ndb_struct_na_base_pair_step.j_label_asym_id_1 A _ndb_struct_na_base_pair_step.j_label_comp_id_1 DG _ndb_struct_na_base_pair_step.j_label_seq_id_1 4 _ndb_struct_na_base_pair_step.j_symmetry_1 1_555 _ndb_struct_na_base_pair_step.i_label_asym_id_2 A _ndb_struct_na_base_pair_step.i_label_comp_id_2 DG _ndb_struct_na_base_pair_step.i_label_seq_id_2 8 _ndb_struct_na_base_pair_step.i_symmetry_2 1_555 _ndb_struct_na_base_pair_step.j_label_asym_id_2 A _ndb_struct_na_base_pair_step.j_label_comp_id_2 DC _ndb_struct_na_base_pair_step.j_label_seq_id_2 5 _ndb_struct_na_base_pair_step.j_symmetry_2 1_555 _ndb_struct_na_base_pair_step.shift -0.683 _ndb_struct_na_base_pair_step.slide 0.615 _ndb_struct_na_base_pair_step.rise 3.478 _ndb_struct_na_base_pair_step.tilt 5.828 _ndb_struct_na_base_pair_step.roll 1.969 _ndb_struct_na_base_pair_step.twist 9.706 _ndb_struct_na_base_pair_step.x_displacement 0.214 _ndb_struct_na_base_pair_step.y_displacement 11.877 _ndb_struct_na_base_pair_step.helical_rise 2.700 _ndb_struct_na_base_pair_step.inclination 10.376 _ndb_struct_na_base_pair_step.tip -30.715 _ndb_struct_na_base_pair_step.helical_twist 11.487 _ndb_struct_na_base_pair_step.step_number 1 _ndb_struct_na_base_pair_step.step_name AA_DC1DG8:DC5DG4_AA _ndb_struct_na_base_pair_step.i_auth_asym_id_1 A _ndb_struct_na_base_pair_step.i_auth_seq_id_1 1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 ? _ndb_struct_na_base_pair_step.j_auth_asym_id_1 A _ndb_struct_na_base_pair_step.j_auth_seq_id_1 4 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 ? _ndb_struct_na_base_pair_step.i_auth_asym_id_2 A _ndb_struct_na_base_pair_step.i_auth_seq_id_2 8 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 ? _ndb_struct_na_base_pair_step.j_auth_asym_id_2 A _ndb_struct_na_base_pair_step.j_auth_seq_id_2 5 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'SODIUM ION' _pdbx_entity_nonpoly.comp_id NA # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #