HEADER TRANSFERASE 24-FEB-20 6M14 TITLE CRYSTAL STRUCTURE OF THE BARD1 BRCT MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: BRCA1-ASSOCIATED RING DOMAIN PROTEIN 1; COMPND 3 CHAIN: B, A; COMPND 4 SYNONYM: BARD-1,RING-TYPE E3 UBIQUITIN TRANSFERASE BARD1; COMPND 5 EC: 2.3.2.27; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BARD1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS BRCT, DISEASE MUTATION, OLA1, ANTITUMOR PROTEIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.CHEN,W.T.HUANG REVDAT 3 29-NOV-23 6M14 1 REMARK REVDAT 2 09-MAR-22 6M14 1 JRNL REVDAT 1 24-FEB-21 6M14 0 JRNL AUTH T.CHEN,H.W.YEH,P.P.CHEN,W.T.HUANG,C.Y.WU,T.C.LIAO,S.L.LIN, JRNL AUTH 2 Y.Y.CHEN,K.T.LIN,S.D.HSU,H.C.CHENG JRNL TITL BARD1 IS AN ATPASE ACTIVATING PROTEIN FOR OLA1. JRNL REF BIOCHIM BIOPHYS ACTA GEN V.1866 30099 2022 JRNL REF 2 SUBJ JRNL REFN ISSN 1872-8006 JRNL PMID 35134491 JRNL DOI 10.1016/J.BBAGEN.2022.130099 REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.75 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.344 REMARK 3 COMPLETENESS FOR RANGE (%) : 74.7 REMARK 3 NUMBER OF REFLECTIONS : 41860 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.852 REMARK 3 FREE R VALUE TEST SET COUNT : 2306 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.7541 - 4.7300 0.96 4645 180 0.1856 0.2144 REMARK 3 2 4.7300 - 3.7573 0.92 4441 183 0.1488 0.1699 REMARK 3 3 3.7573 - 3.2832 0.94 4524 180 0.1624 0.2018 REMARK 3 4 3.2832 - 2.9834 0.96 4665 192 0.1632 0.1784 REMARK 3 5 2.9834 - 2.7698 0.98 4687 187 0.1714 0.1924 REMARK 3 6 2.7698 - 2.6066 0.98 4708 189 0.1693 0.2110 REMARK 3 7 2.6066 - 2.4762 0.97 4672 188 0.1602 0.1860 REMARK 3 8 2.4762 - 2.3684 0.93 4463 175 0.1617 0.2094 REMARK 3 9 2.3684 - 2.2773 0.69 3342 129 0.1684 0.2076 REMARK 3 10 2.2773 - 2.1987 0.53 2585 106 0.1812 0.2020 REMARK 3 11 2.1987 - 2.1300 0.52 2489 99 0.1881 0.2375 REMARK 3 12 2.1300 - 2.0692 0.52 2472 100 0.1906 0.1947 REMARK 3 13 2.0692 - 2.0147 0.51 2474 100 0.1853 0.1975 REMARK 3 14 2.0147 - 1.9656 0.51 2479 100 0.1928 0.2084 REMARK 3 15 1.9656 - 1.9209 0.51 2470 100 0.1984 0.2199 REMARK 3 16 1.9209 - 1.8800 0.51 2444 98 0.2142 0.2569 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.158 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.942 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 3468 REMARK 3 ANGLE : 1.109 4694 REMARK 3 CHIRALITY : 0.064 512 REMARK 3 PLANARITY : 0.009 592 REMARK 3 DIHEDRAL : 10.899 2096 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 569 THROUGH 628 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.0297 16.2190 8.6011 REMARK 3 T TENSOR REMARK 3 T11: 0.2924 T22: 0.1971 REMARK 3 T33: 0.1698 T12: -0.0592 REMARK 3 T13: 0.0498 T23: -0.0285 REMARK 3 L TENSOR REMARK 3 L11: 