HEADER HYDROLASE/DNA/RNA 23-FEB-20 6M0W TITLE CRYSTAL STRUCTURE OF STREPTOCOCCUS THERMOPHILUS CAS9 IN COMPLEX WITH TITLE 2 THE AGAA PAM COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (72-MER); COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (28-MER); COMPND 7 CHAIN: C; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DNA (5'-D(*AP*AP*AP*GP*AP*AP*GP*C)-3'); COMPND 11 CHAIN: D; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 4; COMPND 14 MOLECULE: CRISPR-ASSOCIATED ENDONUCLEASE CAS9 1; COMPND 15 CHAIN: A; COMPND 16 SYNONYM: CAS9**; COMPND 17 EC: 3.1.-.-; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: STREPTOCOCCUS THERMOPHILUS; SOURCE 4 ORGANISM_TAXID: 1308; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: STREPTOCOCCUS THERMOPHILUS; SOURCE 8 ORGANISM_TAXID: 1308; SOURCE 9 MOL_ID: 3; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: STREPTOCOCCUS THERMOPHILUS; SOURCE 12 ORGANISM_TAXID: 1308; SOURCE 13 MOL_ID: 4; SOURCE 14 ORGANISM_SCIENTIFIC: STREPTOCOCCUS THERMOPHILUS LMD-9; SOURCE 15 ORGANISM_TAXID: 322159; SOURCE 16 STRAIN: LMD-9; SOURCE 17 GENE: CAS9-1, CSN1, STER_0709; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CRISPR, HYDROLASE-DNA-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.ZHANG,H.ZHANG,X.XU,Y.WANG,W.CHEN,Y.WANG,Z.WU,N.TANG,Y.WANG,S.ZHAO, AUTHOR 2 J.GAN,Q.JI REVDAT 2 29-NOV-23 6M0W 1 REMARK REVDAT 1 09-SEP-20 6M0W 0 JRNL AUTH Y.ZHANG,H.ZHANG,X.XU,Y.WANG,W.CHEN,Y.WANG,Z.WU,N.TANG, JRNL AUTH 2 Y.WANG,S.ZHAO,J.GAN,Q.JI JRNL TITL CATALYTIC-STATE STRUCTURE AND ENGINEERING OF STREPTOCOCCUS JRNL TITL 2 THERMOPHILUS CAS9 JRNL REF NAT CATAL 2020 JRNL REFN ESSN 2520-1158 JRNL DOI 10.1038/S41929-020-00506-9 REMARK 2 REMARK 2 RESOLUTION. 2.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 43301 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 2200 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.8740 - 6.9363 1.00 2686 138 0.1906 0.2156 REMARK 3 2 6.9363 - 5.5080 1.00 2614 148 0.2034 0.2396 REMARK 3 3 5.5080 - 4.8124 1.00 2616 164 0.1867 0.1954 REMARK 3 4 4.8124 - 4.3727 1.00 2592 131 0.1781 0.2323 REMARK 3 5 4.3727 - 4.0595 1.00 2627 129 0.1946 0.2537 REMARK 3 6 4.0595 - 3.8202 1.00 2584 126 0.2008 0.2842 REMARK 3 7 3.8202 - 3.6290 1.00 2617 129 0.2112 0.2632 REMARK 3 8 3.6290 - 3.4711 1.00 2580 136 0.2290 0.2843 REMARK 3 9 3.4711 - 3.3375 1.00 2569 125 0.2483 0.2666 REMARK 3 10 3.3375 - 3.2223 1.00 2575 139 0.2470 0.2903 REMARK 3 11 3.2223 - 3.1216 1.00 2559 145 0.2661 0.2998 REMARK 3 12 3.1216 - 