data_6M3D # _entry.id 6M3D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6M3D pdb_00006m3d 10.2210/pdb6m3d/pdb WWPDB D_1300015997 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6M3D _pdbx_database_status.recvd_initial_deposition_date 2020-03-03 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Sunami, T.' 1 0000-0001-9155-5009 'Hirano, Y.' 2 0000-0002-3007-6052 'Tamada, T.' 3 0000-0003-1419-8022 'Kono, H.' 4 0000-0001-5729-8707 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Acta Crystallogr D Struct Biol' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2059-7983 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 76 _citation.language ? _citation.page_first 824 _citation.page_last 833 _citation.title 'Structural basis for designing an array of engrailed homeodomains.' _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1107/S2059798320009237 _citation.pdbx_database_id_PubMed 32876058 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sunami, T.' 1 0000-0001-9155-5009 primary 'Hirano, Y.' 2 0000-0002-3007-6052 primary 'Tamada, T.' 3 0000-0003-1419-8022 primary 'Kono, H.' 4 0000-0001-5729-8707 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 106.447 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 6M3D _cell.details ? _cell.formula_units_Z ? _cell.length_a 39.798 _cell.length_a_esd ? _cell.length_b 61.437 _cell.length_b_esd ? _cell.length_c 39.976 _cell.length_c_esd ? _cell.volume 93744.618 _cell.volume_esd ? _cell.Z_PDB 2 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6M3D _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*TP*AP*AP*TP*CP*CP*TP*AP*AP*TP*CP*C)-3') ; 3581.368 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*GP*GP*AP*TP*TP*AP*GP*GP*AP*TP*TP*A)-3') ; 3741.464 1 ? ? ? ? 3 polymer man 'Segmentation polarity homeobox protein engrailed,Segmentation polarity homeobox protein engrailed' 17344.592 1 ? Q503K,R506A ? 'the fusion protein of EHD (UNP RESIDUES 453-512), linkers GGGGG, EHD (UNP RESIDUES 453-512)' 4 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 5 water nat water 18.015 207 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DT)(DA)(DA)(DT)(DC)(DC)(DT)(DA)(DA)(DT)(DC)(DC)' TAATCCTAATCC A ? 2 polydeoxyribonucleotide no no '(DG)(DG)(DA)(DT)(DT)(DA)(DG)(DG)(DA)(DT)(DT)(DA)' GGATTAGGATTA B ? 3 'polypeptide(L)' no no ;MGSSHHHHHHAIEDLYFQSPGDEKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKAAKIKK SGGGGGDEKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKAAKIKKSGT ; ;MGSSHHHHHHAIEDLYFQSPGDEKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKAAKIKK SGGGGGDEKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKAAKIKKSGT ; C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DA n 1 3 DA n 1 4 DT n 1 5 DC n 1 6 DC n 1 7 DT n 1 8 DA n 1 9 DA n 1 10 DT n 1 11 DC n 1 12 DC n 2 1 DG n 2 2 DG n 2 3 DA n 2 4 DT n 2 5 DT n 2 6 DA n 2 7 DG n 2 8 DG n 2 9 DA n 2 10 DT n 2 11 DT n 2 12 DA n 3 1 MET n 3 2 GLY n 3 3 SER n 3 4 SER n 3 5 HIS n 3 6 HIS n 3 7 HIS n 3 8 HIS n 3 9 HIS n 3 10 HIS n 3 11 ALA n 3 12 ILE n 3 13 GLU n 3 14 ASP n 3 15 LEU n 3 16 TYR n 3 17 PHE n 3 18 GLN n 3 19 SER n 3 20 PRO n 3 21 GLY n 3 22 ASP n 3 23 GLU n 3 24 LYS n 3 25 ARG n 3 26 PRO n 3 27 ARG n 3 28 THR n 3 29 ALA n 3 30 PHE n 3 31 SER n 3 32 SER n 3 33 GLU n 3 34 GLN n 3 35 LEU n 3 36 ALA n 3 37 ARG n 3 38 LEU n 3 39 LYS n 3 40 ARG n 3 41 GLU n 3 42 PHE n 3 43 ASN n 3 44 GLU n 3 45 ASN n 3 46 ARG n 3 47 TYR n 3 48 LEU n 3 49 THR n 3 50 GLU n 3 51 ARG n 3 52 ARG n 3 53 ARG n 3 54 GLN n 3 55 GLN n 3 56 LEU n 3 57 SER n 3 58 SER n 3 59 GLU n 3 60 LEU n 3 61 GLY n 3 62 LEU n 3 63 ASN n 3 64 GLU n 3 65 ALA n 3 66 GLN n 3 67 ILE n 3 68 LYS n 3 69 ILE n 3 70 TRP n 3 71 PHE n 3 72 LYS n 3 73 ASN n 3 74 LYS n 3 75 ALA n 3 76 ALA n 3 77 LYS n 3 78 ILE n 3 79 LYS n 3 80 LYS n 3 81 SER n 3 82 GLY n 3 83 GLY n 3 84 GLY n 3 85 GLY n 3 86 GLY n 3 87 ASP n 3 88 GLU n 3 89 LYS n 3 90 ARG n 3 91 PRO n 3 92 ARG n 3 93 THR n 3 94 ALA n 3 95 PHE n 3 96 SER n 3 97 SER n 3 98 GLU n 3 99 GLN n 3 100 LEU n 3 101 ALA n 3 102 ARG n 3 103 LEU n 3 104 LYS n 3 105 ARG n 3 106 GLU n 3 107 PHE n 3 108 ASN n 3 109 GLU n 3 110 ASN n 3 111 ARG n 3 112 TYR n 3 113 LEU n 3 114 THR n 3 115 GLU n 3 116 ARG n 3 117 ARG n 3 118 ARG n 3 119 GLN n 3 120 GLN n 3 121 LEU n 3 122 SER n 3 123 SER n 3 124 GLU n 3 125 LEU n 3 126 GLY n 3 127 LEU n 3 128 ASN n 3 129 GLU n 3 130 ALA n 3 131 GLN n 3 132 ILE n 3 133 LYS n 3 134 ILE n 3 135 TRP n 3 136 PHE n 3 137 LYS n 3 138 ASN n 3 139 LYS n 3 140 ALA n 3 141 ALA n 3 142 LYS n 3 143 ILE n 3 144 LYS n 3 145 LYS n 3 146 SER n 3 147 GLY n 3 148 THR n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 3 1 sample 'Biological sequence' 1 86 'Fruit fly' ? 'en, CG9015' ? ? ? ? ? ? 'Drosophila melanogaster' 7227 ? ? ? ? ? ? ? ? 'Escherichia coli BL21' 511693 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 3 2 sample 'Biological sequence' 87 148 'Fruit fly' ? 'en, CG9015' ? ? ? ? ? ? 'Drosophila melanogaster' 7227 ? ? ? ? ? ? ? ? 'Escherichia coli BL21' 511693 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 12 'synthetic construct' ? 32630 ? 2 1 sample 1 12 'synthetic construct' ? 32630 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 6M3D 6M3D ? 1 ? 1 2 PDB 6M3D 6M3D ? 2 ? 1 3 UNP HMEN_DROME P02836 ? 3 DEKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNKRAKIKKS 453 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6M3D A 1 ? 12 ? 6M3D 1 ? 12 ? 1 12 2 2 6M3D B 1 ? 12 ? 6M3D 1 ? 12 ? 1 12 3 3 6M3D C 22 ? 81 ? P02836 453 ? 512 ? 22 81 4 3 6M3D C 87 ? 146 ? P02836 453 ? 512 ? 87 146 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 3 6M3D MET C 1 ? UNP P02836 ? ? 'initiating methionine' 1 1 3 6M3D GLY C 2 ? UNP P02836 ? ? 'expression tag' 2 2 3 6M3D SER C 3 ? UNP P02836 ? ? 'expression tag' 3 3 3 6M3D SER C 4 ? UNP P02836 ? ? 'expression tag' 4 4 3 6M3D HIS C 5 ? UNP P02836 ? ? 'expression tag' 5 5 3 6M3D HIS C 6 ? UNP P02836 ? ? 'expression tag' 6 6 3 6M3D HIS C 7 ? UNP P02836 ? ? 'expression tag' 7 7 3 6M3D HIS C 8 ? UNP P02836 ? ? 'expression tag' 8 8 3 6M3D HIS C 9 ? UNP P02836 ? ? 'expression tag' 9 9 3 6M3D HIS C 10 ? UNP P02836 ? ? 