HEADER BIOSYNTHETIC PROTEIN 26-FEB-20 6M27 TITLE SIROHYDROCHLORIN NICKELOCHELATASE CFBA IN COMPLEX WITH NI2+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: SIROHYDROCHLORIN COBALTOCHELATASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CBIXS,SIROHYDROCHLORIN NICKELCHELATASE; COMPND 5 EC: 4.99.1.3,4.99.1.11; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII (STRAIN ATCC SOURCE 3 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440); SOURCE 4 ORGANISM_TAXID: 243232; SOURCE 5 GENE: CBIX, CFBA, MJ0970; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: C41 KEYWDS CHELATASE, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.FUJISHIRO REVDAT 3 29-NOV-23 6M27 1 REMARK REVDAT 2 07-JUL-21 6M27 1 JRNL REVDAT 1 13-JAN-21 6M27 0 JRNL AUTH T.FUJISHIRO,S.OGAWA JRNL TITL THE NICKEL-SIROHYDROCHLORIN FORMATION MECHANISM OF THE JRNL TITL 2 ANCESTRAL CLASS II CHELATASE CFBA IN COENZYME F430 JRNL TITL 3 BIOSYNTHESIS. JRNL REF CHEM SCI V. 12 2172 2021 JRNL REFN ISSN 2041-6520 JRNL PMID 34163982 JRNL DOI 10.1039/D0SC05439A REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.47 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 10964 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 577 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 811 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3480 REMARK 3 BIN FREE R VALUE SET COUNT : 42 REMARK 3 BIN FREE R VALUE : 0.3960 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1904 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 11 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 73.11 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.56000 REMARK 3 B22 (A**2) : 0.56000 REMARK 3 B33 (A**2) : -1.13000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.387 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.254 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.206 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.681 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1938 ; 0.011 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2614 ; 2.432 ; 1.638 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 236 ; 6.427 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 100 ;30.858 ;21.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 366 ;26.261 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;20.327 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 264 ; 0.188 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1440 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1 143 B 1 143 3608 0.090 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 15 REMARK 3 ORIGIN FOR THE GROUP (A): -20.7137 12.1974 -11.0873 REMARK 3 T TENSOR REMARK 3 T11: 0.1193 T22: 0.0409 REMARK 3 T33: 0.0735 T12: -0.0411 REMARK 3 T13: -0.0065 T23: 0.0423 REMARK 3 L TENSOR