1.6435 L22: 4.9303 REMARK 3 L33: 3.1904 L12: 0.2638 REMARK 3 L13: 1.0808 L23: 2.0123 REMARK 3 S TENSOR REMARK 3 S11: -0.0216 S12: 0.0878 S13: 0.0691 REMARK 3 S21: -0.2671 S22: -0.0514 S23: 0.0648 REMARK 3 S31: -0.6760 S32: 0.1555 S33: 0.0610 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 629 THROUGH 655 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.2250 12.8335 19.1954 REMARK 3 T TENSOR REMARK 3 T11: 0.3085 T22: 0.1637 REMARK 3 T33: 0.1934 T12: -0.0425 REMARK 3 T13: -0.0077 T23: -0.0250 REMARK 3 L TENSOR REMARK 3 L11: 3.6653 L22: 2.6715 REMARK 3 L33: 5.6102 L12: 0.4352 REMARK 3 L13: 1.3517 L23: 3.6616 REMARK 3 S TENSOR REMARK 3 S11: 0.2446 S12: -0.1840 S13: -0.0167 REMARK 3 S21: 0.7232 S22: 0.1563 S23: -0.4854 REMARK 3 S31: 0.1124 S32: 0.3519 S33: -0.1380 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 656 THROUGH 675 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.7236 -0.4908 3.4034 REMARK 3 T TENSOR REMARK 3 T11: 0.1785 T22: 0.2205 REMARK 3 T33: 0.2729 T12: -0.0170 REMARK 3 T13: -0.0434 T23: -0.0791 REMARK 3 L TENSOR REMARK 3 L11: 2.4954 L22: 1.0706 REMARK 3 L33: 3.1182 L12: 0.7764 REMARK 3 L13: 1.1910 L23: 1.5346 REMARK 3 S TENSOR REMARK 3 S11: 0.0001 S12: -0.1714 S13: 0.3026 REMARK 3 S21: 0.2088 S22: 0.2054 S23: -0.4699 REMARK 3 S31: -0.1615 S32: 0.6313 S33: 0.0023 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 676 THROUGH 728 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.1857 -4.2887 -11.2918 REMARK 3 T TENSOR REMARK 3 T11: 0.1378 T22: 0.1627 REMARK 3 T33: 0.1232 T12: 0.0001 REMARK 3 T13: 0.0228 T23: 0.0077 REMARK 3 L TENSOR REMARK 3 L11: 3.2646 L22: 2.9095 REMARK 3 L33: 2.3945 L12: -0.5667 REMARK 3 L13: 0.2493 L23: 0.2543 REMARK 3 S TENSOR REMARK 3 S11: -0.0507 S12: 0.4101 S13: 0.1931 REMARK 3 S21: -0.2485 S22: 0.0379 S23: -0.1221 REMARK 3 S31: -0.1976 S32: 0.0630 S33: -0.0532 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 729 THROUGH 754 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.6377 -11.6705 -8.3498 REMARK 3 T TENSOR REMARK 3 T11: 0.0907 T22: 0.1055 REMARK 3 T33: 0.0662 T12: 0.0160 REMARK 3 T13: 0.0044 T23: 0.0276 REMARK 3 L TENSOR REMARK 3 L11: 6.1456 L22: 3.4182 REMARK 3 L33: 2.4756 L12: -0.8194 REMARK 3 L13: -0.1195 L23: 0.1726 REMARK 3 S TENSOR REMARK 3 S11: -0.0732 S12: -0.0161 S13: -0.1998 REMARK 3 S21: -0.0737 S22: 0.1778 S23: 0.1893 REMARK 3 S31: 0.0385 S32: -0.2302 S33: 0.0167 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 755 THROUGH 777 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.1373 -7.3127 -0.6345 REMARK 3 T TENSOR REMARK 3 T11: 0.0879 T22: 0.1011 REMARK 3 T33: 0.0853 T12: 0.0261 REMARK 3 T13: 0.0190 T23: -0.0073 REMARK 3 L TENSOR REMARK 3 L11: 4.4797 L22: 2.9205 REMARK 3 L33: 4.2472 L12: 