'expression tag' 10 10 3 6M3D ALA C 11 ? UNP P02836 ? ? 'expression tag' 11 11 3 6M3D ILE C 12 ? UNP P02836 ? ? 'expression tag' 12 12 3 6M3D GLU C 13 ? UNP P02836 ? ? 'expression tag' 13 13 3 6M3D ASP C 14 ? UNP P02836 ? ? 'expression tag' 14 14 3 6M3D LEU C 15 ? UNP P02836 ? ? 'expression tag' 15 15 3 6M3D TYR C 16 ? UNP P02836 ? ? 'expression tag' 16 16 3 6M3D PHE C 17 ? UNP P02836 ? ? 'expression tag' 17 17 3 6M3D GLN C 18 ? UNP P02836 ? ? 'expression tag' 18 18 3 6M3D SER C 19 ? UNP P02836 ? ? 'expression tag' 19 19 3 6M3D PRO C 20 ? UNP P02836 ? ? 'expression tag' 20 20 3 6M3D GLY C 21 ? UNP P02836 ? ? 'expression tag' 21 21 3 6M3D LYS C 72 ? UNP P02836 GLN 503 'engineered mutation' 72 22 3 6M3D ALA C 75 ? UNP P02836 ARG 506 'engineered mutation' 75 23 3 6M3D GLY C 82 ? UNP P02836 ? ? linker 82 24 3 6M3D GLY C 83 ? UNP P02836 ? ? linker 83 25 3 6M3D GLY C 84 ? UNP P02836 ? ? linker 84 26 3 6M3D GLY C 85 ? UNP P02836 ? ? linker 85 27 3 6M3D GLY C 86 ? UNP P02836 ? ? linker 86 28 4 6M3D LYS C 137 ? UNP P02836 GLN 503 'engineered mutation' 137 29 4 6M3D ALA C 140 ? UNP P02836 ARG 506 'engineered mutation' 140 30 4 6M3D GLY C 147 ? UNP P02836 ? ? 'expression tag' 147 31 4 6M3D THR C 148 ? UNP P02836 ? ? 'expression tag' 148 32 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6M3D _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.90 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 35.27 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '8% (w/v) PEG 4000, 0.1 M sodium acetate' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2018-06-18 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.98 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'PHOTON FACTORY BEAMLINE BL-17A' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.98 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL-17A _diffrn_source.pdbx_synchrotron_site 'Photon Factory' # _reflns.B_iso_Wilson_estimate 23.1623401697 _reflns.entry_id 6M3D _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.60 _reflns.d_resolution_low 38.17 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 24423 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 3.4 _reflns.pdbx_Rmerge_I_obs 0.025 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 15.7 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.034 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.60 _reflns_shell.d_res_low 1.63 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.2 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1183 _reflns_shell.percent_possible_all 100.0 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.252 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 3.5 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.338 _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.921 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 26.5017300563 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6M3D _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.60000 _refine.ls_d_res_low 38.170 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 24342 _refine.ls_number_reflns_R_free 1204 _refine.ls_number_reflns_R_work 23138 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.6805896806 _refine.ls_percent_reflns_R_free 4.94618355106 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.190614050402 _refine.ls_R_factor_R_free 0.235863688164 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.18834877636 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.40888796396 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 2HDD _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 23.6012510998 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.174027637387 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 1.60000 _refine_hist.d_res_low 38.170 _refine_hist.number_atoms_solvent 207 _refine_hist.number_atoms_total 1607 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 913 _refine_hist.pdbx_number_atoms_nucleic_acid 486 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.00708185555911 ? 2150 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.00456025375 ? 3100 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0473394368983 ? 335 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.00633961639965 ? 237 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 26.9104934855 ? 1167 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.600 1.6641 . . 138 2537 98.7449243263 . . . 0.260917790066 . 0.214746048894 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.6641 1.7398 . . 129 2548 99.4797473058 . . . 0.295591322971 . 0.205694203899 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.7398 1.8315 . . 160 2533 99.8146775389 . . . 0.228656796119 . 0.207546942891 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.8315 1.9463 . . 126 2561 99.962797619 . . . 0.339089190229 . 0.217402695221 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.9463 2.0965 . . 147 2567 99.8895841001 . . . 0.244187118012 . 0.210546401923 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.0965 2.3075 . . 124 2576 99.9629766753 . . . 0.215889848791 . 0.198025572265 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.3075 2.6413 . . 116 2601 99.8897058824 . . . 0.265470051122 . 0.209149670517 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.6413 3.3275 . . 116 2598 99.3775173929 . . . 0.281811257375 . 0.196610975121 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.3275 38.17 . . 148 2617 100.0 . . . 0.193145976613 . 0.161290888192 . . . . . . . . . . . # _struct.entry_id 6M3D _struct.title 'X-ray crystal structure of tandemly connected engrailed homeodomains (EHD) with R53A mutations and DNA complex' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6M3D _struct_keywords.text 'HOMEODOMAIN FOLD, PROTEIN-DNA COMPLEX, GENOME EDITING, DNA BINDING PROTEIN-DNA complex' _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN/DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 5 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER C 31 ? ASN C 45 ? SER C 31 ASN C 45 1 ? 15 HELX_P HELX_P2 AA2 THR C 49 ? GLY C 61 ? THR C 49 GLY C 61 1 ? 