REMARK 3 L11: 12.5350 L22: 3.9306 REMARK 3 L33: 10.8999 L12: -1.5832 REMARK 3 L13: -7.2944 L23: 0.6304 REMARK 3 S TENSOR REMARK 3 S11: -0.6699 S12: -0.2207 S13: -0.7578 REMARK 3 S21: -0.0727 S22: 0.1854 S23: 0.1198 REMARK 3 S31: 0.3012 S32: 0.0487 S33: 0.4845 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 16 A 57 REMARK 3 ORIGIN FOR THE GROUP (A): -17.7585 13.8354 -15.7884 REMARK 3 T TENSOR REMARK 3 T11: 0.1093 T22: 0.2435 REMARK 3 T33: 0.0489 T12: -0.0281 REMARK 3 T13: -0.0503 T23: 0.0609 REMARK 3 L TENSOR REMARK 3 L11: 6.4882 L22: 7.2050 REMARK 3 L33: 3.9107 L12: 0.3692 REMARK 3 L13: -1.3294 L23: 2.3520 REMARK 3 S TENSOR REMARK 3 S11: -0.0671 S12: 0.6935 S13: -0.0972 REMARK 3 S21: -0.4401 S22: -0.0117 S23: 0.1411 REMARK 3 S31: -0.2154 S32: -0.3084 S33: 0.0788 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 58 A 87 REMARK 3 ORIGIN FOR THE GROUP (A): -14.1499 3.7730 -8.8089 REMARK 3 T TENSOR REMARK 3 T11: 0.1515 T22: 0.1629 REMARK 3 T33: 0.1628 T12: -0.0279 REMARK 3 T13: 0.0256 T23: -0.0411 REMARK 3 L TENSOR REMARK 3 L11: 1.9822 L22: 1.9705 REMARK 3 L33: 9.1588 L12: -0.7547 REMARK 3 L13: 0.8211 L23: -0.7252 REMARK 3 S TENSOR REMARK 3 S11: -0.0285 S12: 0.3153 S13: -0.4830 REMARK 3 S21: -0.1974 S22: 0.1724 S23: 0.1169 REMARK 3 S31: 1.0045 S32: 0.0070 S33: -0.1438 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 88 A 122 REMARK 3 ORIGIN FOR THE GROUP (A): -10.1301 -2.0911 -16.4247 REMARK 3 T TENSOR REMARK 3 T11: 1.1399 T22: 0.6328 REMARK 3 T33: 0.5893 T12: -0.1131 REMARK 3 T13: -0.0511 T23: -0.1234 REMARK 3 L TENSOR REMARK 3 L11: 2.4287 L22: 8.5377 REMARK 3 L33: 9.5268 L12: -2.3266 REMARK 3 L13: -1.3032 L23: 8.6327 REMARK 3 S TENSOR REMARK 3 S11: 0.5600 S12: 0.9260 S13: -0.6191 REMARK 3 S21: -0.0748 S22: -0.4802 S23: 0.0726 REMARK 3 S31: 0.6012 S32: -0.1226 S33: -0.0798 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 123 A 143 REMARK 3 ORIGIN FOR THE GROUP (A): -13.8679 21.8980 3.7113 REMARK 3 T TENSOR REMARK 3 T11: 0.1387 T22: 0.0927 REMARK 3 T33: 0.0698 T12: -0.0694 REMARK 3 T13: -0.0156 T23: 0.0087 REMARK 3 L TENSOR REMARK 3 L11: 5.6664 L22: 6.4097 REMARK 3 L33: 8.9319 L12: -3.5834 REMARK 3 L13: -4.1258 L23: 4.9431 REMARK 3 S TENSOR REMARK 3 S11: -0.1196 S12: -0.3836 S13: 0.3748 REMARK 3 S21: 0.3996 S22: 0.2575 S23: -0.0884 REMARK 3 S31: -0.4348 S32: 0.7488 S33: -0.1379 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 15 REMARK 3 ORIGIN FOR THE GROUP (A): -21.9109 13.4243 11.2868 REMARK 3 T TENSOR REMARK 3 T11: 0.0811 T22: 0.1226 REMARK 3 T33: 0.0786 T12: -0.0301 REMARK 3 T13: -0.0182 T23: 0.0315 REMARK 3 L TENSOR REMARK 3 L11: 2.5321 L22: 5.7428 REMARK 3 L33: 4.8675 L12: -1.1923 REMARK 3 L13: -0.2235 L23: 2.8636 REMARK 3 S TENSOR REMARK 3 S11: 0.1288 S12: -0.0213 S13: -0.0959 REMARK 3 S21: -0.2293 S22: -0.4488 S23: 0.3249 