0.0241 REMARK 3 L13: 0.9329 L23: 1.5071 REMARK 3 S TENSOR REMARK 3 S11: 0.0202 S12: -0.3549 S13: 0.2008 REMARK 3 S21: 0.2012 S22: 0.0255 S23: -0.0307 REMARK 3 S31: -0.0282 S32: -0.1193 S33: -0.1168 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 569 THROUGH 617 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.8846 14.4853 37.2129 REMARK 3 T TENSOR REMARK 3 T11: 0.1468 T22: 0.1761 REMARK 3 T33: 0.2145 T12: -0.0404 REMARK 3 T13: 0.0396 T23: -0.0759 REMARK 3 L TENSOR REMARK 3 L11: 3.3606 L22: 3.5849 REMARK 3 L33: 3.8396 L12: 1.0708 REMARK 3 L13: 0.0482 L23: 0.9391 REMARK 3 S TENSOR REMARK 3 S11: 0.0899 S12: -0.1624 S13: 0.3461 REMARK 3 S21: -0.1207 S22: -0.0390 S23: -0.0253 REMARK 3 S31: -0.4490 S32: 0.1051 S33: 0.0203 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 618 THROUGH 642 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.0582 11.0466 37.6655 REMARK 3 T TENSOR REMARK 3 T11: 0.1151 T22: 0.1023 REMARK 3 T33: 0.2376 T12: -0.0079 REMARK 3 T13: 0.1273 T23: -0.2434 REMARK 3 L TENSOR REMARK 3 L11: 0.9925 L22: 2.3053 REMARK 3 L33: 3.1732 L12: 0.1020 REMARK 3 L13: -0.3829 L23: 1.4983 REMARK 3 S TENSOR REMARK 3 S11: 0.0343 S12: -0.1993 S13: 0.3671 REMARK 3 S21: -0.0773 S22: -0.1263 S23: 0.1228 REMARK 3 S31: -0.1784 S32: -0.0012 S33: -0.2133 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 643 THROUGH 655 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.2975 8.2241 42.8081 REMARK 3 T TENSOR REMARK 3 T11: 0.0978 T22: 0.2150 REMARK 3 T33: 0.1869 T12: -0.0279 REMARK 3 T13: 0.0672 T23: -0.1147 REMARK 3 L TENSOR REMARK 3 L11: 2.0170 L22: 1.7146 REMARK 3 L33: 4.1638 L12: -1.1775 REMARK 3 L13: -0.8867 L23: 0.7236 REMARK 3 S TENSOR REMARK 3 S11: -0.0088 S12: -0.2073 S13: 0.1380 REMARK 3 S21: 0.0845 S22: -0.0688 S23: 0.0655 REMARK 3 S31: -0.0203 S32: 0.2317 S33: -0.0789 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 656 THROUGH 675 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.0885 -5.1059 31.3870 REMARK 3 T TENSOR REMARK 3 T11: 0.2610 T22: 0.2403 REMARK 3 T33: 0.0947 T12: -0.1436 REMARK 3 T13: 0.0680 T23: -0.1226 REMARK 3 L TENSOR REMARK 3 L11: 0.5505 L22: 1.2558 REMARK 3 L33: 3.0044 L12: -0.7432 REMARK 3 L13: -0.9195 L23: 1.1610 REMARK 3 S TENSOR REMARK 3 S11: -0.0399 S12: -0.1934 S13: -0.0053 REMARK 3 S21: 0.5014 S22: -0.2363 S23: 0.2032 REMARK 3 S31: 0.2309 S32: -0.0902 S33: -0.5551 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 676 THROUGH 728 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.7294 -5.8502 14.5992 REMARK 3 T TENSOR REMARK 3 T11: 0.0782 T22: 0.1652 REMARK 3 T33: 0.1139 T12: 0.0048 REMARK 3 T13: 0.0125 T23: -0.0318 REMARK 3 L TENSOR REMARK 3 L11: 2.4446 L22: 3.4187 REMARK 3 L33: 3.3039 L12: 0.6593 REMARK 3 L13: -0.8117 L23: 0.0218 