13 HELX_P HELX_P3 AA3 ASN C 63 ? ALA C 76 ? ASN C 63 ALA C 76 1 ? 14 HELX_P HELX_P4 AA4 SER C 96 ? ASN C 110 ? SER C 96 ASN C 110 1 ? 15 HELX_P HELX_P5 AA5 THR C 114 ? GLY C 126 ? THR C 114 GLY C 126 1 ? 13 HELX_P HELX_P6 AA6 ASN C 128 ? GLY C 147 ? ASN C 128 GLY C 147 1 ? 20 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DA 8 OP2 A ? ? 1_555 D NA . NA ? ? A DA 8 A NA 101 1_555 ? ? ? ? ? ? ? 2.775 ? ? metalc2 metalc ? ? A DA 8 OP2 B ? ? 1_555 D NA . NA ? ? A DA 8 A NA 101 1_555 ? ? ? ? ? ? ? 2.622 ? ? metalc3 metalc ? ? D NA . NA ? ? ? 1_555 E HOH . O ? ? A NA 101 A HOH 213 1_555 ? ? ? ? ? ? ? 2.872 ? ? hydrog1 hydrog ? ? A DT 1 N3 A ? ? 1_555 B DA 12 N1 A ? A DT 1 B DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DT 1 N3 B ? ? 1_555 B DA 12 N1 B ? A DT 1 B DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DT 1 O4 A ? ? 1_555 B DA 12 N6 A ? A DT 1 B DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 1 O4 B ? ? 1_555 B DA 12 N6 B ? A DT 1 B DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DA 2 N1 A ? ? 1_555 B DT 11 N3 A ? A DA 2 B DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DA 2 N1 B ? ? 1_555 B DT 11 N3 B ? A DA 2 B DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 2 N6 A ? ? 1_555 B DT 11 O4 A ? A DA 2 B DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DA 2 N6 B ? ? 1_555 B DT 11 O4 B ? A DA 2 B DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 3 N1 A ? ? 1_555 B DT 10 N3 A ? A DA 3 B DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 3 N1 B ? ? 1_555 B DT 10 N3 B ? A DA 3 B DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 3 N6 A ? ? 1_555 B DT 10 O4 A ? A DA 3 B DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 3 N6 B ? ? 1_555 B DT 10 O4 B ? A DA 3 B DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DT 4 N3 A ? ? 1_555 B DA 9 N1 A ? A DT 4 B DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DT 4 N3 B ? ? 1_555 B DA 9 N1 B ? A DT 4 B DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DT 4 O4 A ? ? 1_555 B DA 9 N6 A ? A DT 4 B DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DT 4 O4 B ? ? 1_555 B DA 9 N6 B ? A DT 4 B DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 5 N3 A ? ? 1_555 B DG 8 N1 A ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 5 N3 B ? ? 1_555 B DG 8 N1 B ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 5 N4 A ? ? 1_555 B DG 8 O6 A ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 5 N4 B ? ? 1_555 B DG 8 O6 B ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 5 O2 A ? ? 1_555 B DG 8 N2 A ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 5 O2 B ? ? 1_555 B DG 8 N2 B ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 6 N3 A ? ? 1_555 B DG 7 N1 A ? A DC 6 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 6 N3 B ? ? 1_555 B DG 7 N1 B ? A DC 6 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 6 N4 A ? ? 1_555 B DG 7 O6 A ? A DC 6 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 6 N4 B ? ? 1_555 B DG 7 O6 B ? A DC 6 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 6 O2 A ? ? 1_555 B DG 7 N2 A ? A DC 6 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 6 O2 B ? ? 1_555 B DG 7 N2 B ? A DC 6 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DT 7 N3 A ? ? 1_555 B DA 6 N1 A ? A DT 7 B DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DT 7 N3 B ? ? 1_555 B DA 6 N1 B ? A DT 7 B DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DT 7 O4 A ? ? 1_555 B DA 6 N6 A ? A DT 7 B DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DT 7 O4 B ? ? 1_555 B DA 6 N6 B ? A DT 7 B DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DA 8 N1 A ? ? 1_555 B DT 5 N3 A ? A DA 8 B DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DA 8 N1 B ? ? 1_555 B DT 5 N3 B ? A DA 8 B DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DA 8 N6 A ? ? 1_555 B DT 5 O4 A ? A DA 8 B DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DA 8 N6 B ? ? 1_555 B DT 5 O4 B ? A DA 8 B DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DA 9 N1 A ? ? 1_555 B DT 4 N3 A ? A DA 9 B DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A DA 9 N1 B ? ? 1_555 B DT 4 N3 B ? A DA 9 B DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A DA 9 N6 A ? ? 1_555 B DT 4 O4 A ? A DA 9 B DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A DA 9 N6 B ? ? 1_555 B DT 4 O4 B ? A DA 9 B DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A DT 10 N3 A ? ? 1_555 B DA 3 N1 A ? A DT 10 B DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A DT 10 N3 B ? ? 1_555 B DA 3 N1 B ? A DT 10 B DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A DT 10 O4 A ? ? 1_555 B DA 3 N6 A ? A DT 10 B DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A DT 10 O4 B ? ? 1_555 B DA 3 N6 B ? A DT 10 B DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A DC 11 N3 A ? ? 1_555 B DG 2 N1 A ? A DC 11 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A DC 11 N3 B ? ? 1_555 B DG 2 N1 B ? A DC 11 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A DC 11 N4 A ? ? 1_555 B DG 2 O6 A ? A DC 11 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A DC 11 N4 B ? ? 1_555 B DG 2 O6 B ? A DC 11 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A DC 11 O2 A ? ? 1_555 B DG 2 N2 A ? A DC 11 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A DC 11 O2 B ? ? 1_555 B DG 2 N2 B ? A DC 11 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A DC 12 N3 A ? ? 1_555 B DG 1 N1 A ? A DC 12 B DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A DC 12 N3 B ? ? 1_555 B DG 1 N1 B ? A DC 12 B DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A DC 12 N4 A ? ? 1_555 B DG 1 O6 A ? A DC 12 B DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A DC 12 N4 B ? ? 1_555 B DG 1 O6 B ? A DC 12 B DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A DC 12 O2 A ? ? 1_555 B DG 1 N2 A ? A DC 12 B DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A DC 12 O2 B ? ? 1_555 B DG 1 N2 B ? A DC 12 B DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id NA _struct_site.pdbx_auth_seq_id 101 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 4 _struct_site.details 'binding site for residue NA A 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 DA A 8 ? DA A 8 . ? 