HEADER MEMBRANE PROTEIN 02-MAR-20 6M31 TITLE STRUCTURAL AND FUNCTIONAL INSIGHTS INTO AN ARCHAEAL LIPID SYNTHASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIGERANYLGERANYLGLYCERYL PHOSPHATE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DGGGPS,(S)-2,3-DI-O-GERANYLGERANYLGLYCERYL PHOSPHATE COMPND 5 SYNTHASE,GERANYLGERANYLGLYCEROL-PHOSPHATE GERANYLGERANYLTRANSFERASE; COMPND 6 EC: 2.5.1.42; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII DSM 2661; SOURCE 3 ORGANISM_TAXID: 243232; SOURCE 4 STRAIN: DSM 2661; SOURCE 5 GENE: MJ0279; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI ATCC 8739; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 481805; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ATCC 8739 KEYWDS LIPID, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.REN,W.CHENG REVDAT 4 29-MAY-24 6M31 1 REMARK REVDAT 3 17-AUG-22 6M31 1 AUTHOR JRNL REVDAT 2 18-AUG-21 6M31 1 TITLE REVDAT 1 03-FEB-21 6M31 0 JRNL AUTH S.REN,N.A.DE KOK,Y.GU,W.YAN,Q.SUN,Y.CHEN,J.HE,L.TIAN, JRNL AUTH 2 R.L.ANDRINGA,X.ZHU,M.TANG,S.QI,H.XU,H.REN,X.FU,A.J.MINNAARD, JRNL AUTH 3 S.YANG,W.ZHANG,W.LI,Y.WEI,A.J.DRIESSEN,W.CHENG JRNL TITL STRUCTURAL AND FUNCTIONAL INSIGHTS INTO AN ARCHAEAL LIPID JRNL TITL 2 SYNTHASE JRNL REF CELL REP V. 33 08294 2020 JRNL REFN ESSN 2211-1247 JRNL DOI 10.1016/J.CELREP.2020.108294 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELX REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : NULL REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE (F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4448 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 845 REMARK 3 SOLVENT ATOMS : 43 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : NULL REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : NULL REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : NULL REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : NULL REMARK 3 NUMBER OF RESTRAINTS : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 ANGLE DISTANCES (A) : NULL REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : NULL REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : NULL REMARK 3 ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : NULL REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : NULL REMARK 3 SIMILAR ADP COMPONENTS (A**2) : NULL REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : NULL REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6M31 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1300015934. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAY-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 R 1M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33780 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.290 REMARK 200 RESOLUTION RANGE LOW (A) : 48.890 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.904 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.29 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.97 REMARK 200 R MERGE FOR SHELL (I) : 0.77300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.630 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM NACL, 20% (W/V) PEG500, AND 200 REMARK 280 MM TRIS-HCL (PH 8.0)., LIPIDIC CUBIC PHASE, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 35.