3.0324 1.00 2572 147 0.2791 0.3389 REMARK 3 13 3.0324 - 2.9526 1.00 2565 149 0.2947 0.3516 REMARK 3 14 2.9526 - 2.8805 0.98 2532 145 0.3225 0.3581 REMARK 3 15 2.8805 - 2.8151 0.97 2474 122 0.3429 0.3650 REMARK 3 16 2.8151 - 2.7600 0.90 2339 127 0.3464 0.3421 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.370 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 57.19 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 10906 REMARK 3 ANGLE : 0.817 15205 REMARK 3 CHIRALITY : 0.044 1743 REMARK 3 PLANARITY : 0.004 1571 REMARK 3 DIHEDRAL : 19.714 6310 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 35.5379 12.3075 146.1941 REMARK 3 T TENSOR REMARK 3 T11: 0.4811 T22: 0.4398 REMARK 3 T33: 0.4994 T12: 0.0459 REMARK 3 T13: 0.0237 T23: -0.0374 REMARK 3 L TENSOR REMARK 3 L11: 0.9373 L22: 0.5444 REMARK 3 L33: 1.3838 L12: 0.1888 REMARK 3 L13: 0.4948 L23: -0.0111 REMARK 3 S TENSOR REMARK 3 S11: -0.0072 S12: 0.0282 S13: -0.0814 REMARK 3 S21: -0.0599 S22: 0.0542 S23: 0.0662 REMARK 3 S31: -0.0045 S32: -0.1755 S33: 0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6M0W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1300015805. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-FEB-19 REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43335 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.755 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.10900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.71200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5AXW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: KCL, MGCL, BACL2, MBP, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 160.85400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.66650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 160.85400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 37.66650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 22190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 55250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -216.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, D, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 121 REMARK 465 ASP A 122 REMARK 465 ASP A 123 REMARK 465 ALA A 124 REMARK 465 SER A 125 REMARK 465 ASP A 126 REMARK 465 ASP A 127 REMARK 465 GLY A 128 REMARK 465 ASN A 129 REMARK 465 SER A 130 REMARK 465 SER A 131 REMARK 465 VAL A 132 REMARK 465 GLY A 133 REMARK 465 ASP A 134 REMARK 465 TYR A 135 REMARK 465 ALA A 136 REMARK 465 GLN A 137 REMARK 465 ILE A 138 REMARK 465 VAL A 139 REMARK 465 