1_555 ? 2 AC1 4 HOH E . ? HOH A 213 . ? 1_555 ? 3 AC1 4 TRP C 135 ? TRP C 135 . ? 1_555 ? 4 AC1 4 ASN C 138 ? ASN C 138 . ? 1_555 ? # _atom_sites.entry_id 6M3D _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.025127 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.007418 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016277 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.026082 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 25.62398 1.50364 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 19.97189 1.75589 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? NA ? ? 9.38062 1.54875 3.38349 72.32734 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 15.80542 1.70748 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? P ? ? 9.51135 5.44231 1.42069 35.72801 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT DT A . n A 1 2 DA 2 2 2 DA DA A . n A 1 3 DA 3 3 3 DA DA A . n A 1 4 DT 4 4 4 DT DT A . n A 1 5 DC 5 5 5 DC DC A . n A 1 6 DC 6 6 6 DC DC A . n A 1 7 DT 7 7 7 DT DT A . n A 1 8 DA 8 8 8 DA DA A . n A 1 9 DA 9 9 9 DA DA A . n A 1 10 DT 10 10 10 DT DT A . n A 1 11 DC 11 11 11 DC DC A . n A 1 12 DC 12 12 12 DC DC A . n B 2 1 DG 1 1 1 DG DG B . n B 2 2 DG 2 2 2 DG DG B . n B 2 3 DA 3 3 3 DA DA B . n B 2 4 DT 4 4 4 DT DT B . n B 2 5 DT 5 5 5 DT DT B . n B 2 6 DA 6 6 6 DA DA B . n B 2 7 DG 7 7 7 DG DG B . n B 2 8 DG 8 8 8 DG DG B . n B 2 9 DA 9 9 9 DA DA B . n B 2 10 DT 10 10 10 DT DT B . n B 2 11 DT 11 11 11 DT DT B . n B 2 12 DA 12 12 12 DA DA B . n C 3 1 MET 1 1 ? ? ? C . n C 3 2 GLY 2 2 ? ? ? C . n C 3 3 SER 3 3 ? ? ? C . n C 3 4 SER 4 4 ? ? ? C . n C 3 5 HIS 5 5 ? ? ? C . n C 3 6 HIS 6 6 ? ? ? C . n C 3 7 HIS 7 7 ? ? ? C . n C 3 8 HIS 8 8 ? ? ? C . n C 3 9 HIS 9 9 ? ? ? C . n C 3 10 HIS 10 10 ? ? ? C . n C 3 11 ALA 11 11 ? ? ? C . n C 3 12 ILE 12 12 ? ? ? C . n C 3 13 GLU 13 13 ? ? ? C . n C 3 14 ASP 14 14 ? ? ? C . n C 3 15 LEU 15 15 ? ? ? C . n C 3 16 TYR 16 16 ? ? ? C . n C 3 17 PHE 17 17 ? ? ? C . n C 3 18 GLN 18 18 ? ? ? C . n C 3 19 SER 19 19 ? ? ? C . n C 3 20 PRO 20 20 ? ? ? C . n C 3 21 GLY 21 21 ? ? ? C . n C 3 22 ASP 22 22 ? ? ? C . n C 3 23 GLU 23 23 ? ? ? C . n C 3 24 LYS 24 24 ? ? ? C . n C 3 25 ARG 25 25 ? ? ? C . n C 3 26 PRO 26 26 ? ? ? C . n C 3 27 ARG 27 27 5 ARG ARG C . n C 3 28 THR 28 28 6 THR THR C . n C 3 29 ALA 29 29 7 ALA ALA C . n C 3 30 PHE 30 30 8 PHE PHE C . n C 3 31 SER 31 31 9 SER SER C . n C 3 32 SER 32 32 10 SER SER C . n C 3 33 GLU 33 33 11 GLU GLU C . n C 3 34 GLN 34 34 12 GLN GLN C . n C 3 35 LEU 35 35 13 LEU LEU C . n C 3 36 ALA 36 36 14 ALA ALA C . n C 3 37 ARG 37 37 15 ARG ARG C . n C 3 38 LEU 38 38 16 LEU LEU C . n C 3 39 LYS 39 39 17 LYS LYS C . n C 3 40 ARG 40 40 18 ARG ARG C . n C 3 41 GLU 41 41 19 GLU GLU C . n C 3 42 PHE 42 42 20 PHE PHE C . n C 3 43 ASN 43 43 21 ASN ASN C . n C 3 44 GLU 44 44 22 GLU GLU C . n C 3 45 ASN 45 45 23 ASN ASN C . n C 3 46 ARG 46 46 24 ARG ARG C . n C 3 47 TYR 47 47 25 TYR TYR C . n C 3 48 LEU 48 48 26 LEU LEU C . n C 3 49 THR 49 49 27 THR THR C . n C 3 50 GLU 50 50 28 GLU GLU C . n C 3 51 ARG 51 51 29 ARG ARG C . n C 3 52 ARG 52 52 30 ARG ARG C . n C 3 53 ARG 53 53 31 ARG ARG C . n C 3 54 GLN 54 54 32 GLN GLN C . n C 3 55 GLN 55 55 33 GLN GLN C . n C 3 56 LEU 56 56 34 LEU LEU C . n C 3 57 SER 57 57 35 SER SER C . n C 3 58 SER 58 58 36 SER SER C . n C 3 59 GLU 59 59 37 GLU GLU C . n C 3 60 LEU 60 60 38 LEU LEU C . n C 3 61 GLY 61 61 39 GLY GLY C . n C 3 62 LEU 62 62 40 LEU LEU C . n C 3 63 ASN 63 63 41 ASN ASN C . n C 3 64 GLU 64 64 42 GLU GLU C . n C 3 65 ALA 65 65 43 ALA ALA C . n C 3 66 GLN 66 66 44 GLN GLN C . n C 3 67 ILE 67 67 45 ILE ILE C . n C 3 68 LYS 68 68 46 LYS LYS C . n C 3 69 ILE 69 69 47 ILE ILE C . n C 3 70 TRP 70 70 48 TRP TRP C . n C 3 71 PHE 71 71 49 PHE PHE C . n C 3 72 LYS 72 72 50 LYS LYS C . n C 3 73 ASN 73 73 51 ASN ASN C . n C 3 74 LYS 74 74 52 LYS LYS C . n C 3 75 ALA 75 75 53 ALA ALA C . n C 3 76 ALA 76 76 54 ALA ALA C . n C 3 77 LYS 77 77 ? ? ? C . n C 3 78 ILE 78 78 ? ? ? C . n C 3 79 LYS 79 79 ? ? ? C . n C 3 80 LYS 80 80 ? ? ? C . n C 3 81 SER 81 81 ? ? ? C . n C 3 82 GLY 82 82 ? ? ? C . n C 3 83 GLY 83 83 ? ? ? C . n C 3 84 GLY 84 84 ? ? ? C . n C 3 85 GLY 85 85 ? ? ? C . n C 3 86 GLY 86 86 ? ? ? C . n C 3 87 ASP 87 87 ? ? ? C . n C 3 88 GLU 88 88 ? ? ? C . n C 3 89 LYS 89 89 ? ? ? C . n C 3 90 ARG 90 90 3 ARG ARG C . n C 3 91 PRO 91 91 4 PRO PRO C . n C 3 92 ARG 92 92 5 ARG ARG C . n C 3 93 THR 93 93 6 THR THR C . n C 3 94 ALA 94 94 7 ALA ALA C . n C 3 95 PHE 95 95 8 PHE PHE C . n C 3 96 SER 96 96 9 SER SER C . n C 3 97 SER 97 97 10 SER SER C . n C 3 98 GLU 98 98 11 GLU GLU C . n C 3 99 GLN 99 99 12 GLN GLN C . n C 3 100 LEU 100 100 13 LEU LEU C . n C 3 101 ALA 101 101 14 ALA ALA C . n C 3 102 ARG 102 102 15 ARG ARG C . n C 3 103 LEU 103 103 16 LEU LEU C . n C 3 104 LYS 104 104 17 LYS LYS C . n C 3 105 ARG 105 105 18 ARG ARG C . n C 3 106 GLU 106 106 19 GLU GLU C . n C 3 107 PHE 107 107 20 PHE PHE C . n C 3 108 ASN 108 108 21 ASN ASN C . n C 3 109 GLU 109 109 22 GLU GLU C . n C 3 110 ASN 110 110 23 ASN ASN C . n C 3 111 ARG 111 111 24 ARG ARG C . n C 3 112 TYR 112 112 25 TYR TYR C . n C 3 113 LEU 113 113 26 LEU LEU C . n C 3 114 THR 114 114 27 THR THR C . n C 3 115 GLU 115 115 28 GLU GLU C . n C 3 116 ARG 116 116 29 ARG ARG C . n C 3 117 ARG 117 117 30 ARG ARG C . n C 3 118 ARG 118 118 31 ARG ARG C . n C 3 119 GLN 119 119 32 GLN GLN C . n C 3 120 GLN 120 120 33 GLN GLN C . n C 3 121 LEU 121 121 34 LEU LEU C . n C 3 122 SER 122 122 35 SER SER C . n C 3 123 SER 123 123 36 SER SER C . n C 3 124 GLU 124 124 37 GLU GLU C . n C 3 125 LEU 125 125 38 LEU LEU C . n C 3 126 GLY 126 126 39 GLY GLY C . n C 3 127 LEU 127 127 40 LEU LEU C . n C 3 128 ASN 128 128 41 ASN ASN C . n C 3 129 GLU 129 129 42 GLU GLU C . n C 3 130 ALA 130 130 43 ALA ALA C . n C 3 131 GLN 131 131 44 GLN GLN C . n C 3 132 ILE 132 132 45 ILE ILE C . n C 3 133 LYS 133 133 46 LYS LYS C . n C 3 134 ILE 134 134 47 ILE ILE C . n C 3 135 TRP 135 135 48 TRP TRP C . n C 3 136 PHE 136 136 