REMARK 3 S31: -0.0990 S32: -0.2435 S33: 0.3201 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 16 B 57 REMARK 3 ORIGIN FOR THE GROUP (A): -20.2448 16.3642 16.0262 REMARK 3 T TENSOR REMARK 3 T11: 0.2101 T22: 0.1095 REMARK 3 T33: 0.0490 T12: -0.0098 REMARK 3 T13: -0.0510 T23: 0.0431 REMARK 3 L TENSOR REMARK 3 L11: 7.5820 L22: 7.0156 REMARK 3 L33: 4.6989 L12: 0.5661 REMARK 3 L13: -3.0572 L23: 1.2586 REMARK 3 S TENSOR REMARK 3 S11: 0.0015 S12: -0.5578 S13: -0.1986 REMARK 3 S21: 0.6554 S22: -0.0973 S23: 0.1240 REMARK 3 S31: 0.3228 S32: 0.1715 S33: 0.0958 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 58 B 86 REMARK 3 ORIGIN FOR THE GROUP (A): -29.9812 19.9006 9.1034 REMARK 3 T TENSOR REMARK 3 T11: 0.1761 T22: 0.1410 REMARK 3 T33: 0.1391 T12: -0.0292 REMARK 3 T13: 0.0521 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 1.7441 L22: 2.4743 REMARK 3 L33: 9.3764 L12: -0.3903 REMARK 3 L13: 0.8956 L23: 0.0992 REMARK 3 S TENSOR REMARK 3 S11: 0.3094 S12: -0.2487 S13: -0.0321 REMARK 3 S21: 0.3716 S22: -0.0825 S23: 0.4560 REMARK 3 S31: -0.1253 S32: -1.0709 S33: -0.2269 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 87 B 115 REMARK 3 ORIGIN FOR THE GROUP (A): -40.4665 19.3611 14.8578 REMARK 3 T TENSOR REMARK 3 T11: 0.4344 T22: 0.3629 REMARK 3 T33: 0.3694 T12: 0.0413 REMARK 3 T13: -0.0113 T23: -0.0636 REMARK 3 L TENSOR REMARK 3 L11: 11.1924 L22: 1.9801 REMARK 3 L33: 9.0313 L12: 3.4377 REMARK 3 L13: 7.1695 L23: 0.1786 REMARK 3 S TENSOR REMARK 3 S11: 0.2211 S12: -0.3961 S13: -0.0612 REMARK 3 S21: 0.0268 S22: -0.1560 S23: -0.0054 REMARK 3 S31: 0.2676 S32: -0.2209 S33: -0.0651 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 116 B 143 REMARK 3 ORIGIN FOR THE GROUP (A): -17.8419 22.1293 1.8490 REMARK 3 T TENSOR REMARK 3 T11: 0.1641 T22: 0.0375 REMARK 3 T33: 0.0742 T12: -0.0505 REMARK 3 T13: -0.0259 T23: 0.0401 REMARK 3 L TENSOR REMARK 3 L11: 8.7737 L22: 4.0452 REMARK 3 L33: 9.6875 L12: -2.3704 REMARK 3 L13: -5.4998 L23: 2.2733 REMARK 3 S TENSOR REMARK 3 S11: 0.4391 S12: 0.1506 S13: 0.1171 REMARK 3 S21: -0.0637 S22: -0.1512 S23: -0.0757 REMARK 3 S31: -1.0120 S32: 0.0418 S33: -0.2880 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6M27 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1300015915. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.48644 REMARK 200 MONOCHROMATOR : NUMERICAL LINK TYPE SI(111) REMARK 200 DOUBLE CRYSTAL MONOCHROMATOR, REMARK 200 LIQUID NITROGEN COOLING REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11541 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 41.470 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.860 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.2600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.96 REMARK 200 R MERGE FOR SHELL (I) : 0.98900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.060 