REMARK 3 S TENSOR REMARK 3 S11: 0.1389 S12: 0.0822 S13: 0.1377 REMARK 3 S21: -0.1434 S22: -0.0568 S23: -0.0269 REMARK 3 S31: -0.0414 S32: 0.0929 S33: -0.1173 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 729 THROUGH 754 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.0695 -5.3027 7.7692 REMARK 3 T TENSOR REMARK 3 T11: 0.1721 T22: 0.1664 REMARK 3 T33: 0.1578 T12: 0.0298 REMARK 3 T13: -0.0472 T23: -0.0193 REMARK 3 L TENSOR REMARK 3 L11: 3.8393 L22: 4.0612 REMARK 3 L33: 3.4303 L12: 0.7714 REMARK 3 L13: -0.2322 L23: 0.1062 REMARK 3 S TENSOR REMARK 3 S11: 0.0693 S12: 0.3465 S13: 0.3875 REMARK 3 S21: -0.5136 S22: -0.1165 S23: 0.4628 REMARK 3 S31: -0.3137 S32: -0.3196 S33: -0.1990 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 755 THROUGH 777 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.6959 -1.7853 16.2859 REMARK 3 T TENSOR REMARK 3 T11: 0.1394 T22: 0.1614 REMARK 3 T33: 0.2110 T12: -0.0021 REMARK 3 T13: 0.0099 T23: -0.0887 REMARK 3 L TENSOR REMARK 3 L11: 1.7707 L22: 1.6602 REMARK 3 L33: 4.3534 L12: -0.7865 REMARK 3 L13: -1.4586 L23: 0.6947 REMARK 3 S TENSOR REMARK 3 S11: 0.0478 S12: 0.0039 S13: 0.3167 REMARK 3 S21: -0.0402 S22: -0.2753 S23: 0.4394 REMARK 3 S31: -0.2424 S32: -0.4748 S33: 0.1135 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN 'A' REMARK 3 SELECTION : CHAIN 'B' REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6M14 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1300015235. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41860 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.880 REMARK 200 RESOLUTION RANGE LOW (A) : 27.754 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.03400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : 0.23500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2NTE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES PH 6.5, 0.2 M AMMONIUM REMARK 280 SULFATE,22% PEG 5000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.92500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.41200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.62700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.41200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.92500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.62700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 568 REMARK 465 GLY A 568 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH12 ARG B 659 O PHE B 770 1.34 REMARK 500 HZ1 LYS B 684 O HOH B 805 1.41 REMARK 500 HZ3 LYS A 583 O HOH A 902 1.52 REMARK 500 HH21 ARG A 641 O HOH A 903 1.55 REMARK 500 HG CYS A 743 O HOH A 1049 1.57 REMARK 500 O HOH B 838 O HOH B 933 1.87 REMARK 500 O HOH A 991 O HOH A 1044 1.93 REMARK 500 O HOH B 864 O HOH B 948 1.97 REMARK 500 O HOH B 895 O HOH B 921 