LYS A 140 REMARK 465 GLU A 141 REMARK 465 ASN A 142 REMARK 465 SER A 143 REMARK 465 LYS A 144 REMARK 465 GLN A 145 REMARK 465 LEU A 146 REMARK 465 GLU A 147 REMARK 465 THR A 148 REMARK 465 SER A 328 REMARK 465 CYS A 329 REMARK 465 LYS A 455 REMARK 465 GLN A 456 REMARK 465 LYS A 457 REMARK 465 THR A 458 REMARK 465 THR A 459 REMARK 465 SER A 460 REMARK 465 SER A 461 REMARK 465 SER A 462 REMARK 465 ASN A 463 REMARK 465 LYS A 464 REMARK 465 THR A 465 REMARK 465 LYS A 466 REMARK 465 ARG A 676 REMARK 465 LYS A 677 REMARK 465 LYS A 678 REMARK 465 PHE A 679 REMARK 465 TRP A 754 REMARK 465 LYS A 755 REMARK 465 LYS A 756 REMARK 465 GLN A 757 REMARK 465 LYS A 758 REMARK 465 ASN A 759 REMARK 465 THR A 760 REMARK 465 LEU A 761 REMARK 465 VAL A 762 REMARK 465 SER A 763 REMARK 465 TYR A 764 REMARK 465 SER A 765 REMARK 465 GLU A 766 REMARK 465 ASP A 767 REMARK 465 GLN A 768 REMARK 465 LEU A 769 REMARK 465 LEU A 770 REMARK 465 ASP A 771 REMARK 465 ILE A 772 REMARK 465 GLU A 773 REMARK 465 THR A 774 REMARK 465 GLY A 775 REMARK 465 GLU A 776 REMARK 465 LEU A 777 REMARK 465 ILE A 778 REMARK 465 SER A 779 REMARK 465 ASP A 780 REMARK 465 ASP A 781 REMARK 465 GLU A 782 REMARK 465 TYR A 783 REMARK 465 LYS A 784 REMARK 465 GLU A 785 REMARK 465 SER A 786 REMARK 465 VAL A 787 REMARK 465 PHE A 788 REMARK 465 LYS A 789 REMARK 465 GLN A 897 REMARK 465 ILE A 898 REMARK 465 ASN A 899 REMARK 465 GLU A 900 REMARK 465 LYS A 901 REMARK 465 GLY A 902 REMARK 465 LYS A 903 REMARK 465 GLU A 904 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 A B 70 C5' C4' O4' C3' O3' C2' O2' REMARK 470 A B 70 C1' N9 C8 N7 C5 C6 N6 REMARK 470 A B 70 N1 C2 N3 C4 REMARK 470 MET A 0 CG SD CE REMARK 470 LYS A 30 CG CD CE NZ REMARK 470 GLU A 172 CG CD OE1 OE2 REMARK 470 LYS A 173 CG CD CE NZ REMARK 470 HIS A 178 CG ND1 CD2 CE1 NE2 REMARK 470 TYR A 262 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 292 CG CD OE1 OE2 REMARK 470 LYS A 294 CG CD CE NZ REMARK 470 LYS A 295 CG CD CE NZ REMARK 470 LYS A 321 CG CD CE NZ REMARK 470 LYS A 325 CG CD CE NZ REMARK 470 LEU A 326 CG CD1 CD2 REMARK 470 LEU A 327 CG CD1 CD2 REMARK 470 ASP A 333 CG OD1 OD2 REMARK 470 LYS A 335 CG CD CE NZ REMARK 470 LYS A 344 CG CD CE NZ REMARK 470 LYS A 357 CG CD CE NZ REMARK 470 ILE A 364 CG1 CG2 CD1 REMARK 470 LYS A 422 CG CD CE NZ REMARK 470 GLU A 519 CG CD OE1 OE2 REMARK 470 LYS A 548 CG CD CE NZ REMARK 470 VAL A 675 CG1 CG2 REMARK 470 LYS A 706 CG CD CE NZ REMARK 470 LYS A 710 CG CD CE NZ REMARK 470 ARG A 723 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 