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2XWS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M AMMONIUM SULFATE, 0.3M NA REMARK 280 -FORMATE, 0.1M TRIS, 3 % (W/V) GAMMA-PGA, 5% (W/V) PEG 3350, PH REMARK 280 7.8, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.60500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 20.30250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 60.90750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 90 REMARK 465 HIS A 91 REMARK 465 GLU A 92 REMARK 465 HIS A 93 REMARK 465 HIS A 94 REMARK 465 HIS A 95 REMARK 465 GLU A 96 REMARK 465 HIS A 97 REMARK 465 SER A 98 REMARK 465 HIS A 99 REMARK 465 HIS A 100 REMARK 465 HIS A 101 REMARK 465 HIS A 102 REMARK 465 HIS A 103 REMARK 465 HIS A 104 REMARK 465 HIS A 105 REMARK 465 HIS A 106 REMARK 465 HIS A 107 REMARK 465 GLU A 108 REMARK 465 HIS A 109 REMARK 465 GLU A 110 REMARK 465 LYS A 111 REMARK 465 LEU A 112 REMARK 465 ASN B 90 REMARK 465 HIS B 91 REMARK 465 GLU B 92 REMARK 465 HIS B 93 REMARK 465 HIS B 94 REMARK 465 HIS B 95 REMARK 465 GLU B 96 REMARK 465 HIS B 97 REMARK 465 SER B 98 REMARK 465 HIS B 99 REMARK 465 HIS B 100 REMARK 465 HIS B 101 REMARK 465 HIS B 102 REMARK 465 HIS B 103 REMARK 465 HIS B 104 REMARK 465 HIS B 105 REMARK 465 HIS B 106 REMARK 465 HIS B 107 REMARK 465 GLU B 108 REMARK 465 HIS B 109 REMARK 465 GLU B 110 REMARK 465 LYS B 111 REMARK 465 LEU B 112 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 62 CB - CG - CD ANGL. DEV. = 17.1 DEGREES REMARK 500 ARG A 78 CG - CD - NE ANGL. DEV. = 15.5 DEGREES REMARK 500 ARG A 131 CG - CD - NE ANGL. DEV. = 15.7 DEGREES REMARK 500 ARG A 139 CB - CG - CD ANGL. DEV. = 17.3 DEGREES REMARK 500 ARG A 143 CB - CG - CD ANGL. DEV. = 20.2 DEGREES REMARK 500 ARG B 131 CG - CD - NE ANGL. DEV. = 18.3 DEGREES REMARK 500 ARG B 139 CB - CG - CD ANGL. DEV. = 17.1 DEGREES REMARK 500 ARG B 143 CB - CG - CD ANGL. DEV. = -19.2 DEGREES REMARK 500 ARG B 143 CG - CD - NE ANGL. DEV. = 13.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 43 -11.98 74.04 REMARK 500 ARG A 78 -68.86 -125.14 REMARK 500 GLU A 116 -75.88 81.51 REMARK 500 ASP A 117 41.07 -141.35 REMARK 500 PHE B 43 -9.69 74.47 REMARK 500 ARG B 78 -65.84 -128.13 REMARK 500 GLU B 116 -73.77 77.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 201 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 9 NE2 REMARK 620 2 HIS A 75 NE2 89.