HEADER ISOMERASE 26-FEB-20 6M1J TITLE THE DNA GYRASE B ATP BINDING DOMAIN OF PSEUDOMONAS AERUGINOSA IN TITLE 2 COMPLEX WITH COMPOUND 12X COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA GYRASE SUBUNIT B; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: ATP BINDING DOMAIN; COMPND 5 EC: 5.6.2.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA (STRAIN ATCC 15692 / DSM SOURCE 3 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1); SOURCE 4 ORGANISM_TAXID: 208964; SOURCE 5 STRAIN: ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 SOURCE 6 / 1C / PRS 101 / PAO1; SOURCE 7 GENE: GYRB, PA0004; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS DNA GYRASE, TOPOISOMERASE, ATPASE DOMAIN, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.H.XU,Z.ZHOU REVDAT 3 29-NOV-23 6M1J 1 REMARK REVDAT 2 23-SEP-20 6M1J 1 JRNL REVDAT 1 02-SEP-20 6M1J 0 JRNL AUTH Y.HU,H.SHI,M.ZHOU,Q.REN,W.ZHU,W.ZHANG,Z.ZHANG,C.ZHOU,Y.LIU, JRNL AUTH 2 X.DING,H.C.SHEN,S.F.YAN,F.DEY,W.WU,G.ZHAI,Z.ZHOU,Z.XU,Y.JI, JRNL AUTH 3 H.LV,T.JIANG,W.WANG,Y.XU,M.VERCRUYSSE,X.YAO,Y.MAO,X.YU, JRNL AUTH 4 K.BRADLEY,X.TAN JRNL TITL DISCOVERY OF PYRIDO[2,3-B]INDOLE DERIVATIVES WITH JRNL TITL 2 GRAM-NEGATIVE ACTIVITY TARGETING BOTH DNA GYRASE AND JRNL TITL 3 TOPOISOMERASE IV. JRNL REF J.MED.CHEM. V. 63 9623 2020 JRNL REFN ISSN 0022-2623 JRNL PMID 32787097 JRNL DOI 10.1021/ACS.JMEDCHEM.0C00768 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 3 NUMBER OF REFLECTIONS : 50518 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 2461 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.9190 - 4.4559 0.86 2652 128 0.1911 0.2272 REMARK 3 2 4.4559 - 3.5378 0.90 2610 139 0.1607 0.1831 REMARK 3 3 3.5378 - 3.0909 0.90 2583 144 0.1741 0.2134 REMARK 3 4 3.0909 - 2.8084 0.91 2658 107 0.1887 0.2282 REMARK 3 5 2.8084 - 2.6072 0.92 2655 105 0.1837 0.2059 REMARK 3 6 2.6072 - 2.4535 0.93 2649 137 0.1864 0.2556 REMARK 3 7 2.4535 - 2.3306 0.94 2655 150 0.1828 0.2142 REMARK 3 8 2.3306 - 2.2292 0.94 2641 149 0.1866 0.2300 REMARK 3 9 2.2292 - 2.1434 0.95 2670 142 0.1905 0.2429 REMARK 3 10 2.1434 - 2.0694 0.95 2671 138 0.1846 0.2125 REMARK 3 11 2.0694 - 2.0047 0.96 2703 141 0.1895 0.2214 REMARK 3 12 2.0047 - 1.9474 0.95 2707 122 0.1996 0.2418 REMARK 3 13 1.9474 - 1.8962 0.96 2696 119 0.2150 0.2489 REMARK 3 14 1.8962 - 1.8499 0.96 2708 161 0.2324 0.2853 REMARK 3 15 1.8499 - 1.8079 0.96 2667 160 0.2604 0.3181 REMARK 3 16 1.8079 - 1.7694 0.97 2732 137 0.2605 0.3081 REMARK 3 17 1.7694 - 1.7340 0.97 2676 153 0.2746 0.3119 REMARK 3 18 1.7340 - 1.7013 0.96 2724 129 0.2843 0.3016 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.000 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.41 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3141 REMARK 3 ANGLE : 0.922 4270 REMARK 3 CHIRALITY : 0.066 459 REMARK 3 PLANARITY : 0.006 548 REMARK 3 DIHEDRAL : 22.158 1806 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' REMARK 