724 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 725 CG ND1 CD2 CE1 NE2 REMARK 470 TRP A 726 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 726 CZ3 CH2 REMARK 470 ILE A 728 CG1 CG2 CD1 REMARK 470 GLU A 729 CG CD OE1 OE2 REMARK 470 LYS A 730 CG CD CE NZ REMARK 470 GLN A 750 CG CD OE1 NE2 REMARK 470 ASN A 752 CG OD1 ND2 REMARK 470 GLN A 793 CG CD OE1 NE2 REMARK 470 LYS A 800 CG CD CE NZ REMARK 470 LYS A 850 CG CD CE NZ REMARK 470 LYS A 896 CG CD CE NZ REMARK 470 LYS A 926 CG CD CE NZ REMARK 470 LYS A1032 CG CD CE NZ REMARK 470 LYS A1037 CG CD CE NZ REMARK 470 SER A1095 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 2 -166.35 -114.70 REMARK 500 PHE A 35 81.08 -153.82 REMARK 500 PHE A 79 36.89 -96.56 REMARK 500 THR A 97 -34.53 -132.09 REMARK 500 SER A 119 35.63 -146.60 REMARK 500 ASN A 182 47.82 -85.17 REMARK 500 LYS A 294 -4.01 66.30 REMARK 500 LYS A 344 95.15 -68.52 REMARK 500 ALA A 345 152.24 -41.97 REMARK 500 ASP A 368 -167.04 -78.45 REMARK 500 ASN A 416 38.69 -140.29 REMARK 500 TYR A 478 76.16 -105.39 REMARK 500 ASN A 479 85.29 -165.29 REMARK 500 HIS A 559 59.41 -146.49 REMARK 500 GLN A 594 -2.67 -58.46 REMARK 500 TRP A 641 -176.88 -56.49 REMARK 500 GLU A 667 41.93 -82.79 REMARK 500 ASP A 669 49.65 -78.24 REMARK 500 PHE A 673 59.05 -113.13 REMARK 500 TRP A 726 -166.00 -78.32 REMARK 500 GLN A 750 26.86 -77.35 REMARK 500 ASP A 868 95.69 -168.22 REMARK 500 ASP A 878 63.56 -150.14 REMARK 500 PRO A 894 -72.26 -38.51 REMARK 500 GLU A 916 -78.02 -78.99 REMARK 500 ASP A 939 -77.42 -102.84 REMARK 500 ASP A1006 -70.39 -60.42 REMARK 500 ASP A1016 41.33 -102.98 REMARK 500 LYS A1020 -60.59 -140.32 REMARK 500 LEU A1045 -63.22 -108.13 REMARK 500 MET A1049 77.24 59.80 REMARK 500 ASN A1093 71.63 -107.24 REMARK 500 VAL A1103 1.34 -66.98 REMARK 500 LEU A1119 45.45 -141.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC C 11 O3' REMARK 620 2 DC C 12 OP1 60.6 REMARK 620 3 ASP A 598 OD1 143.2 93.3 REMARK 620 4 ASN A 622 OD1 84.9 87.0 67.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1203 DBREF 6M0W B -1 70 PDB 6M0W 6M0W -1 70 DBREF 6M0W C 1 28 PDB 6M0W 6M0W 1 28 DBREF 6M0W D 1 8 PDB 6M0W 6M0W 1 8 DBREF 6M0W A 2 1121 UNP Q03LF7 CAS9A_STRTD 2 1121 SEQADV 6M0W MET A 0 UNP Q03LF7 INITIATING METHIONINE SEQADV 6M0W GLY A 1 UNP Q03LF7 EXPRESSION TAG SEQADV 6M0W ALA A 599 UNP Q03LF7 HIS 599 ENGINEERED MUTATION SEQRES 1 B 72 G G G U G C U A A G A U U SEQRES 2 B 72 A A U C A G G A U G U U U SEQRES 3 B 72 U U G U A C U C G A A A G SEQRES 4 B 72 