49 PHE PHE C . n C 3 137 LYS 137 137 50 LYS LYS C . n C 3 138 ASN 138 138 51 ASN ASN C . n C 3 139 LYS 139 139 52 LYS LYS C . n C 3 140 ALA 140 140 53 ALA ALA C . n C 3 141 ALA 141 141 54 ALA ALA C . n C 3 142 LYS 142 142 55 LYS LYS C . n C 3 143 ILE 143 143 56 ILE ILE C . n C 3 144 LYS 144 144 57 LYS LYS C . n C 3 145 LYS 145 145 58 LYS LYS C . n C 3 146 SER 146 146 59 SER SER C . n C 3 147 GLY 147 147 60 GLY GLY C . n C 3 148 THR 148 148 ? ? ? C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NA 1 101 1 NA NA A . E 5 HOH 1 201 96 HOH HOH A . E 5 HOH 2 202 198 HOH HOH A . E 5 HOH 3 203 129 HOH HOH A . E 5 HOH 4 204 119 HOH HOH A . E 5 HOH 5 205 14 HOH HOH A . E 5 HOH 6 206 29 HOH HOH A . E 5 HOH 7 207 74 HOH HOH A . E 5 HOH 8 208 52 HOH HOH A . E 5 HOH 9 209 121 HOH HOH A . E 5 HOH 10 210 91 HOH HOH A . E 5 HOH 11 211 64 HOH HOH A . E 5 HOH 12 212 70 HOH HOH A . E 5 HOH 13 213 2 HOH HOH A . E 5 HOH 14 214 13 HOH HOH A . E 5 HOH 15 215 135 HOH HOH A . E 5 HOH 16 216 19 HOH HOH A . E 5 HOH 17 217 94 HOH HOH A . E 5 HOH 18 218 126 HOH HOH A . E 5 HOH 19 219 79 HOH HOH A . E 5 HOH 20 220 120 HOH HOH A . E 5 HOH 21 221 97 HOH HOH A . E 5 HOH 22 222 6 HOH HOH A . E 5 HOH 23 223 1 HOH HOH A . E 5 HOH 24 224 5 HOH HOH A . E 5 HOH 25 225 44 HOH HOH A . E 5 HOH 26 226 26 HOH HOH A . E 5 HOH 27 227 188 HOH HOH A . E 5 HOH 28 228 40 HOH HOH A . E 5 HOH 29 229 47 HOH HOH A . E 5 HOH 30 230 178 HOH HOH A . E 5 HOH 31 231 185 HOH HOH A . E 5 HOH 32 232 102 HOH HOH A . E 5 HOH 33 233 181 HOH HOH A . E 5 HOH 34 234 84 HOH HOH A . E 5 HOH 35 235 197 HOH HOH A . E 5 HOH 36 236 194 HOH HOH A . E 5 HOH 37 237 204 HOH HOH A . E 5 HOH 38 238 143 HOH HOH A . E 5 HOH 39 239 95 HOH HOH A . E 5 HOH 40 240 114 HOH HOH A . E 5 HOH 41 241 82 HOH HOH A . E 5 HOH 42 242 184 HOH HOH A . F 5 HOH 1 101 205 HOH HOH B . F 5 HOH 2 102 180 HOH HOH B . F 5 HOH 3 103 132 HOH HOH B . F 5 HOH 4 104 76 HOH HOH B . F 5 HOH 5 105 45 HOH HOH B . F 5 HOH 6 106 55 HOH HOH B . F 5 HOH 7 107 147 HOH HOH B . F 5 HOH 8 108 104 HOH HOH B . F 5 HOH 9 109 177 HOH HOH B . F 5 HOH 10 110 62 HOH HOH B . F 5 HOH 11 111 193 HOH HOH B . F 5 HOH 12 112 35 HOH HOH B . F 5 HOH 13 113 103 HOH HOH B . F 5 HOH 14 114 90 HOH HOH B . F 5 HOH 15 115 142 HOH HOH B . F 5 HOH 16 116 60 HOH HOH B . F 5 HOH 17 117 15 HOH HOH B . F 5 HOH 18 118 12 HOH HOH B . F 5 HOH 19 119 156 HOH HOH B . F 5 HOH 20 120 24 HOH HOH B . F 5 HOH 21 121 173 HOH HOH B . F 5 HOH 22 122 160 HOH HOH B . F 5 HOH 23 123 139 HOH HOH B . F 5 HOH 24 124 136 HOH HOH B . F 5 HOH 25 125 10 HOH HOH B . F 5 HOH 26 126 144 HOH HOH B . F 5 HOH 27 127 165 HOH HOH B . F 5 HOH 28 128 16 HOH HOH B . F 5 HOH 29 129 3 HOH HOH B . F 5 HOH 30 130 78 HOH HOH B . F 5 HOH 31 131 179 HOH HOH B . F 5 HOH 32 132 7 HOH HOH B . F 5 HOH 33 133 22 HOH HOH B . F 5 HOH 34 134 100 HOH HOH B . F 5 HOH 35 135 159 HOH HOH B . F 5 HOH 36 136 80 HOH HOH B . F 5 HOH 37 137 153 HOH HOH B . F 5 HOH 38 138 93 HOH HOH B . F 5 HOH 39 139 195 HOH HOH B . F 5 HOH 40 140 134 HOH HOH B . F 5 HOH 41 141 58 HOH HOH B . F 5 HOH 42 142 176 HOH HOH B . F 5 HOH 43 143 37 HOH HOH B . F 5 HOH 44 144 122 HOH HOH B . F 5 HOH 45 145 61 HOH HOH B . F 5 HOH 46 146 69 HOH HOH B . F 5 HOH 47 147 63 HOH HOH B . F 5 HOH 48 148 200 HOH HOH B . F 5 HOH 49 149 113 HOH HOH B . F 5 HOH 50 150 67 HOH HOH B . F 5 HOH 51 151 167 HOH HOH B . F 5 HOH 52 152 98 HOH HOH B . F 5 HOH 53 153 11 HOH HOH B . F 5 HOH 54 154 53 HOH HOH B . G 5 HOH 1 301 39 HOH HOH C . G 5 HOH 2 302 21 HOH HOH C . G 5 HOH 3 303 83 HOH HOH C . G 5 HOH 4 304 191 HOH HOH C . G 5 HOH 5 305 42 HOH HOH C . G 5 HOH 6 306 20 HOH HOH C . G 5 HOH 7 307 145 HOH HOH C . G 5 HOH 8 308 157 HOH HOH C . G 5 HOH 9 309 150 HOH HOH C . G 5 HOH 10 310 36 HOH HOH C . G 5 HOH 11 311 163 HOH HOH C . G 5 HOH 12 312 48 HOH HOH C . G 5 HOH 13 313 192 HOH HOH C . G 5 HOH 14 314 108 HOH HOH C . G 5 HOH 15 315 133 HOH HOH C . G 5 HOH 16 316 9 HOH HOH C . G 5 HOH 17 317 187 HOH HOH C . G 5 HOH 18 318 130 HOH HOH C . G 5 HOH 19 319 162 HOH HOH C . G 5 HOH 20 320 112 HOH HOH C . G 5 HOH 21 321 28 HOH HOH C . G 5 HOH 22 322 68 HOH HOH C . G 5 HOH 23 323 118 HOH HOH C . G 5 HOH 24 324 124 HOH HOH C . G 5 HOH 25 325 128 HOH HOH C . G 5 HOH 26 326 17 HOH HOH C . G 5 HOH 27 327 127 HOH HOH C . G 5 HOH 28 328 56 HOH HOH C . G 5 HOH 29 329 38 HOH HOH C . G 5 HOH 30 330 8 HOH HOH C . G 5 HOH 31 331 4 HOH HOH C . G 5 HOH 32 332 155 HOH HOH C . G 5 HOH 33 333 85 HOH HOH C . G 5 HOH 34 334 49 HOH HOH C . G 5 HOH 35 335 172 HOH HOH C . G 5 HOH 36 336 154 HOH HOH C . G 5 HOH 37 337 31 HOH HOH C . G 5 HOH 38 338 123 HOH HOH C . G 5 HOH 39 339 138 HOH HOH C . G 5 HOH 40 340 43 HOH HOH C . G 5 HOH 41 341 71 HOH HOH C . G 5 HOH 42 342 65 HOH HOH C . G 5 HOH 43 343 152 HOH HOH C . G 5 HOH 44 344 202 HOH HOH C . G 5 HOH 45 345 101 HOH HOH C . G 5 HOH 46 346 125 HOH HOH C . G 5 HOH 47 347 50 HOH HOH C . G 5 HOH 48 348 149 HOH HOH C . G 5 HOH 49 349 105 HOH HOH C . G 5 HOH 50 350 23 HOH HOH C . G 5 HOH 51 351 18 HOH HOH C . G 5 HOH 52 352 183 HOH HOH C . G 5 HOH 53 353 66 HOH HOH C . G 5 HOH 54 354 27 HOH HOH C . G 5 HOH 55 355 158 HOH HOH C . G 5 HOH 56 356 175 HOH HOH C . G 5 HOH 57 357 51 HOH HOH C . G 5 HOH 58 358 203 HOH HOH C . G 5 HOH 59 359 110 HOH HOH C . G 5 HOH 60 360 99 HOH HOH C . G 5 HOH 61 361 182 HOH HOH C . G 5 HOH 62 362 30 HOH HOH C . G 5 HOH 63 363 81 HOH HOH C . G 5 HOH 64 364 59 HOH HOH C . G 5 HOH 65 365 148 HOH HOH C . G 5 HOH 66 366 41 HOH HOH C . G 5 HOH 67 367 73 HOH HOH C . G 5 HOH 68 368 33 HOH HOH C . G 5 HOH 69 369 54 HOH HOH C . G 5 HOH 70 370 189 HOH HOH C . G 5 HOH 71 371 34 HOH HOH C . G 5 HOH 72 372 109 HOH HOH C . G 5 HOH 73 373 174 HOH HOH C . G 5 HOH 74 374 206 HOH HOH C . G 5 HOH 75 375 117 HOH HOH C . G 5 HOH 76 376 201 HOH HOH C . G 5 HOH 77 377 77 HOH HOH C . G 5 HOH 78 378 106 HOH HOH C . G 5 HOH 79 379 169 HOH HOH C . G 5 HOH 80 380 89 HOH HOH C . G 5 HOH 81 381 111 HOH HOH C . G 5 HOH 82 382 116 HOH HOH C . G 5 HOH 83 383 166 HOH HOH C . G 5 HOH 84 384 168 HOH HOH C . G 5 HOH 85 385 146 HOH HOH C . G 5 HOH 86 386 46 HOH HOH C . G 5 HOH 87 387 75 HOH HOH C . G 5 HOH 88 388 207 HOH HOH C . G 5 HOH 89 389 57 HOH HOH C . G 5 HOH 90 390 88 HOH HOH C . G 5 HOH 91 391 141 HOH HOH C . G 5 HOH 92 392 161 HOH HOH C . G 5 HOH 93 393 32 HOH HOH C . G 5 HOH 94 394 115 HOH HOH C . G 5 HOH 95 395 170 HOH HOH C . G 5 HOH 96 396 107 HOH HOH C . G 5 HOH 97 397 25 HOH HOH C . G 5 HOH 98 398 196 HOH HOH C . G 5 HOH 99 399 131 HOH HOH C . G 5 HOH 100 400 140 HOH HOH C . G 5 HOH 101 401 186 HOH HOH C . G 5 HOH 102 402 151 HOH HOH C . G 5 HOH 103 403 86 HOH HOH C . G 5 HOH 104 404 92 HOH HOH C . G 5 HOH 105 405 190 HOH HOH C . G 5 HOH 106 406 171 HOH HOH C . G 5 HOH 107 407 72 HOH HOH C . G 5 HOH 108 408 164 HOH HOH C . G 5 HOH 109 409 137 HOH HOH C . G 5 HOH 110 410 199 HOH HOH C . G 5 HOH 111 411 87 HOH HOH C . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3150 ? 1 MORE -29 ? 1 'SSA (A^2)' 10900 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP2 A A DA 8 ? A DA 8 ? 1_555 NA ? D NA . ? A NA 101 ? 1_555 OP2 B A DA 8 ? A DA 8 ? 1_555 1.5 ? 2 OP2 A A DA 8 ? A DA 8 ? 1_555 NA ? D NA . ? A NA 101 ? 1_555 O ? E HOH . ? A HOH 213 ? 1_555 128.2 ? 3 OP2 B A DA 8 ? A DA 8 ? 1_555 NA ? D NA . ? A NA 101 ? 1_555 O ? E HOH . ? A HOH 213 ? 1_555 127.0 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-09-16 2 'Structure model' 1 1 2023-11-29 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -x,y+1/2,-z # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.10.1_2155 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _pdbx_entry_details.entry_id 6M3D _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 12 ? A "C1'" A DC 12 ? A N1 A DC 12 ? A 110.14 108.30 1.84 0.30 N 2 1 "C3'" B DG 7 ? B "C2'" B DG 7 ? B "C1'" B DG 7 ? B 96.76 102.40 -5.64 0.80 N 3 1 "O4'" B DG 7 ? B "C1'" B DG 7 ? B N9 B DG 7 ? B 111.93 108.30 3.63 0.30 N 4 1 "O4'" B DG 8 ? A "C1'" B DG 8 ? A N9 B DG 8 ? A 112.63 108.30 4.33 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN C 45 ? ? -163.58 114.82 2 1 ASN C 110 ? ? -166.30 116.48 3 1 SER C 146 ? ? -79.67 -82.39 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 C MET 1 ? C MET 1 2 1 Y 1 C GLY 2 ? C GLY 2 3 1 Y 1 C SER 3 ? C SER 3 4 1 Y 1 C SER 4 ? C SER 4 5 1 Y 1 C HIS 5 ? C HIS 5 6 1 Y 1 C HIS 6 ? C HIS 6 7 1 Y 1 C HIS 7 ? C HIS 7 8 1 Y 1 C HIS 8 ? C HIS 8 9 1 Y 1 C HIS 9 ? C HIS 9 10 1 Y 1 C HIS 10 ? C HIS 10 11 1 Y 1 C ALA 11 ? C ALA 11 12 1 Y 1 C ILE 12 ? C ILE 12 13 1 Y 1 C GLU 13 ? C GLU 13 14 1 Y 1 C ASP 14 ? C ASP 14 15 1 Y 1 C LEU 15 ? C LEU 15 16 1 Y 1 C TYR 16 ? C TYR 16 17 1 Y 1 C PHE 17 ? C PHE 17 18 1 Y 1 C GLN 18 ? C GLN 18 19 1 Y 1 C SER 19 ? C SER 19 20 1 Y 1 C PRO 20 ? C PRO 20 21 1 Y 1 C GLY 21 ? C GLY 21 22 1 Y 1 C ASP 22 ? C ASP 22 23 1 Y 1 C GLU 23 ? C GLU 23 24 1 Y 1 C LYS 24 ? C LYS 24 25 1 Y 1 C ARG 25 ? C ARG 25 26 1 Y 1 C PRO 26 ? C PRO 26 27 1 Y 1 C LYS 77 ? C LYS 77 28 1 Y 1 C ILE 78 ? C ILE 78 29 1 Y 1 C LYS 79 ? C LYS 79 30 1 Y 1 C LYS 80 ? C LYS 80 31 1 Y 1 C SER 81 ? C SER 81 32 1 Y 1 C GLY 82 ? C GLY 82 33 1 Y 1 C GLY 83 ? C GLY 83 34 1 Y 1 C GLY 84 ? C GLY 84 35 1 Y 1 C GLY 85 ? C GLY 85 36 1 Y 1 C GLY 86 ? C GLY 86 37 1 Y 1 C ASP 87 ? C ASP 87 38 1 Y 1 C GLU 88 ? C GLU 88 39 1 Y 1 C LYS 89 ? C LYS 89 40 1 Y 1 C THR 148 ? C THR 148 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 DA OP3 O N N 74 DA P P N N 75 DA OP1 O N N 76 DA OP2 O N N 77 DA "O5'" O N N 78 DA "C5'" C N N 79 DA "C4'" C N R 80 DA "O4'" O N N 81 DA "C3'" C N S 82 DA "O3'" O N N 83 DA "C2'" C N N 84 DA "C1'" C N R 85 DA N9 N Y N 86 DA C8 C Y N 87 DA N7 N Y N 88 DA C5 C Y N 89 DA C6 C Y N 90 DA N6 N N N 91 DA N1 N Y N 92 DA C2 C Y N 93 DA N3 N Y N 94 DA C4 C Y N 95 DA HOP3 H N N 96 DA HOP2 H N N 97 DA "H5'" H N N 98 DA "H5''" H N N 99 DA "H4'" H N N 100 DA "H3'" H N N 101 DA "HO3'" H N N 102 DA "H2'" H N N 103 DA "H2''" H N N 104 DA "H1'" H N N 105 DA H8 H N N 106 DA H61 H N N 107 DA H62 H N N 108 DA H2 H N N 109 DC OP3 O N N 110 DC P P N N 111 DC OP1 O N N 112 DC OP2 O N N 113 DC "O5'" O N N 114 DC "C5'" C N N 115 DC "C4'" C N R 116 DC "O4'" O N N 117 DC "C3'" C N S 118 DC "O3'" O N N 119 DC "C2'" C N N 120 DC "C1'" C N R 121 DC N1 N N N 122 DC C2 C N N 123 DC O2 O N N 124 DC N3 N N N 125 DC C4 C N N 126 DC N4 N N N 127 DC C5 C N N 128 DC C6 C N N 129 DC HOP3 H N N 130 DC HOP2 H N N 131 DC "H5'" H N N 132 DC "H5''" H N N 133 DC "H4'" H N N 134 DC "H3'" H N N 135 DC "HO3'" H N N 136 DC "H2'" H N N 137 DC "H2''" H N N 138 DC "H1'" H N N 139 DC H41 H N N 140 DC H42 H N N 141 DC H5 H N N 142 DC H6 H N N 143 DG OP3 O N N 144 DG P P N N 145 DG OP1 O N N 146 DG OP2 O N N 147 DG "O5'" O N N 148 DG "C5'" C N N 149 DG "C4'" C N R 150 DG "O4'" O N N 151 DG "C3'" C N S 152 DG "O3'" O N N 153 DG "C2'" C N N 154 DG "C1'" C N R 155 DG N9 N Y N 156 DG C8 C Y N 157 DG N7 N Y N 158 DG C5 C Y N 159 DG C6 C N N 160 DG O6 O N N 161 DG N1 N N N 162 DG C2 C N N 163 DG N2 N N N 164 DG N3 N N N 165 DG C4 C Y N 166 DG HOP3 H N N 167 DG HOP2 H N N 168 DG "H5'" H N N 169 DG "H5''" H N N 170 DG "H4'" H N N 171 DG "H3'" H N N 172 DG "HO3'" H N N 173 DG "H2'" H N N 174 DG "H2''" H N N 175 DG "H1'" H N N 176 DG H8 H N N 177 DG H1 H N N 178 DG H21 H N N 179 DG H22 H N N 180 DT OP3 O N N 181 DT P P N N 182 DT OP1 O N N 183 DT OP2 O N N 184 DT "O5'" O N N 185 DT "C5'" C N N 186 DT "C4'" C N R 187 DT "O4'" O N N 188 DT "C3'" C N S 189 DT "O3'" O N N 190 DT "C2'" C N N 191 DT "C1'" C N R 192 DT N1 N N N 193 DT C2 C N N 194 DT O2 O N N 195 DT N3 N N N 196 DT C4 C N N 197 DT O4 O N N 198 DT C5 C N N 199 DT C7 C N N 200 DT C6 C N N 201 DT HOP3 H N N 202 DT HOP2 H N N 203 DT "H5'" H N N 204 DT "H5''" H N N 205 DT "H4'" H N N 206 DT "H3'" H N N 207 DT "HO3'" H N N 208 DT "H2'" H N N 209 DT "H2''" H N N 210 DT "H1'" H N N 211 DT H3 H N N 212 DT H71 H N N 213 DT H72 H N N 214 DT H73 H N N 215 DT H6 H N N 216 GLN N N N N 217 GLN CA C N S 218 GLN C C N N 219 GLN O O N N 220 GLN CB C N N 221 GLN CG C N N 222 GLN CD C N N 223 GLN OE1 O N N 224 GLN NE2 N N N 225 GLN OXT O N N 226 GLN H H N N 227 GLN H2 H N N 228 GLN HA H N N 229 GLN HB2 H N N 230 GLN HB3 H N N 231 GLN HG2 H N N 232 GLN HG3 H N N 233 GLN HE21 H N N 234 GLN HE22 H N N 235 GLN HXT H N N 236 GLU N N N N 237 GLU CA C N S 238 GLU C C N N 239 GLU O O N N 240 GLU CB C N N 241 GLU