3 ORIGIN FOR THE GROUP (A): 18.9963 63.7731 50.6117 REMARK 3 T TENSOR REMARK 3 T11: 0.0963 T22: 0.0575 REMARK 3 T33: 0.0884 T12: 0.0050 REMARK 3 T13: 0.0001 T23: -0.0201 REMARK 3 L TENSOR REMARK 3 L11: 1.3724 L22: 0.8195 REMARK 3 L33: 1.8943 L12: -0.1961 REMARK 3 L13: 0.1002 L23: 0.1633 REMARK 3 S TENSOR REMARK 3 S11: 0.0522 S12: 0.0055 S13: -0.0221 REMARK 3 S21: -0.0288 S22: 0.0155 S23: -0.0720 REMARK 3 S31: 0.0208 S32: -0.0052 S33: -0.0508 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' REMARK 3 ORIGIN FOR THE GROUP (A): 19.1118 27.4623 48.1139 REMARK 3 T TENSOR REMARK 3 T11: 0.1533 T22: 0.2331 REMARK 3 T33: 0.1823 T12: 0.0277 REMARK 3 T13: -0.0286 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 2.6315 L22: 1.8565 REMARK 3 L33: 1.2750 L12: -0.9914 REMARK 3 L13: 0.9320 L23: -0.1220 REMARK 3 S TENSOR REMARK 3 S11: -0.1240 S12: -0.3907 S13: -0.0415 REMARK 3 S21: 0.1059 S22: 0.1112 S23: 0.0051 REMARK 3 S31: -0.0189 S32: -0.0130 S33: 0.0205 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESSEQ 17:21 OR RESSEQ 23 REMARK 3 OR RESSEQ 25:39 OR RESSEQ 41:83 OR RESSEQ REMARK 3 90:100 OR RESSEQ 119:136 OR RESSEQ 138: REMARK 3 142 OR RESSEQ 144:152 OR RESSEQ 155:160 REMARK 3 OR RESSEQ 162:192 OR RESSEQ 194:195 OR REMARK 3 RESSEQ 197:221)) REMARK 3 SELECTION : (CHAIN B AND (RESSEQ 17:21 OR RESSEQ 23 REMARK 3 OR RESSEQ 25:39 OR RESSEQ 41:83 OR RESSEQ REMARK 3 90:100 OR RESSEQ 119:136 OR RESSEQ 138: REMARK 3 142 OR RESSEQ 144:152 OR RESSEQ 155:160 REMARK 3 OR RESSEQ 162:192 OR RESSEQ 194:195 OR REMARK 3 RESSEQ 197:221)) REMARK 3 ATOM PAIRS NUMBER : 1501 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6M1J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1300015858. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-SEP-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50537 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 35.927 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.5900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4KFG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 38.00%W/V PEG 3350, 200.00MM LISO4, REMARK 280 100.00MM SODIUM CITRATE (PH 5.6), VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y+1/2,-Z REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 72.60800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 80.37150 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 72.60800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 80.37150 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 72.60800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 80.37150 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 72.60800 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 80.37150 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 533 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 607 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 