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 66.74500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 66.74500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 VAL A 3 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 VAL B 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 107 -73.77 -96.71 REMARK 500 LYS A 128 -31.02 -147.67 REMARK 500 TYR A 132 79.74 -106.04 REMARK 500 LYS A 189 30.87 -84.78 REMARK 500 LYS A 282 58.14 -145.50 REMARK 500 ILE B 107 -73.41 -96.80 REMARK 500 LYS B 128 -31.15 -147.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 315 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 63 O REMARK 620 2 ASP A 70 OD2 111.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 315 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 63 O REMARK 620 2 ASP B 70 OD2 112.5 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LDA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LDA A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LDA A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LDA A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LDA A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LDA A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LDA A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LDA A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LDA A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LDA A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LDA A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 314 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 315 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPG A 316 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPG A 317 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPG A 318 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPG A 319 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPG A 320 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPG A 321 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPG A 322 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPG A 323 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPG A 324 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPG A 325 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPG A 326 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPG A 327 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPG A 328 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LDA B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LDA B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LDA B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LDA B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LDA B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LDA B 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LDA B 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LDA B 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AG1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LDA B 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AG2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LDA B 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AG3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LDA B 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AG4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LDA B 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AG5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: AG6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 314 REMARK 800 REMARK 800 SITE_IDENTIFIER: AG7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 315 REMARK 800 REMARK 800 SITE_IDENTIFIER: AG8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPG B 316 REMARK 800 REMARK 800 SITE_IDENTIFIER: AG9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPG B 317 REMARK 800 REMARK 800 SITE_IDENTIFIER: AH1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPG B 318 REMARK 800 REMARK 800 SITE_IDENTIFIER: AH2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPG B 319 REMARK 800 REMARK 800 SITE_IDENTIFIER: AH3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPG B 320 DBREF 6M31 A 1 283 UNP Q57727 DGGGP_METJA 1 283 DBREF 6M31 B 1 283 UNP Q57727 DGGGP_METJA 1 283 SEQRES 1 A 283 MET GLY VAL PHE MET GLU LYS LEU LYS THR TYR LEU GLU SEQRES 2 A 283 LEU ILE ARG VAL LYS ASN CYS ILE THR ALA SER ILE GLY SEQRES 3 A 283 GLY ILE ILE GLY TYR LEU ILE SER SER ASN PHE GLU ILE SEQRES 4 A 283 ASP ILE LEU LYS SER LEU LEU VAL PHE PHE VAL VAL PHE SEQRES 5 A 283 PHE VAL CYS ALA TYR GLY ASN VAL ILE ASN ASP ILE PHE SEQRES 6 A 283 ASP ILE GLU ILE ASP ARG ILE ASN LYS PRO SER ARG PRO SEQRES 7 A 283 LEU PRO SER GLY LYS ILE LYS LEU ASN GLU ALA LYS LYS SEQRES 8 A 283 PHE SER ALA ILE LEU LEU ILE LEU GLY LEU VAL LEU SER SEQRES 9 A 283 LEU PHE ILE ASN ILE TYR ALA LEU ILE ILE ALA VAL ILE SEQRES 10 A 283 ASN ALA LEU PHE LEU TYR LEU TYR ALA LYS LYS TYR LYS SEQRES 11 A 283 LYS TYR LYS PRO ILE GLY ASN PHE ILE ILE GLY TYR LEU SEQRES 12 A 283 THR GLY SER VAL PHE LEU PHE GLY GLY VAL ALA GLY LYS SEQRES 13 A 283 ASN VAL MET PRO VAL VAL ILE LEU PHE LEU CYS SER LEU SEQRES 14 A 283 LEU SER ILE TRP GLY ARG GLU ILE VAL LYS ASP PHE GLU SEQRES 15 A 283 ASP MET GLU GLY ASP LYS LYS GLU GLY VAL ILE SER LEU SEQRES 16 A 283 PRO ILE LYS TYR GLY LYS LYS SER LEU TYR PHE ALA THR SEQRES 17 A 283 PHE LEU VAL VAL LEU ALA VAL ILE LEU SER PRO LEU PRO SEQRES 18 A 283 TYR ILE LEU LYS ILE PHE GLY ILE TRP TYR LEU ILE LEU SEQRES 19 A 283 ILE ALA ILE CYS ASP ILE LEU PHE ILE TYR ALA MET ALA SEQRES 20 A 283 LEU LEU LEU LYS GLU PRO ASN LYS GLU THR ALA SER LYS SEQRES 21 A 283 VAL SER LYS PHE LEU LYS ILE ILE MET ASN ILE VAL LEU SEQRES 22 A 283 LEU ALA PHE ILE VAL GLY ALA ILE LYS LEU SEQRES 1 B 283 MET GLY VAL PHE MET GLU LYS LEU LYS THR TYR LEU GLU SEQRES 2 B 283 LEU ILE ARG VAL LYS ASN CYS ILE THR ALA SER ILE GLY SEQRES 3 B 283 GLY ILE ILE GLY TYR LEU ILE SER SER ASN PHE GLU ILE SEQRES 4 B 283 ASP ILE LEU LYS SER LEU LEU VAL PHE PHE VAL VAL PHE SEQRES 5 B 283 PHE VAL CYS ALA TYR GLY ASN VAL ILE ASN ASP ILE PHE SEQRES 6 B 283 ASP ILE GLU ILE ASP ARG ILE ASN LYS PRO SER ARG PRO SEQRES 7 B 283 LEU PRO SER GLY LYS ILE LYS LEU ASN GLU ALA LYS LYS SEQRES 8 B 283 PHE SER ALA ILE LEU LEU ILE LEU GLY LEU VAL LEU SER SEQRES 9 B 283 LEU PHE ILE ASN ILE TYR ALA LEU ILE ILE ALA VAL ILE SEQRES 10 B 283 ASN ALA LEU PHE LEU TYR LEU TYR ALA LYS LYS TYR LYS SEQRES 11 B 283 LYS TYR LYS PRO ILE GLY ASN PHE ILE ILE GLY TYR