A A G C U A C A A A G A U SEQRES 5 B 72 A A G G C U U C A U G C C SEQRES 6 B 72 G A A A U C A SEQRES 1 C 28 DG DC DT DT DC DT DT DT DA DT DC DC DT SEQRES 2 C 28 DG DA DT DT DA DA DT DC DT DT DA DG DC SEQRES 3 C 28 DA DC SEQRES 1 D 8 DA DA DA DG DA DA DG DC SEQRES 1 A 1122 MET GLY SER ASP LEU VAL LEU GLY LEU ASP ILE GLY ILE SEQRES 2 A 1122 GLY SER VAL GLY VAL GLY ILE LEU ASN LYS VAL THR GLY SEQRES 3 A 1122 GLU ILE ILE HIS LYS ASN SER ARG ILE PHE PRO ALA ALA SEQRES 4 A 1122 GLN ALA GLU ASN ASN LEU VAL ARG ARG THR ASN ARG GLN SEQRES 5 A 1122 GLY ARG ARG LEU ALA ARG ARG LYS LYS HIS ARG ARG VAL SEQRES 6 A 1122 ARG LEU ASN ARG LEU PHE GLU GLU SER GLY LEU ILE THR SEQRES 7 A 1122 ASP PHE THR LYS ILE SER ILE ASN LEU ASN PRO TYR GLN SEQRES 8 A 1122 LEU ARG VAL LYS GLY LEU THR ASP GLU LEU SER ASN GLU SEQRES 9 A 1122 GLU LEU PHE ILE ALA LEU LYS ASN MET VAL LYS HIS ARG SEQRES 10 A 1122 GLY ILE SER TYR LEU ASP ASP ALA SER ASP ASP GLY ASN SEQRES 11 A 1122 SER SER VAL GLY ASP TYR ALA GLN ILE VAL LYS GLU ASN SEQRES 12 A 1122 SER LYS GLN LEU GLU THR LYS THR PRO GLY GLN ILE GLN SEQRES 13 A 1122 LEU GLU ARG TYR GLN THR TYR GLY GLN LEU ARG GLY ASP SEQRES 14 A 1122 PHE THR VAL GLU LYS ASP GLY LYS LYS HIS ARG LEU ILE SEQRES 15 A 1122 ASN VAL PHE PRO THR SER ALA TYR ARG SER GLU ALA LEU SEQRES 16 A 1122 ARG ILE LEU GLN THR GLN GLN GLU PHE ASN PRO GLN ILE SEQRES 17 A 1122 THR ASP GLU PHE ILE ASN ARG TYR LEU GLU ILE LEU THR SEQRES 18 A 1122 GLY LYS ARG LYS TYR TYR HIS GLY PRO GLY ASN GLU LYS SEQRES 19 A 1122 SER ARG THR ASP TYR GLY ARG TYR ARG THR SER GLY GLU SEQRES 20 A 1122 THR LEU ASP ASN ILE PHE GLY ILE LEU ILE GLY LYS CYS SEQRES 21 A 1122 THR PHE TYR PRO ASP GLU PHE ARG ALA ALA LYS ALA SER SEQRES 22 A 1122 TYR THR ALA GLN GLU PHE ASN LEU LEU ASN ASP LEU ASN SEQRES 23 A 1122 ASN LEU THR VAL PRO THR GLU THR LYS LYS LEU SER LYS SEQRES 24 A 1122 GLU GLN LYS ASN GLN ILE ILE ASN TYR VAL LYS ASN GLU SEQRES 25 A 1122 LYS ALA MET GLY PRO ALA LYS LEU PHE LYS TYR ILE ALA SEQRES 26 A 1122 LYS LEU LEU SER CYS ASP VAL ALA ASP ILE LYS GLY TYR SEQRES 27 A 1122 ARG ILE ASP LYS SER GLY LYS ALA GLU ILE HIS THR PHE SEQRES 28 A 1122 GLU ALA TYR ARG LYS MET LYS THR LEU GLU THR LEU ASP SEQRES 29 A 1122 ILE GLU GLN MET ASP ARG GLU THR LEU ASP LYS LEU ALA SEQRES 30 A 1122 TYR VAL LEU THR LEU ASN THR GLU ARG GLU GLY ILE GLN SEQRES 31 A 1122 GLU ALA LEU GLU HIS GLU PHE ALA ASP GLY SER PHE SER SEQRES 32 A 1122 GLN LYS GLN VAL ASP GLU LEU VAL GLN PHE ARG LYS ALA SEQRES 33 A 1122 ASN SER SER ILE PHE GLY LYS GLY TRP