1.99 REMARK 500 O HOH B 902 O HOH B 932 2.04 REMARK 500 O SER B 616 O HOH B 801 2.05 REMARK 500 O HOH A 939 O HOH A 1026 2.06 REMARK 500 O HOH A 1041 O HOH A 1054 2.07 REMARK 500 O ASP B 612 O HOH B 802 2.08 REMARK 500 SG CYS A 743 O HOH A 1049 2.09 REMARK 500 NH1 ARG B 659 O PHE B 770 2.10 REMARK 500 OE1 GLU B 771 O HOH B 803 2.10 REMARK 500 O ARG B 664 O HOH B 804 2.12 REMARK 500 O HOH A 1047 O HOH A 1056 2.15 REMARK 500 OD1 ASN A 626 O HOH A 901 2.16 REMARK 500 O HOH B 803 O HOH B 929 2.18 REMARK 500 O HOH A 950 O HOH A 984 2.18 REMARK 500 NZ LYS B 684 O HOH B 805 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU B 655 -123.66 70.91 REMARK 500 ASP B 710 54.15 -97.85 REMARK 500 ASN B 718 42.61 -141.50 REMARK 500 ASP B 776 -78.16 -102.16 REMARK 500 GLU A 655 -124.71 73.00 REMARK 500 LYS A 684 -51.44 -122.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 963 DISTANCE = 5.82 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 801 DBREF 6M14 B 568 777 UNP Q99728 BARD1_HUMAN 568 777 DBREF 6M14 A 568 777 UNP Q99728 BARD1_HUMAN 568 777 SEQADV 6M14 LEU B 695 UNP Q99728 VAL 695 ENGINEERED MUTATION SEQADV 6M14 LEU A 695 UNP Q99728 VAL 695 ENGINEERED MUTATION SEQRES 1 B 210 GLY PRO LEU VAL LEU ILE GLY SER GLY LEU SER SER GLU SEQRES 2 B 210 GLN GLN LYS MET LEU SER GLU LEU ALA VAL ILE LEU LYS SEQRES 3 B 210 ALA LYS LYS TYR THR GLU PHE ASP SER THR VAL THR HIS SEQRES 4 B 210 VAL VAL VAL PRO GLY ASP ALA VAL GLN SER THR LEU LYS SEQRES 5 B 210 CYS MET LEU GLY ILE LEU ASN GLY CYS TRP ILE LEU LYS SEQRES 6 B 210 PHE GLU TRP VAL LYS ALA CYS LEU ARG ARG LYS VAL CYS SEQRES 7 B 210 GLU GLN GLU GLU LYS TYR GLU ILE PRO GLU GLY PRO ARG SEQRES 8 B 210 ARG SER ARG LEU ASN ARG GLU GLN LEU LEU PRO LYS LEU SEQRES 9 B 210 PHE ASP GLY CYS TYR PHE TYR LEU TRP GLY THR PHE LYS SEQRES 10 B 210 HIS HIS PRO LYS ASP ASN LEU ILE LYS LEU LEU THR ALA SEQRES 11 B 210 GLY GLY GLY GLN ILE LEU SER ARG LYS PRO LYS PRO ASP SEQRES 12 B 210 SER ASP VAL THR GLN THR ILE ASN THR VAL ALA TYR HIS SEQRES 13 B 210 ALA ARG PRO ASP SER ASP GLN ARG PHE CYS THR GLN TYR SEQRES 14 B 210 ILE ILE TYR GLU ASP LEU CYS ASN TYR HIS PRO GLU ARG SEQRES 15 B 210 VAL ARG GLN GLY LYS VAL TRP LYS ALA PRO SER SER TRP SEQRES 16 B 210 PHE ILE ASP CYS VAL MET SER PHE GLU LEU LEU PRO LEU SEQRES 17 B 210 ASP SER SEQRES 1 A 210 GLY PRO LEU VAL LEU ILE GLY SER GLY LEU SER SER GLU SEQRES 2 A 210 GLN GLN LYS MET LEU SER GLU LEU ALA VAL ILE LEU LYS SEQRES 3 A 210 ALA LYS LYS TYR THR GLU PHE ASP SER THR VAL THR HIS SEQRES 4 A 210 VAL VAL VAL PRO GLY ASP ALA VAL GLN SER THR LEU LYS SEQRES 5 A 210 CYS MET LEU GLY ILE LEU ASN GLY CYS TRP ILE LEU LYS SEQRES 6 A 210 PHE GLU TRP VAL LYS ALA CYS LEU ARG ARG LYS VAL CYS SEQRES 7 A 210 GLU GLN GLU GLU LYS TYR GLU ILE PRO GLU GLY