LEU SEQRES 12 B 283 THR GLY SER VAL PHE LEU PHE GLY GLY VAL ALA GLY LYS SEQRES 13 B 283 ASN VAL MET PRO VAL VAL ILE LEU PHE LEU CYS SER LEU SEQRES 14 B 283 LEU SER ILE TRP GLY ARG GLU ILE VAL LYS ASP PHE GLU SEQRES 15 B 283 ASP MET GLU GLY ASP LYS LYS GLU GLY VAL ILE SER LEU SEQRES 16 B 283 PRO ILE LYS TYR GLY LYS LYS SER LEU TYR PHE ALA THR SEQRES 17 B 283 PHE LEU VAL VAL LEU ALA VAL ILE LEU SER PRO LEU PRO SEQRES 18 B 283 TYR ILE LEU LYS ILE PHE GLY ILE TRP TYR LEU ILE LEU SEQRES 19 B 283 ILE ALA ILE CYS ASP ILE LEU PHE ILE TYR ALA MET ALA SEQRES 20 B 283 LEU LEU LEU LYS GLU PRO ASN LYS GLU THR ALA SER LYS SEQRES 21 B 283 VAL SER LYS PHE LEU LYS ILE ILE MET ASN ILE VAL LEU SEQRES 22 B 283 LEU ALA PHE ILE VAL GLY ALA ILE LYS LEU HET LDA A 301 16 HET LDA A 302 16 HET LDA A 303 16 HET LDA A 304 16 HET LDA A 305 16 HET LDA A 306 16 HET LDA A 307 16 HET LDA A 308 16 HET LDA A 309 16 HET LDA A 310 16 HET LDA A 311 16 HET PO4 A 312 5 HET PO4 A 313 5 HET PO4 A 314 5 HET MG A 315 1 HET MPG A 316 25 HET MPG A 317 25 HET MPG A 318 25 HET MPG A 319 25 HET MPG A 320 25 HET MPG A 321 25 HET MPG A 322 25 HET MPG A 323 25 HET MPG A 324 25 HET MPG A 325 25 HET MPG A 326 25 HET MPG A 327 25 HET MPG A 328 25 HET LDA B 301 16 HET LDA B 302 16 HET LDA B 303 16 HET LDA B 304 16 HET LDA B 305 16 HET LDA B 306 16 HET LDA B 307 16 HET LDA B 308 16 HET LDA B 309 16 HET LDA B 310 16 HET LDA B 311 16 HET LDA B 312 16 HET PO4 B 313 5 HET PO4 B 314 5 HET MG B 315 1 HET MPG B 316 25 HET MPG B 317 25 HET MPG B 318 25 HET MPG B 319 25 HET MPG B 320 25 HETNAM LDA LAURYL DIMETHYLAMINE-N-OXIDE HETNAM PO4 PHOSPHATE ION HETNAM MG MAGNESIUM ION HETNAM MPG [(Z)-OCTADEC-9-ENYL] (2R)-2,3-BIS(OXIDANYL)PROPANOATE FORMUL 3 LDA 23(C14 H31 N O) FORMUL 14 PO4 5(O4 P 3-) FORMUL 17 MG 2(MG 2+) FORMUL 18 MPG 18(C21 H40 O4) FORMUL 51 HOH *43(H2 O) HELIX 1 AA1 PHE A 4 ILE A 15 1 12 HELIX 2 AA2 ARG A 16 ASN A 36 1 21 HELIX 3 AA3 ASP A 40 ASP A 66 1 27 HELIX 4 AA4 ASP A 66 ASN A 73 1 8 HELIX 5 AA5 LYS A 85 LEU A 105 1 21 HELIX 6 AA6 ASN A 108 LYS A 128 1 21 HELIX 7 AA7 TYR A 132 VAL A 153 1 22 HELIX 8 AA8 VAL A 158 ASP A 183 1 26 HELIX 9 AA9 ASP A 183 LYS A 189 1 7 HELIX 10 AB1 SER A 194 GLY A 200 1 7 HELIX 11 AB2 LYS A 202 SER A 218 1 17 HELIX 12 AB3 PRO A 219 LEU A 224 1 6 HELIX 13 AB4 GLY A 228 GLU A 252 1 25 HELIX 14 AB5 ASN A 254 ILE A 281 1 28 HELIX 15 AB6 MET B 5 ILE B 15 1 11 HELIX 16 AB7 ARG B 16 ASN B 36 1 21 HELIX 17 AB8 ASP B 40 ASP B 66 1 27 HELIX 18 AB9 ASP B 66 LYS B 74 1 9 HELIX 19 AC1 LYS B 85 LEU B 105 1 21 HELIX 20 AC2 ASN B 108 LYS B 128 1 21 HELIX 21 AC3 TYR B 132 VAL B 153 1 22 HELIX 22 AC4 VAL B 158 ASP B 183 1 26 HELIX 23 AC5 ASP B 183 LYS B 189 1 7 HELIX 24 AC6 SER B 194 TYR B 199 1 6 HELIX 25 AC7 LYS B 202 SER B 218 1 17 HELIX 26 AC8 PRO B 219 LEU B 224 1 6 HELIX 27 AC9 GLY B 228 GLU B 252 1 25 HELIX 28 AD1 ASN B 254 LYS B 282 1 29 LINK O ASP A 63 MG MG A 315 1555 1555 2.80 LINK OD2 ASP A 70 MG MG A 315 1555 1555 2.68 LINK O ASP B 63 MG MG B 315 1555 1555 2.92 LINK OD2 ASP B 70 MG MG B 315 1555 1555 2.85 SITE 1 AC1 2 THR A 22 THR A 144 SITE 1 AC2 9 PRO A 134 TRP A 173 TYR A 199 SER A 203 SITE 2 AC2 9 TRP A 230 LDA A 309 MPG A 318 HOH A 406 SITE 3 AC2 9 LEU B 42 SITE 1 AC3 2 LEU A 42 