512 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 16 REMARK 465 LYS A 86 REMARK 465 GLU A 87 REMARK 465 GLU A 88 REMARK 465 GLY A 89 REMARK 465 PHE A 106 REMARK 465 ASP A 107 REMARK 465 ASP A 108 REMARK 465 ASN A 109 REMARK 465 THR A 110 REMARK 465 TYR A 111 REMARK 465 LYS A 112 REMARK 465 VAL A 113 REMARK 465 SER A 114 REMARK 465 GLY A 115 REMARK 465 GLY A 116 REMARK 465 LEU A 117 REMARK 465 LEU A 222 REMARK 465 GLU A 223 REMARK 465 HIS A 224 REMARK 465 HIS A 225 REMARK 465 HIS A 226 REMARK 465 HIS A 227 REMARK 465 HIS A 228 REMARK 465 HIS A 229 REMARK 465 MET B 16 REMARK 465 HIS B 101 REMARK 465 ALA B 102 REMARK 465 GLY B 103 REMARK 465 GLY B 104 REMARK 465 LYS B 105 REMARK 465 PHE B 106 REMARK 465 ASP B 107 REMARK 465 ASP B 108 REMARK 465 ASN B 109 REMARK 465 THR B 110 REMARK 465 TYR B 111 REMARK 465 LYS B 112 REMARK 465 VAL B 113 REMARK 465 SER B 114 REMARK 465 GLY B 115 REMARK 465 GLY B 116 REMARK 465 LEU B 117 REMARK 465 HIS B 118 REMARK 465 LEU B 222 REMARK 465 GLU B 223 REMARK 465 HIS B 224 REMARK 465 HIS B 225 REMARK 465 HIS B 226 REMARK 465 HIS B 227 REMARK 465 HIS B 228 REMARK 465 HIS B 229 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 105 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 401 O HOH B 496 2.05 REMARK 500 O HOH A 406 O HOH A 546 2.05 REMARK 500 O HOH A 546 O HOH A 551 2.07 REMARK 500 O ILE B 84 O HOH B 401 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 415 O HOH A 497 1556 2.05 REMARK 500 O HOH A 599 O HOH A 599 4568 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG B 138 142.82 -171.71 REMARK 500 ASN B 180 75.21 44.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 532 DISTANCE = 5.90 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 304 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 76 O REMARK 620 2 GLY A 77 O 82.6 REMARK 620 3 SER A 165 O 93.0 74.2 REMARK 620 4 SER A 165 OG 157.9 75.5 84.0 REMARK 620 5 HOH A 548 O 87.1 106.9 178.9 96.3 REMARK 620 6 HOH A 552 O 113.4 155.5 86.0 88.3 92.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EZ6 A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EZ6 B 302 DBREF 6M1J A 17 221 UNP Q9I7C2 GYRB_PSEAE 17 221 DBREF 6M1J B 17 221 UNP Q9I7C2 GYRB_PSEAE 17 221 SEQADV 6M1J MET A 16 UNP Q9I7C2 EXPRESSION TAG SEQADV 6M1J LEU A 222 UNP Q9I7C2 EXPRESSION TAG SEQADV 6M1J GLU A 223 UNP Q9I7C2 EXPRESSION TAG SEQADV 6M1J HIS A 224 UNP Q9I7C2 EXPRESSION TAG SEQADV 6M1J HIS A 225 UNP Q9I7C2 EXPRESSION TAG SEQADV 6M1J HIS A 226 UNP Q9I7C2 EXPRESSION TAG SEQADV 6M1J HIS A 227 UNP Q9I7C2 EXPRESSION TAG SEQADV 6M1J HIS A 228 UNP Q9I7C2 EXPRESSION TAG SEQADV 6M1J HIS A 229 UNP Q9I7C2 EXPRESSION TAG SEQADV 6M1J MET B 16 UNP Q9I7C2 EXPRESSION TAG SEQADV 6M1J LEU B 222 UNP Q9I7C2 EXPRESSION TAG SEQADV 6M1J GLU B 223 UNP Q9I7C2 EXPRESSION TAG SEQADV 6M1J HIS B 224 UNP Q9I7C2 EXPRESSION TAG SEQADV 6M1J HIS B 225 UNP Q9I7C2 EXPRESSION TAG SEQADV 6M1J