HIS ASN PHE SER SEQRES 34 A 1122 VAL LYS LEU MET MET GLU LEU ILE PRO GLU LEU TYR GLU SEQRES 35 A 1122 THR SER GLU GLU GLN MET THR ILE LEU THR ARG LEU GLY SEQRES 36 A 1122 LYS GLN LYS THR THR SER SER SER ASN LYS THR LYS TYR SEQRES 37 A 1122 ILE ASP GLU LYS LEU LEU THR GLU GLU ILE TYR ASN PRO SEQRES 38 A 1122 VAL VAL ALA LYS SER VAL ARG GLN ALA ILE LYS ILE VAL SEQRES 39 A 1122 ASN ALA ALA ILE LYS GLU TYR GLY ASP PHE ASP ASN ILE SEQRES 40 A 1122 VAL ILE GLU MET ALA ARG GLU THR ASN GLU ASP ASP GLU SEQRES 41 A 1122 LYS LYS ALA ILE GLN LYS ILE GLN LYS ALA ASN LYS ASP SEQRES 42 A 1122 GLU LYS ASP ALA ALA MET LEU LYS ALA ALA ASN GLN TYR SEQRES 43 A 1122 ASN GLY LYS ALA GLU LEU PRO HIS SER VAL PHE HIS GLY SEQRES 44 A 1122 HIS LYS GLN LEU ALA THR LYS ILE ARG LEU TRP HIS GLN SEQRES 45 A 1122 GLN GLY GLU ARG CYS LEU TYR THR GLY LYS THR ILE SER SEQRES 46 A 1122 ILE HIS ASP LEU ILE ASN ASN SER ASN GLN PHE GLU VAL SEQRES 47 A 1122 ASP ALA ILE LEU PRO LEU SER ILE THR PHE ASP ASP SER SEQRES 48 A 1122 LEU ALA ASN LYS VAL LEU VAL TYR ALA THR ALA ASN GLN SEQRES 49 A 1122 GLU LYS GLY GLN ARG THR PRO TYR GLN ALA LEU ASP SER SEQRES 50 A 1122 MET ASP ASP ALA TRP SER PHE ARG GLU LEU LYS ALA PHE SEQRES 51 A 1122 VAL ARG GLU SER LYS THR LEU SER ASN LYS LYS LYS GLU SEQRES 52 A 1122 TYR LEU LEU THR GLU GLU ASP ILE SER LYS PHE ASP VAL SEQRES 53 A 1122 ARG LYS LYS PHE ILE GLU ARG ASN LEU VAL ASP THR ARG SEQRES 54 A 1122 TYR ALA SER ARG VAL VAL LEU ASN ALA LEU GLN GLU HIS SEQRES 55 A 1122 PHE ARG ALA HIS LYS ILE ASP THR LYS VAL SER VAL VAL SEQRES 56 A 1122 ARG GLY GLN PHE THR SER GLN LEU ARG ARG HIS TRP GLY SEQRES 57 A 1122 ILE GLU LYS THR ARG ASP THR TYR HIS HIS HIS ALA VAL SEQRES 58 A 1122 ASP ALA LEU ILE ILE ALA ALA SER SER GLN LEU ASN LEU SEQRES 59 A 1122 TRP LYS LYS GLN LYS ASN THR LEU VAL SER TYR SER GLU SEQRES 60 A 1122 ASP GLN LEU LEU ASP ILE GLU THR GLY GLU LEU ILE SER SEQRES 61 A 1122 ASP ASP GLU TYR LYS GLU SER VAL PHE LYS ALA PRO TYR SEQRES 62 A 1122 GLN HIS PHE VAL ASP THR LEU LYS SER LYS GLU PHE GLU SEQRES 63 A 1122 ASP SER ILE LEU PHE SER TYR GLN VAL ASP SER LYS PHE SEQRES 64 A 1122 ASN ARG LYS ILE SER ASP ALA THR ILE TYR ALA THR ARG SEQRES 65 A 1122 GLN ALA LYS VAL GLY LYS ASP LYS ALA ASP GLU THR TYR SEQRES 66 A 1122 VAL LEU GLY LYS ILE LYS ASP ILE TYR THR GLN ASP GLY SEQRES 67 A 1122 TYR ASP ALA PHE MET LYS ILE TYR LYS LYS ASP LYS SER SEQRES 68 A 1122 LYS PHE LEU MET TYR ARG HIS ASP PRO GLN THR PHE GLU SEQRES 69 A 1122 LYS VAL ILE GLU PRO ILE LEU GLU ASN TYR PRO ASN LYS SEQRES 70 