MPG A 317 SITE 1 AC4 1 ILE A 41 SITE 1 AC5 1 LDA B 310 SITE 1 AC6 3 TYR A 110 TYR A 142 LDA A 308 SITE 1 AC7 4 TYR A 57 LEU A 97 LEU A 120 TYR A 123 SITE 1 AC8 5 TYR A 110 LDA A 306 LDA A 311 MPG A 328 SITE 2 AC8 5 PHE B 4 SITE 1 AC9 5 TYR A 132 PRO A 134 TRP A 230 LDA A 302 SITE 2 AC9 5 LDA B 306 SITE 1 AD1 3 LYS A 90 ALA A 94 ILE A 98 SITE 1 AD2 6 ASN A 157 VAL A 158 MET A 159 LDA A 308 SITE 2 AD2 6 MPG A 328 PHE B 4 SITE 1 AD3 3 ARG A 16 LYS A 74 ARG A 77 SITE 1 AD4 4 ARG A 175 LYS A 179 LYS A 266 MPG A 323 SITE 1 AD5 5 ASN A 62 ASP A 66 ASP A 70 LYS A 74 SITE 2 AD5 5 LYS A 130 SITE 1 AD6 5 ASP A 63 ASP A 70 LEU A 79 PRO A 80 SITE 2 AD6 5 HOH A 415 SITE 1 AD7 5 LEU A 105 PHE A 106 ILE A 107 MPG A 317 SITE 2 AD7 5 MPG A 320 SITE 1 AD8 5 LEU A 45 PHE A 106 LDA A 303 MPG A 316 SITE 2 AD8 5 MPG A 326 SITE 1 AD9 6 TYR A 205 PHE A 206 PHE A 209 LDA A 302 SITE 2 AD9 6 LYS B 43 PHE B 106 SITE 1 AE1 6 LEU A 12 ARG A 16 VAL A 17 LYS A 18 SITE 2 AE1 6 MPG A 325 LDA B 308 SITE 1 AE2 5 LEU A 105 ASN A 108 ILE A 109 TYR A 244 SITE 2 AE2 5 MPG A 316 SITE 1 AE3 5 TYR A 205 LEU B 105 PHE B 106 ILE B 107 SITE 2 AE3 5 MPG B 316 SITE 1 AE4 6 ILE A 223 LEU A 224 TYR B 11 PHE B 52 SITE 2 AE4 6 GLU B 88 ILE B 95 SITE 1 AE5 13 ILE A 140 CYS A 167 SER A 168 SER A 171 SITE 2 AE5 13 ARG A 175 GLU A 176 LYS A 179 ALA A 214 SITE 3 AE5 13 SER A 218 ASP A 239 PHE A 242 MET A 269 SITE 4 AE5 13 PO4 A 313 SITE 1 AE6 8 ARG A 16 VAL A 54 ASN A 59 ASN A 62 SITE 2 AE6 8 ASN A 118 TYR A 125 THR A 144 PHE A 150 SITE 1 AE7 8 ILE A 28 ILE A 41 SER A 44 LEU A 45 SITE 2 AE7 8 PHE A 48 MPG A 319 ILE B 267 ASN B 270 SITE 1 AE8 7 TYR A 11 PHE A 52 GLU A 88 LYS A 91 SITE 2 AE8 7 PHE A 92 LEU A 99 MPG A 317 SITE 1 AE9 4 ILE A 28 ASN A 270 LDA B 310 MPG B 319 SITE 1 AF1 9 TYR A 110 VAL A 153 GLY A 155 LYS A 156 SITE 2 AF1 9 VAL A 158 ILE A 271 LDA A 308 LDA A 311 SITE 3 AF1 9 MPG B 317 SITE 1 AF2 6 TYR B 110 VAL B 153 GLY B 155 VAL B 158 SITE 2 AF2 6 PHE B 165 LDA B 309 SITE 1 AF3 3 THR B 22 GLY B 26 THR B 144 SITE 1 AF4 2 TYR B 57 ALA B 119 SITE 1 AF5 1 MPG B 319 SITE 1 AF6 2 PHE B 264 LDA B 308 SITE 1 AF7 4 LEU A 210 LDA A 309 ASP B 40 ILE B 41 SITE 1 AF8 3 PHE B 48 PHE B 49 MPG B 319 SITE 1 AF9 3 MPG A 319 ILE B 271 LDA B 305 SITE 1 AG1 5 LYS B 156 ASN B 157 VAL B 158 MET B 159 SITE 2 AG1 5 LDA B 301 SITE 1 AG2 4 LDA A 305 MPG A 327 LYS B 266 ASN B 270 SITE 1 AG3 2 LEU B 224 LYS B 225 SITE 1 AG4 4 ILE A 223 LYS B 91 ILE B 98 PO4 B 314 SITE 1 AG5 3 ARG B 16 LYS B 74 ARG B 77 SITE 1 AG6 5 LYS A 127 LYS A 225 LYS B 91 LDA B 312 SITE 2 AG6 5 HOH B 408 SITE 1 AG7 5 ASP B 63 ASP B 70 LEU B 79 PRO B 80 SITE 2 AG7 5 HOH B 407 SITE 1 AG8 4 MPG A 321 LEU B 105 ASN B 108 ILE B 109 SITE 1 AG9 5 MPG A 328 LEU B 12 ARG B 16 LYS B 18 SITE 2 AG9 5 ASN B 19 SITE 1 AH1 7 SER B 168 SER B 171 ARG B 175 LYS B 179 SITE 2 AH1 7 PHE B 242 LYS B 266 VAL B 272 SITE 1 AH2 4 MPG A 327 ASN B 270 LDA B 304 LDA B 307 SITE 1 AH3 8 ARG B 16 VAL B 54 ASN B 59 ASN B 62 SITE 2 AH3 8 ASN B 118 LEU B 143 THR B 144 PHE B 150 CRYST1 70.000 133.490 79.500 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014286 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007491 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012579 0.00000