HIS B 226 UNP Q9I7C2 EXPRESSION TAG SEQADV 6M1J HIS B 227 UNP Q9I7C2 EXPRESSION TAG SEQADV 6M1J HIS B 228 UNP Q9I7C2 EXPRESSION TAG SEQADV 6M1J HIS B 229 UNP Q9I7C2 EXPRESSION TAG SEQRES 1 A 214 MET GLY LEU ASP ALA VAL ARG LYS ARG PRO GLY MET TYR SEQRES 2 A 214 ILE GLY ASP THR ASP ASP GLY THR GLY LEU HIS HIS MET SEQRES 3 A 214 VAL PHE GLU VAL VAL ASP ASN SER ILE ASP GLU ALA LEU SEQRES 4 A 214 ALA GLY TYR CYS SER GLU ILE SER ILE THR ILE HIS THR SEQRES 5 A 214 ASP GLU SER ILE THR VAL ARG ASP ASN GLY ARG GLY ILE SEQRES 6 A 214 PRO VAL ASP ILE HIS LYS GLU GLU GLY VAL SER ALA ALA SEQRES 7 A 214 GLU VAL ILE MET THR VAL LEU HIS ALA GLY GLY LYS PHE SEQRES 8 A 214 ASP ASP ASN THR TYR LYS VAL SER GLY GLY LEU HIS GLY SEQRES 9 A 214 VAL GLY VAL SER VAL VAL ASN ALA LEU SER HIS GLU LEU SEQRES 10 A 214 ARG LEU THR ILE ARG ARG HIS ASN LYS VAL TRP GLU GLN SEQRES 11 A 214 VAL TYR HIS HIS GLY VAL PRO GLN PHE PRO LEU ARG GLU SEQRES 12 A 214 VAL GLY GLU THR ASP GLY SER GLY THR GLU VAL HIS PHE SEQRES 13 A 214 LYS PRO SER PRO GLU THR PHE SER ASN ILE HIS PHE SER SEQRES 14 A 214 TRP ASP ILE LEU ALA LYS ARG ILE ARG GLU LEU SER PHE SEQRES 15 A 214 LEU ASN SER GLY VAL GLY ILE LEU LEU ARG ASP GLU ARG SEQRES 16 A 214 THR GLY LYS GLU GLU LEU PHE LYS TYR GLU GLY LEU GLU SEQRES 17 A 214 HIS HIS HIS HIS HIS HIS SEQRES 1 B 214 MET GLY LEU ASP ALA VAL ARG LYS ARG PRO GLY MET TYR SEQRES 2 B 214 ILE GLY ASP THR ASP ASP GLY THR GLY LEU HIS HIS MET SEQRES 3 B 214 VAL PHE GLU VAL VAL ASP ASN SER ILE ASP GLU ALA LEU SEQRES 4 B 214 ALA GLY TYR CYS SER GLU ILE SER ILE THR ILE HIS THR SEQRES 5 B 214 ASP GLU SER ILE THR VAL ARG ASP ASN GLY ARG GLY ILE SEQRES 6 B 214 PRO VAL ASP ILE HIS LYS GLU GLU GLY VAL SER ALA ALA SEQRES 7 B 214 GLU VAL ILE MET THR VAL LEU HIS ALA GLY GLY LYS PHE SEQRES 8 B 214 ASP ASP ASN THR TYR LYS VAL SER GLY GLY LEU HIS GLY SEQRES 9 B 214 VAL GLY VAL SER VAL VAL ASN ALA LEU SER HIS GLU LEU SEQRES 10 B 214 ARG LEU THR ILE ARG ARG HIS ASN LYS VAL TRP GLU GLN SEQRES 11 B 214 VAL TYR HIS HIS GLY VAL PRO GLN PHE PRO LEU ARG GLU SEQRES 12 B 214 VAL GLY GLU THR ASP GLY SER GLY THR GLU VAL HIS PHE SEQRES 13 B 214 LYS PRO SER PRO GLU THR PHE SER ASN ILE HIS PHE SER SEQRES 14 B 214 TRP ASP ILE LEU ALA LYS ARG ILE ARG GLU LEU SER PHE SEQRES 15 B 214 LEU ASN SER GLY VAL GLY ILE LEU LEU ARG ASP GLU ARG SEQRES 16 B 214 THR GLY LYS GLU GLU LEU PHE LYS TYR GLU GLY LEU GLU SEQRES 17 B 214 HIS HIS HIS HIS HIS HIS HET DMS A 301 4 HET SO4 A 302 5 HET SO4 A 303 5 HET NA A 304 1 HET EZ6 A 305 37 HET DMS B 301 4 HET EZ6 B 302 37 HETNAM DMS DIMETHYL SULFOXIDE HETNAM SO4 SULFATE ION HETNAM NA SODIUM ION HETNAM EZ6 1-[5-[6-FLUORANYL-8-(METHYLAMINO)-4-[3- HETNAM 2 EZ6 (TRIFLUOROMETHYL)PYRAZOL-1-YL]-9H-PYRIDO[2,3-B]INDOL- HETNAM 3 EZ6 3-YL]PYRIMIDIN-2-YL]CYCLOPROPANE-1-CARBOXYLIC ACID FORMUL 3 DMS 2(C2 H6 O S) FORMUL 4 SO4 2(O4 S 2-) FORMUL 6 NA NA 1+ FORMUL 7 EZ6 2(C24 H17 F4 N7 O2) FORMUL 10 