CG C N N 242 GLU CD C N N 243 GLU OE1 O N N 244 GLU OE2 O N N 245 GLU OXT O N N 246 GLU H H N N 247 GLU H2 H N N 248 GLU HA H N N 249 GLU HB2 H N N 250 GLU HB3 H N N 251 GLU HG2 H N N 252 GLU HG3 H N N 253 GLU HE2 H N N 254 GLU HXT H N N 255 GLY N N N N 256 GLY CA C N N 257 GLY C C N N 258 GLY O O N N 259 GLY OXT O N N 260 GLY H H N N 261 GLY H2 H N N 262 GLY HA2 H N N 263 GLY HA3 H N N 264 GLY HXT H N N 265 HIS N N N N 266 HIS CA C N S 267 HIS C C N N 268 HIS O O N N 269 HIS CB C N N 270 HIS CG C Y N 271 HIS ND1 N Y N 272 HIS CD2 C Y N 273 HIS CE1 C Y N 274 HIS NE2 N Y N 275 HIS OXT O N N 276 HIS H H N N 277 HIS H2 H N N 278 HIS HA H N N 279 HIS HB2 H N N 280 HIS HB3 H N N 281 HIS HD1 H N N 282 HIS HD2 H N N 283 HIS HE1 H N N 284 HIS HE2 H N N 285 HIS HXT H N N 286 HOH O O N N 287 HOH H1 H N N 288 HOH H2 H N N 289 ILE N N N N 290 ILE CA C N S 291 ILE C C N N 292 ILE O O N N 293 ILE CB C N S 294 ILE CG1 C N N 295 ILE CG2 C N N 296 ILE CD1 C N N 297 ILE OXT O N N 298 ILE H H N N 299 ILE H2 H N N 300 ILE HA H N N 301 ILE HB H N N 302 ILE HG12 H N N 303 ILE HG13 H N N 304 ILE HG21 H N N 305 ILE HG22 H N N 306 ILE HG23 H N N 307 ILE HD11 H N N 308 ILE HD12 H N N 309 ILE HD13 H N N 310 ILE HXT H N N 311 LEU N N N N 312 LEU CA C N S 313 LEU C C N N 314 LEU O O N N 315 LEU CB C N N 316 LEU CG C N N 317 LEU CD1 C N N 318 LEU CD2 C N N 319 LEU OXT O N N 320 LEU H H N N 321 LEU H2 H N N 322 LEU HA H N N 323 LEU HB2 H N N 324 LEU HB3 H N N 325 LEU HG H N N 326 LEU HD11 H N N 327 LEU HD12 H N N 328 LEU HD13 H N N 329 LEU HD21 H N N 330 LEU HD22 H N N 331 LEU HD23 H N N 332 LEU HXT H N N 333 LYS N N N N 334 LYS CA C N S 335 LYS C C N N 336 LYS O O N N 337 LYS CB C N N 338 LYS CG C N N 339 LYS CD C N N 340 LYS CE C N N 341 LYS NZ N N N 342 LYS OXT O N N 343 LYS H H N N 344 LYS H2 H N N 345 LYS HA H N N 346 LYS HB2 H N N 347 LYS HB3 H N N 348 LYS HG2 H N N 349 LYS HG3 H N N 350 LYS HD2 H N N 351 LYS HD3 H N N 352 LYS HE2 H N N 353 LYS HE3 H N N 354 LYS HZ1 H N N 355 LYS HZ2 H N N 356 LYS HZ3 H N N 357 LYS HXT H N N 358 MET N N N N 359 MET CA C N S 360 MET C C N N 361 MET O O N N 362 MET CB C N N 363 MET CG C N N 364 MET SD S N N 365 MET CE C N N 366 MET OXT O N N 367 MET H H N N 368 MET H2 H N N 369 MET HA H N N 370 MET HB2 H N N 371 MET HB3 H N N 372 MET HG2 H N N 373 MET HG3 H N N 374 MET HE1 H N N 375 MET HE2 H N N 376 MET HE3 H N N 377 MET HXT H N N 378 NA NA NA N N 379 PHE N N N N 380 PHE CA C N S 381 PHE C C N N 382 PHE O O N N 383 PHE CB C N N 384 PHE CG C Y N 385 PHE CD1 C Y N 386 PHE CD2 C Y N 387 PHE CE1 C Y N 388 PHE CE2 C Y N 389 PHE CZ C Y N 390 PHE OXT O N N 391 PHE H H N N 392 PHE H2 H N N 393 PHE HA H N N 394 PHE HB2 H N N 395 PHE HB3 H N N 396 PHE HD1 H N N 397 PHE HD2 H N N 398 PHE HE1 H N N 399 PHE HE2 H N N 400 PHE HZ H N N 401 PHE HXT H N N 402 PRO N N N N 403 PRO CA C N S 404 PRO C C N N 405 PRO O O N N 406 PRO CB C N N 407 PRO CG C N N 408 PRO CD C N N 409 PRO OXT O N N 410 PRO H H N N 411 PRO HA H N N 412 PRO HB2 H N N 413 PRO HB3 H N N 414 PRO HG2 H N N 415 PRO HG3 H N N 416 PRO HD2 H N N 417 PRO HD3 H N N 418 PRO HXT H N N 419 SER N N N N 420 SER CA C N S 421 SER C C N N 422 SER O O N N 423 SER CB C N N 424 SER OG O N N 425 SER OXT O N N 426 SER H H N N 427 SER H2 H N N 428 SER HA H N N 429 SER HB2 H N N 430 SER HB3 H N N 431 SER HG H N N 432 SER HXT H N N 433 THR N N N N 434 THR CA C N S 435 THR C C N N 436 THR O O N N 437 THR CB C N R 438 THR OG1 O N N 439 THR CG2 C N N 440 THR OXT O N N 441 THR H H N N 442 THR H2 H N N 443 THR HA H N N 444 THR HB H N N 445 THR HG1 H N N 446 THR HG21 H N N 447 THR HG22 H N N 448 THR HG23 H N N 449 THR HXT H N N 450 TRP N N N N 451 TRP CA C N S 452 TRP C C N N 453 TRP O O N N 454 TRP CB C N N 455 TRP CG C Y N 456 TRP CD1 C Y N 457 TRP CD2 C Y N 458 TRP NE1 N Y N 459 TRP CE2 C Y N 460 TRP CE3 C Y N 461 TRP CZ2 C Y N 462 TRP CZ3 C Y N 463 TRP CH2 C Y N 464 TRP OXT O N N 465 TRP H H N N 466 TRP H2 H N N 467 TRP HA H N N 468 TRP HB2 H N N 469 TRP HB3 H N N 470 TRP HD1 H N N 471 TRP HE1 H N N 472 TRP HE3 H N N 473 TRP HZ2 H N N 474 TRP HZ3 H N N 475 TRP HH2 H N N 476 TRP HXT H N N 477 TYR N N N N 478 TYR CA C N S 479 TYR C C N N 480 TYR O O N N 481 TYR CB C N N 482 TYR CG C Y N 483 TYR CD1 C Y N 484 TYR CD2 C Y N 485 TYR CE1 C Y N 486 TYR CE2 C Y N 487 TYR CZ C Y N 488 TYR OH O N N 489 TYR OXT O N N 490 TYR H H N N 491 TYR H2 H N N 492 TYR HA H N N 493 TYR HB2 H N N 494 TYR HB3 H N N 495 TYR HD1 H N N 496 TYR HD2 H N N 497 TYR HE1 H N N 498 TYR HE2 H N N 499 TYR HH H N N 500 TYR HXT H N N 501 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 DA OP3 P sing N N 70 DA OP3 HOP3 sing N N 71 DA P OP1 doub N N 72 DA P OP2 sing N N 73 DA P "O5'" sing N N 74 DA OP2 HOP2 sing N N 75 DA "O5'" "C5'" sing N N 76 DA "C5'" "C4'" sing N N 77 DA "C5'" "H5'" sing N N 78 DA "C5'" "H5''" sing N N 79 DA "C4'" "O4'" sing N N 80 DA "C4'" "C3'" sing N N 81 DA "C4'" "H4'" sing N N 82 DA "O4'" "C1'" sing N N 83 DA "C3'" "O3'" sing N N 84 DA "C3'" "C2'" sing N N 85 DA "C3'" "H3'" sing N N 86 DA "O3'" "HO3'" sing N N 87 DA "C2'" "C1'" sing N N 88 DA "C2'" "H2'" sing N N 89 DA "C2'" "H2''" sing N N 90 DA "C1'" N9 sing N N 91 DA "C1'" "H1'" sing N N 92 DA N9 C8 sing Y N 93 DA N9 C4 sing Y N 94 DA C8 N7 doub Y N 95 DA C8 H8 sing N N 96 DA N7 C5 sing Y N 97 DA C5 C6 sing Y N 98 DA C5 C4 doub Y N 99 DA C6 N6 sing N N 100 DA C6 N1 doub Y N 101 DA N6 H61 sing N N 102 DA N6 H62 sing N N 103 DA N1 C2 sing Y N 104 DA C2 N3 doub Y N 105 DA C2 H2 sing N N 106 DA N3 C4 sing Y N 107 DC OP3 P sing N N 108 DC OP3 HOP3 sing N N 109 DC P OP1 doub N N 110 DC P OP2 sing N N 111 DC P "O5'" sing N N 112 DC OP2 HOP2 sing N N 113 DC "O5'" "C5'" sing N N 114 DC "C5'" "C4'" sing N N 115 DC "C5'" "H5'" sing N N 116 DC "C5'" "H5''" sing N N 117 DC "C4'" "O4'" sing N N 118 DC "C4'" "C3'" sing N N 119 DC "C4'" "H4'" sing N N 120 DC "O4'" "C1'" sing N N 121 DC "C3'" "O3'" sing N N 122 DC "C3'" "C2'" sing N N 123 DC "C3'" "H3'" sing N N 124 DC "O3'" "HO3'" sing N N 125 DC "C2'" "C1'" sing N N 126 DC "C2'" "H2'" sing N N 127 DC "C2'" "H2''" sing N N 128 DC "C1'" N1 sing N N 129 DC "C1'" "H1'" sing N N 130 DC N1 C2 sing