A 1122 GLN ILE ASN GLU LYS GLY LYS GLU VAL PRO CYS ASN PRO SEQRES 71 A 1122 PHE LEU LYS TYR LYS GLU GLU HIS GLY TYR ILE ARG LYS SEQRES 72 A 1122 TYR SER LYS LYS GLY ASN GLY PRO GLU ILE LYS SER LEU SEQRES 73 A 1122 LYS TYR TYR ASP SER LYS LEU GLY ASN HIS ILE ASP ILE SEQRES 74 A 1122 THR PRO LYS ASP SER ASN ASN LYS VAL VAL LEU GLN SER SEQRES 75 A 1122 VAL SER PRO TRP ARG ALA ASP VAL TYR PHE ASN LYS THR SEQRES 76 A 1122 THR GLY LYS TYR GLU ILE LEU GLY LEU LYS TYR ALA ASP SEQRES 77 A 1122 LEU GLN PHE GLU LYS GLY THR GLY THR TYR LYS ILE SER SEQRES 78 A 1122 GLN GLU LYS TYR ASN ASP ILE LYS LYS LYS GLU GLY VAL SEQRES 79 A 1122 ASP SER ASP SER GLU PHE LYS PHE THR LEU TYR LYS ASN SEQRES 80 A 1122 ASP LEU LEU LEU VAL LYS ASP THR GLU THR LYS GLU GLN SEQRES 81 A 1122 GLN LEU PHE ARG PHE LEU SER ARG THR MET PRO LYS GLN SEQRES 82 A 1122 LYS HIS TYR VAL GLU LEU LYS PRO TYR ASP LYS GLN LYS SEQRES 83 A 1122 PHE GLU GLY GLY GLU ALA LEU ILE LYS VAL LEU GLY ASN SEQRES 84 A 1122 VAL ALA ASN SER GLY GLN CYS LYS LYS GLY LEU GLY LYS SEQRES 85 A 1122 SER ASN ILE SER ILE TYR LYS VAL ARG THR ASP VAL LEU SEQRES 86 A 1122 GLY ASN GLN HIS ILE ILE LYS ASN GLU GLY ASP LYS PRO SEQRES 87 A 1122 LYS LEU ASP PHE HET MG B 101 1 HET MG D 101 1 HET MG A1201 1 HET MG A1202 1 HET MG A1203 1 HETNAM MG MAGNESIUM ION FORMUL 5 MG 5(MG 2+) FORMUL 10 HOH *19(H2 O) HELIX 1 AA1 PRO A 36 GLU A 41 5 6 HELIX 2 AA2 ASN A 42 SER A 73 1 32 HELIX 3 AA3 ASN A 87 GLY A 95 1 9 HELIX 4 AA4 SER A 101 HIS A 115 1 15 HELIX 5 AA5 THR A 150 GLY A 163 1 14 HELIX 6 AA6 PRO A 185 ASN A 204 1 20 HELIX 7 AA7 THR A 208 GLY A 221 1 14 HELIX 8 AA8 PHE A 252 ILE A 256 5 5 HELIX 9 AA9 SER A 272 ASN A 285 1 14 HELIX 10 AB1 SER A 297 GLU A 311 1 15 HELIX 11 AB2 GLY A 315 ALA A 324 1 10 HELIX 12 AB3 ASP A 330 ILE A 334 5 5 HELIX 13 AB4 PHE A 350 LYS A 357 1 8 HELIX 14 AB5 ASP A 368 ASN A 382 1 15 HELIX 15 AB6 GLU A 384 PHE A 396 1 13 HELIX 16 AB7 SER A 402 ALA A 415 1 14 HELIX 17 AB8 ASN A 416 GLY A 421 1 6 HELIX 18 AB9 SER A 428 SER A 443 1 16 HELIX 19 AC1 GLU A 445 GLY A 454 1 10 HELIX 20 AC2 ASP A 469 THR A 474 1 6 HELIX 21 AC3 ASN A 479 GLY A 501 1 23 HELIX 22 AC4 GLU A 516 ASN A 546 1 31 HELIX 23 AC5 PRO A 552 HIS A 557 5 6 HELIX 24 AC6 GLN A 561 GLN A 572 1 12 HELIX 25 AC7 SER A 584 ASN A 591 1 8 HELIX 26 AC8 PRO A 602 PHE A 607 1 6 HELIX 27 AC9 SER A 610 ALA A 612 5 3 HELIX 28 AD1 ALA A 619 GLY A 626 1 8 HELIX 29 AD2 THR A 629 LEU A 634 1 6 HELIX 30 AD3 SER A 642 SER A 653 1 12 HELIX 31 AD4 SER A 657 THR A 666 1 10 HELIX 32 AD5 GLU A 