HOH *345(H2 O) HELIX 1 AA1 GLY A 17 ARG A 24 1 8 HELIX 2 AA2 ARG A 24 GLY A 30 1 7 HELIX 3 AA3 GLY A 35 ALA A 55 1 21 HELIX 4 AA4 SER A 91 VAL A 99 1 9 HELIX 5 AA5 GLY A 121 LEU A 128 1 8 HELIX 6 AA6 SER A 184 ASN A 199 1 16 HELIX 7 AA7 LEU B 18 ARG B 24 1 7 HELIX 8 AA8 PRO B 25 GLY B 30 1 6 HELIX 9 AA9 GLY B 35 ALA B 55 1 21 HELIX 10 AB1 SER B 91 VAL B 99 1 9 HELIX 11 AB2 GLY B 121 LEU B 128 1 8 HELIX 12 AB3 SER B 184 ASN B 199 1 16 SHEET 1 AA1 3 VAL A 151 PRO A 152 0 SHEET 2 AA1 3 LYS A 141 HIS A 148 -1 N HIS A 148 O VAL A 151 SHEET 3 AA1 3 ARG A 157 GLU A 161 -1 O VAL A 159 N VAL A 142 SHEET 1 AA2 8 VAL A 151 PRO A 152 0 SHEET 2 AA2 8 LYS A 141 HIS A 148 -1 N HIS A 148 O VAL A 151 SHEET 3 AA2 8 SER A 129 ARG A 138 -1 N ILE A 136 O TRP A 143 SHEET 4 AA2 8 GLY A 166 PRO A 173 -1 O GLY A 166 N ARG A 137 SHEET 5 AA2 8 ILE A 71 ASP A 75 -1 N VAL A 73 O VAL A 169 SHEET 6 AA2 8 GLU A 60 ILE A 65 -1 N THR A 64 O THR A 72 SHEET 7 AA2 8 GLY A 203 ASP A 208 1 O ARG A 207 N ILE A 63 SHEET 8 AA2 8 GLU A 214 PHE A 217 -1 O PHE A 217 N ILE A 204 SHEET 1 AA3 3 VAL B 151 PRO B 152 0 SHEET 2 AA3 3 LYS B 141 HIS B 148 -1 N HIS B 148 O VAL B 151 SHEET 3 AA3 3 ARG B 157 GLU B 161 -1 O VAL B 159 N VAL B 142 SHEET 1 AA4 8 VAL B 151 PRO B 152 0 SHEET 2 AA4 8 LYS B 141 HIS B 148 -1 N HIS B 148 O VAL B 151 SHEET 3 AA4 8 SER B 129 ARG B 138 -1 N LEU B 134 O GLN B 145 SHEET 4 AA4 8 GLY B 166 PRO B 173 -1 O HIS B 170 N ARG B 133 SHEET 5 AA4 8 ILE B 71 ASP B 75 -1 N VAL B 73 O VAL B 169 SHEET 6 AA4 8 GLU B 60 ILE B 65 -1 N SER B 62 O ARG B 74 SHEET 7 AA4 8 GLY B 203 ASP B 208 1 O LEU B 205 N ILE B 63 SHEET 8 AA4 8 GLU B 214 PHE B 217 -1 O GLU B 215 N LEU B 206 LINK O ASN A 76 NA NA A 304 1555 1555 2.25 LINK O GLY A 77 NA NA A 304 1555 1555 2.56 LINK O SER A 165 NA NA A 304 1555 1555 2.60 LINK OG SER A 165 NA NA A 304 1555 1555 2.24 LINK NA NA A 304 O HOH A 548 1555 1555 2.31 LINK NA NA A 304 O HOH A 552 1555 1555 2.32 SITE 1 AC1 5 ARG A 133 ARG A 157 GLU A 158 HOH A 427 SITE 2 AC1 5 HOH A 471 SITE 1 AC2 4 SER A 184 ASP A 186 HOH A 431 HOH A 506 SITE 1 AC3 6 VAL A 82 ASP A 83 ARG A 138 HIS A 139 SITE 2 AC3 6 HOH A 403 HOH B 409 SITE 1 AC4 5 ASN A 76 GLY A 77 SER A 165 HOH A 548 SITE 2 AC4 5 HOH A 552 SITE 1 AC5 19 ASN A 48 SER A 49 GLU A 52 VAL A 73 SITE 2 AC5 19 ASP A 75 ARG A 78 GLY A 79 ILE A 80 SITE 3 AC5 19 PRO A 81 ILE A 96 VAL A 122 THR A 167 SITE 4 AC5 19 HOH A 409 HOH A 439 HOH A 476 HOH A 496 SITE 5 AC5 19 PHE B 197 TYR B 219 GLY B 221 SITE 1 AC6 3 ARG B 74 ARG B 137 THR B 162 SITE 1 AC7 12 ASN B 48 SER B 49 GLU B 52 ASP B 75 SITE 2 AC7 12 ARG B 78 ILE B 80 PRO B 81 ILE B 96 SITE 3 AC7 12 VAL B 122 THR B 167 HOH B 430 HOH B 431 CRYST1 145.216 160.743 41.421 90.00 90.00 90.00 C 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006886 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006221 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024142 0.00000