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 201 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 9 NE2 REMARK 620 2 HIS B 75 NE2 88.4 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI B 201 DBREF 6M27 A 1 143 UNP Q58380 CFBA_METJA 1 143 DBREF 6M27 B 1 143 UNP Q58380 CFBA_METJA 1 143 SEQRES 1 A 143 MET GLU ALA LEU VAL LEU VAL GLY HIS GLY SER ARG LEU SEQRES 2 A 143 PRO TYR SER LYS GLU LEU LEU VAL LYS LEU ALA GLU LYS SEQRES 3 A 143 VAL LYS GLU ARG ASN LEU PHE PRO ILE VAL GLU ILE GLY SEQRES 4 A 143 LEU MET GLU PHE SER GLU PRO THR ILE PRO GLN ALA VAL SEQRES 5 A 143 LYS LYS ALA ILE GLU GLN GLY ALA LYS ARG ILE ILE VAL SEQRES 6 A 143 VAL PRO VAL PHE LEU ALA HIS GLY ILE HIS THR THR ARG SEQRES 7 A 143 ASP ILE PRO ARG LEU LEU GLY LEU ILE GLU ASP ASN HIS SEQRES 8 A 143 GLU HIS HIS HIS GLU HIS SER HIS HIS HIS HIS HIS HIS SEQRES 9 A 143 HIS HIS HIS GLU HIS GLU LYS LEU GLU ILE PRO GLU ASP SEQRES 10 A 143 VAL GLU ILE ILE TYR ARG GLU PRO ILE GLY ALA ASP ASP SEQRES 11 A 143 ARG ILE VAL ASP ILE ILE ILE ASP ARG ALA PHE GLY ARG SEQRES 1 B 143 MET GLU ALA LEU VAL LEU VAL GLY HIS GLY SER ARG LEU SEQRES 2 B 143 PRO TYR SER LYS GLU LEU LEU VAL LYS LEU ALA GLU LYS SEQRES 3 B 143 VAL LYS GLU ARG ASN LEU PHE PRO ILE VAL GLU ILE GLY SEQRES 4 B 143 LEU MET GLU PHE SER GLU PRO THR ILE PRO GLN ALA VAL SEQRES 5 B 143 LYS LYS ALA ILE GLU GLN GLY ALA LYS ARG ILE ILE VAL SEQRES 6 B 143 VAL PRO VAL PHE LEU ALA HIS GLY ILE HIS THR THR ARG SEQRES 7 B 143 ASP ILE PRO ARG LEU LEU GLY LEU ILE GLU ASP ASN HIS SEQRES 8 B 143 GLU HIS HIS HIS GLU HIS SER HIS HIS HIS HIS HIS HIS SEQRES 9 B 143 HIS HIS HIS GLU HIS GLU LYS LEU GLU ILE PRO GLU ASP SEQRES 10 B 143 VAL GLU ILE ILE TYR ARG GLU PRO ILE GLY ALA ASP ASP SEQRES 11 B 143 ARG ILE VAL ASP ILE ILE ILE ASP ARG ALA PHE GLY ARG HET NI A 201 1 HET NI B 201 1 HETNAM NI NICKEL (II) ION FORMUL 3 NI 2(NI 2+) FORMUL 5 HOH *11(H2 O) HELIX 1 AA1 PRO A 14 GLU A 29 1 16 HELIX 2 AA2 THR A 47 GLN A 58 1 12 HELIX 3 AA3 GLY A 73 ARG A 78 1 6 HELIX 4 AA4 ARG A 78 LEU A 84 1 7 HELIX 5 AA5 ASP A 129 PHE A 141 1 13 HELIX 6 AA6 PRO B 14 ARG B 30 1 17 HELIX 7 AA7 THR B 47 GLN B 58 1 12 HELIX 8 AA8 GLY B 73 ARG B 78 1 6 HELIX 9 AA9 ARG B 78 LEU B 84 1 7 HELIX 10 AB1 ASP B 129 PHE B 141 1 13 SHEET 1 AA1 4 ILE A 35 LEU A 40 0 SHEET 2 AA1 4 GLU A 2 GLY A 8 1 N LEU A 6 O GLU A 37 SHEET 3 AA1 4 ARG A 62 PRO A 67 1 O ILE A 64 N ALA A 3 SHEET 4 AA1 4 GLU A 119 TYR A 122 1 O ILE A 121 N ILE A 63 SHEET 1 AA2 4 ILE B 35 LEU B 40 0 SHEET 2 AA2 4 GLU B 2 GLY B 8 1 N LEU B 6 O GLU B 37 SHEET 3 AA2 4 ARG B 62 PRO B 67 1 O ILE B 64 N ALA B 3 SHEET 4 AA2 4 GLU B 119 TYR B 122 1 O ILE B 121 N ILE B 63 LINK NE2 HIS A 9 NI NI A 201 1555 1555 2.02 LINK NE2 HIS A 75 NI NI A 201 1555 1555 2.04 LINK NE2 HIS B 9 NI NI B 201 1555 1555 2.03 LINK NE2 HIS B 75 NI NI B 201 1555 1555 2.05 CISPEP 1 GLU A 45 PRO A 46 0 -0.31 CISPEP 2 GLU B 45 PRO B 46 0 -0.96 SITE 1 AC1 3 HIS A 9 GLU A 42 HIS A 75 SITE 1 AC2 3 HIS B 9 GLU B 42 HIS B 75 CRYST1 68.210 68.210 81.210 90.00 90.00 90.00 P 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014661 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014661 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012314 0.00000