681 HIS A 705 1 25 HELIX 33 AD6 GLY A 716 TRP A 726 1 11 HELIX 34 AD7 TYR A 735 GLN A 750 1 16 HELIX 35 AD8 LEU A 751 LEU A 753 5 3 HELIX 36 AD9 PRO A 791 LYS A 800 1 10 HELIX 37 AE1 SER A 801 ASP A 806 1 6 HELIX 38 AE2 THR A 854 LYS A 869 1 16 HELIX 39 AE3 PHE A 872 ASP A 878 1 7 HELIX 40 AE4 ASP A 878 VAL A 885 1 8 HELIX 41 AE5 VAL A 885 TYR A 893 1 9 HELIX 42 AE6 ASN A 908 GLY A 918 1 11 HELIX 43 AE7 ALA A 986 LEU A 988 5 3 HELIX 44 AE8 SER A 1000 GLU A 1011 1 12 SHEET 1 AA1 6 LYS A 710 ARG A 715 0 SHEET 2 AA1 6 ASN A 505 MET A 510 1 N MET A 510 O VAL A 714 SHEET 3 AA1 6 LEU A 4 ILE A 10 1 N LEU A 6 O VAL A 507 SHEET 4 AA1 6 SER A 14 ASN A 21 -1 O GLY A 16 N ASP A 9 SHEET 5 AA1 6 ILE A 27 ILE A 34 -1 O HIS A 29 N ILE A 19 SHEET 6 AA1 6 LEU A 809 TYR A 812 1 O SER A 811 N ILE A 34 SHEET 1 AA2 2 ASP A 168 LYS A 173 0 SHEET 2 AA2 2 LYS A 176 ILE A 181 -1 O LYS A 176 N LYS A 173 SHEET 1 AA3 2 PHE A 595 ALA A 599 0 SHEET 2 AA3 2 LYS A 614 TYR A 618 -1 O VAL A 617 N GLU A 596 SHEET 1 AA4 5 LEU A 935 LYS A 941 0 SHEET 2 AA4 5 GLU A 842 ILE A 849 -1 N VAL A 845 O SER A 940 SHEET 3 AA4 5 TYR A 828 ALA A 833 -1 N ARG A 831 O TYR A 844 SHEET 4 AA4 5 VAL A 957 LEU A 959 -1 O VAL A 958 N TYR A 828 SHEET 5 AA4 5 ILE A 946 ASP A 947 -1 N ILE A 946 O LEU A 959 SHEET 1 AA5 3 TYR A 978 LYS A 984 0 SHEET 2 AA5 3 PRO A 964 PHE A 971 -1 N ASP A 968 O LEU A 981 SHEET 3 AA5 3 GLU A1018 TYR A1024 -1 O LEU A1023 N ALA A 967 SHEET 1 AA6 2 GLN A 989 PHE A 990 0 SHEET 2 AA6 2 TYR A 997 LYS A 998 -1 O LYS A 998 N GLN A 989 SHEET 1 AA7 6 CYS A1085 GLY A1088 0 SHEET 2 AA7 6 TYR A1055 LYS A1059 -1 N VAL A1056 O LYS A1087 SHEET 3 AA7 6 GLN A1039 ARG A1047 -1 N ARG A1043 O LYS A1059 SHEET 4 AA7 6 LEU A1028 ASP A1033 -1 N VAL A1031 O GLN A1040 SHEET 5 AA7 6 ILE A1094 THR A1101 -1 O SER A1095 N LYS A1032 SHEET 6 AA7 6 GLN A1107 ILE A1110 -1 O ILE A1110 N LYS A1098 LINK O6 G B 40 MG MG B 101 1555 1555 2.32 LINK O3' DC C 11 MG MG A1201 1555 1555 2.56 LINK OP1 DC C 12 MG MG A1201 1555 1555 2.38 LINK OD1 ASP A 598 MG MG A1201 1555 1555 2.02 LINK OD1 ASN A 622 MG MG A1201 1555 1555 2.76 LINK OD1 ASP A 824 MG MG A1203 1555 1555 2.94 SITE 1 AC1 1 G B 40 SITE 1 AC2 5 ASP A 598 ALA A 599 ASN A 622 DC C 11 SITE 2 AC2 5 DC C 12 SITE 1 AC3 1 LYS A 848 SITE 1 AC4 3 ASP A 824 SER A 961 HOH C 101 CRYST1 321.708 75.333 70.300 90.00 93.47 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.003108 0.000000 0.000188 0.00000 SCALE2 0.000000 0.013274 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014251 0.00000