PRO ARG SEQRES 8 A 210 ARG SER ARG LEU ASN ARG GLU GLN LEU LEU PRO LYS LEU SEQRES 9 A 210 PHE ASP GLY CYS TYR PHE TYR LEU TRP GLY THR PHE LYS SEQRES 10 A 210 HIS HIS PRO LYS ASP ASN LEU ILE LYS LEU LEU THR ALA SEQRES 11 A 210 GLY GLY GLY GLN ILE LEU SER ARG LYS PRO LYS PRO ASP SEQRES 12 A 210 SER ASP VAL THR GLN THR ILE ASN THR VAL ALA TYR HIS SEQRES 13 A 210 ALA ARG PRO ASP SER ASP GLN ARG PHE CYS THR GLN TYR SEQRES 14 A 210 ILE ILE TYR GLU ASP LEU CYS ASN TYR HIS PRO GLU ARG SEQRES 15 A 210 VAL ARG GLN GLY LYS VAL TRP LYS ALA PRO SER SER TRP SEQRES 16 A 210 PHE ILE ASP CYS VAL MET SER PHE GLU LEU LEU PRO LEU SEQRES 17 A 210 ASP SER HET SO4 A 801 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 O4 S 2- FORMUL 4 HOH *349(H2 O) HELIX 1 AA1 SER B 578 LEU B 592 1 15 HELIX 2 AA2 THR B 617 ASN B 626 1 10 HELIX 3 AA3 PHE B 633 LYS B 643 1 11 HELIX 4 AA4 GLN B 647 GLU B 652 5 6 HELIX 5 AA5 GLU B 655 GLN B 666 1 12 HELIX 6 AA6 PRO B 687 GLY B 698 1 12 HELIX 7 AA7 SER B 711 ILE B 717 1 7 HELIX 8 AA8 SER B 728 PHE B 732 5 5 HELIX 9 AA9 SER B 760 PHE B 770 1 11 HELIX 10 AB1 SER A 578 LYS A 593 1 16 HELIX 11 AB2 THR A 617 ASN A 626 1 10 HELIX 12 AB3 PHE A 633 LYS A 643 1 11 HELIX 13 AB4 GLN A 647 GLU A 652 5 6 HELIX 14 AB5 GLU A 655 GLN A 666 1 12 HELIX 15 AB6 PRO A 687 GLY A 698 1 12 HELIX 16 AB7 LYS A 708 THR A 716 5 9 HELIX 17 AB8 SER A 728 PHE A 732 5 5 HELIX 18 AB9 SER A 760 PHE A 770 1 11 SHEET 1 AA1 4 LYS B 595 LYS B 596 0 SHEET 2 AA1 4 VAL B 571 GLY B 574 1 N LEU B 572 O LYS B 595 SHEET 3 AA1 4 HIS B 606 VAL B 609 1 O VAL B 608 N ILE B 573 SHEET 4 AA1 4 TRP B 629 LYS B 632 1 O TRP B 629 N VAL B 607 SHEET 1 AA2 5 GLN B 701 ILE B 702 0 SHEET 2 AA2 5 TYR B 676 LEU B 679 1 N PHE B 677 O GLN B 701 SHEET 3 AA2 5 GLN B 735 TYR B 739 1 O ILE B 738 N TYR B 678 SHEET 4 AA2 5 VAL B 755 PRO B 759 1 O TRP B 756 N ILE B 737 SHEET 5 AA2 5 ARG B 751 GLN B 752 -1 N GLN B 752 O VAL B 755 SHEET 1 AA3 4 LYS A 595 TYR A 597 0 SHEET 2 AA3 4 VAL A 571 GLY A 574 1 N LEU A 572 O LYS A 595 SHEET 3 AA3 4 HIS A 606 VAL A 609 1 O VAL A 608 N ILE A 573 SHEET 4 AA3 4 TRP A 629 LYS A 632 1 O TRP A 629 N VAL A 607 SHEET 1 AA4 5 GLN A 701 ILE A 702 0 SHEET 2 AA4 5 TYR A 676 LEU A 679 1 N PHE A 677 O GLN A 701 SHEET 3 AA4 5 GLN A 735 TYR A 739 1 O ILE A 738 N TYR A 678 SHEET 4 AA4 5 VAL A 755 PRO A 759 1 O TRP A 756 N ILE A 737 SHEET 5 AA4 5 ARG A 751 GLN A 752 -1 N GLN A 752 O VAL A 755 SITE 1 AC1 9 LYS A 595 TYR A 597 ILE A 717 ASN A 718 SITE 2 AC1 9 HOH A 961 HOH A1029 ASN B 718 HOH B 809 SITE 3 AC1 9 HOH B 833 CRYST1 57.850 75.254 116.824 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017286 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013288 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008560 0.00000