N N 131 DC N1 C6 sing N N 132 DC C2 O2 doub N N 133 DC C2 N3 sing N N 134 DC N3 C4 doub N N 135 DC C4 N4 sing N N 136 DC C4 C5 sing N N 137 DC N4 H41 sing N N 138 DC N4 H42 sing N N 139 DC C5 C6 doub N N 140 DC C5 H5 sing N N 141 DC C6 H6 sing N N 142 DG OP3 P sing N N 143 DG OP3 HOP3 sing N N 144 DG P OP1 doub N N 145 DG P OP2 sing N N 146 DG P "O5'" sing N N 147 DG OP2 HOP2 sing N N 148 DG "O5'" "C5'" sing N N 149 DG "C5'" "C4'" sing N N 150 DG "C5'" "H5'" sing N N 151 DG "C5'" "H5''" sing N N 152 DG "C4'" "O4'" sing N N 153 DG "C4'" "C3'" sing N N 154 DG "C4'" "H4'" sing N N 155 DG "O4'" "C1'" sing N N 156 DG "C3'" "O3'" sing N N 157 DG "C3'" "C2'" sing N N 158 DG "C3'" "H3'" sing N N 159 DG "O3'" "HO3'" sing N N 160 DG "C2'" "C1'" sing N N 161 DG "C2'" "H2'" sing N N 162 DG "C2'" "H2''" sing N N 163 DG "C1'" N9 sing N N 164 DG "C1'" "H1'" sing N N 165 DG N9 C8 sing Y N 166 DG N9 C4 sing Y N 167 DG C8 N7 doub Y N 168 DG C8 H8 sing N N 169 DG N7 C5 sing Y N 170 DG C5 C6 sing N N 171 DG C5 C4 doub Y N 172 DG C6 O6 doub N N 173 DG C6 N1 sing N N 174 DG N1 C2 sing N N 175 DG N1 H1 sing N N 176 DG C2 N2 sing N N 177 DG C2 N3 doub N N 178 DG N2 H21 sing N N 179 DG N2 H22 sing N N 180 DG N3 C4 sing N N 181 DT OP3 P sing N N 182 DT OP3 HOP3 sing N N 183 DT P OP1 doub N N 184 DT P OP2 sing N N 185 DT P "O5'" sing N N 186 DT OP2 HOP2 sing N N 187 DT "O5'" "C5'" sing N N 188 DT "C5'" "C4'" sing N N 189 DT "C5'" "H5'" sing N N 190 DT "C5'" "H5''" sing N N 191 DT "C4'" "O4'" sing N N 192 DT "C4'" "C3'" sing N N 193 DT "C4'" "H4'" sing N N 194 DT "O4'" "C1'" sing N N 195 DT "C3'" "O3'" sing N N 196 DT "C3'" "C2'" sing N N 197 DT "C3'" "H3'" sing N N 198 DT "O3'" "HO3'" sing N N 199 DT "C2'" "C1'" sing N N 200 DT "C2'" "H2'" sing N N 201 DT "C2'" "H2''" sing N N 202 DT "C1'" N1 sing N N 203 DT "C1'" "H1'" sing N N 204 DT N1 C2 sing N N 205 DT N1 C6 sing N N 206 DT C2 O2 doub N N 207 DT C2 N3 sing N N 208 DT N3 C4 sing N N 209 DT N3 H3 sing N N 210 DT C4 O4 doub N N 211 DT C4 C5 sing N N 212 DT C5 C7 sing N N 213 DT C5 C6 doub N N 214 DT C7 H71 sing N N 215 DT C7 H72 sing N N 216 DT C7 H73 sing N N 217 DT C6 H6 sing N N 218 GLN N CA sing N N 219 GLN N H sing N N 220 GLN N H2 sing N N 221 GLN CA C sing N N 222 GLN CA CB sing N N 223 GLN CA HA sing N N 224 GLN C O doub N N 225 GLN C OXT sing N N 226 GLN CB CG sing N N 227 GLN CB HB2 sing N N 228 GLN CB HB3 sing N N 229 GLN CG CD sing N N 230 GLN CG HG2 sing N N 231 GLN CG HG3 sing N N 232 GLN CD OE1 doub N N 233 GLN CD NE2 sing N N 234 GLN NE2 HE21 sing N N 235 GLN NE2 HE22 sing N N 236 GLN OXT HXT sing N N 237 GLU N CA sing N N 238 GLU N H sing N N 239 GLU N H2 sing N N 240 GLU CA C sing N N 241 GLU CA CB sing N N 242 GLU CA HA sing N N 243 GLU C O doub N N 244 GLU C OXT sing N N 245 GLU CB CG sing N N 246 GLU CB HB2 sing N N 247 GLU CB HB3 sing N N 248 GLU CG CD sing N N 249 GLU CG HG2 sing N N 250 GLU CG HG3 sing N N 251 GLU CD OE1 doub N N 252 GLU CD OE2 sing N N 253 GLU OE2 HE2 sing N N 254 GLU OXT HXT sing N N 255 GLY N CA sing N N 256 GLY N H sing N N 257 GLY N H2 sing N N 258 GLY CA C sing N N 259 GLY CA HA2 sing N N 260 GLY CA HA3 sing N N 261 GLY C O doub N N 262 GLY C OXT sing N N 263 GLY OXT HXT sing N N 264 HIS N CA sing N N 265 HIS N H sing N N 266 HIS N H2 sing N N 267 HIS CA C sing N N 268 HIS CA CB sing N N 269 HIS CA HA sing N N 270 HIS C O doub N N 271 HIS C OXT sing N N 272 HIS CB CG sing N N 273 HIS CB HB2 sing N N 274 HIS CB HB3 sing N N 275 HIS CG ND1 sing Y N 276 HIS CG CD2 doub Y N 277 HIS ND1 CE1 doub Y N 278 HIS ND1 HD1 sing N N 279 HIS CD2 NE2 sing Y N 280 HIS CD2 HD2 sing N N 281 HIS CE1 NE2 sing Y N 282 HIS CE1 HE1 sing N N 283 HIS NE2 HE2 sing N N 284 HIS OXT HXT sing N N 285 HOH O H1 sing N N 286 HOH O H2 sing N N 287 ILE N CA sing N N 288 ILE N H sing N N 289 ILE N H2 sing N N 290 ILE CA C sing N N 291 ILE CA CB sing N N 292 ILE CA HA sing N N 293 ILE C O doub N N 294 ILE C OXT sing N N 295 ILE CB CG1 sing N N 296 ILE CB CG2 sing N N 297 ILE CB HB sing N N 298 ILE CG1 CD1 sing N N 299 ILE CG1 HG12 sing N N 300 ILE CG1 HG13 sing N N 301 ILE CG2 HG21 sing N N 302 ILE CG2 HG22 sing N N 303 ILE CG2 HG23 sing N N 304 ILE CD1 HD11 sing N N 305 ILE CD1 HD12 sing N N 306 ILE CD1 HD13 sing N N 307 ILE OXT HXT sing N N 308 LEU N CA sing N N 309 LEU N H sing N N 310 LEU N H2 sing N N 311 LEU CA C sing N N 312 LEU CA CB sing N N 313 LEU CA HA sing N N 314 LEU C O doub N N 315 LEU C OXT sing N N 316 LEU CB CG sing N N 317 LEU CB HB2 sing N N 318 LEU CB HB3 sing N N 319 LEU CG CD1 sing N N 320 LEU CG CD2 sing N N 321 LEU CG HG sing N N 322 LEU CD1 HD11 sing N N 323 LEU CD1 HD12 sing N N 324 LEU CD1 HD13 sing N N 325 LEU CD2 HD21 sing N N 326 LEU CD2 HD22 sing N N 327 LEU CD2 HD23 sing N N 328 LEU OXT HXT sing N N 329 LYS N CA sing N N 330 LYS N H sing N N 331 LYS N H2 sing N N 332 LYS CA C sing N N 333 LYS CA CB sing N N 334 LYS CA HA sing N N 335 LYS C O doub N N 336 LYS C OXT sing N N 337 LYS CB CG sing N N 338 LYS CB HB2 sing N N 339 LYS CB HB3 sing N N 340 LYS CG CD sing N N 341 LYS CG HG2 sing N N 342 LYS CG HG3 sing N N 343 LYS CD CE sing N N 344 LYS CD HD2 sing N N 345 LYS CD HD3 sing N N 346 LYS CE NZ sing N N 347 LYS CE HE2 sing N N 348 LYS CE HE3 sing N N 349 LYS NZ HZ1 sing N N 350 LYS NZ HZ2 sing N N 351 LYS NZ HZ3 sing N N 352 LYS OXT HXT sing N N 353 MET N CA sing N N 354 MET N H sing N N 355 MET N H2 sing N N 356 MET CA C sing N N 357 MET CA CB sing N N 358 MET CA HA sing N N 359 MET C O doub N N 360 MET C OXT sing N N 361 MET CB CG sing N N 362 MET CB HB2 sing N N 363 MET CB HB3 sing N N 364 MET CG SD sing N N 365 MET CG HG2 sing N N 366 MET CG HG3 sing N N 367 MET SD CE sing N N 368 MET CE HE1 sing N N 369 MET CE HE2 sing N N 370 MET CE HE3 sing N N 371 MET OXT HXT sing N N 372 PHE N CA sing N N 373 PHE N H sing N N 374 PHE N H2 sing N N 375 PHE CA C sing N N 376 PHE CA CB sing N N 377 PHE CA HA sing N N 378 PHE C O doub N N 379 PHE C OXT sing N N 380 PHE CB CG sing N N 381 PHE CB HB2 sing N N 382 PHE CB HB3 sing N N 383 PHE CG CD1 doub Y N 384 PHE CG CD2 sing Y N 385 PHE CD1 CE1 sing Y N 386 PHE CD1 HD1 sing N N 387 PHE CD2 CE2 doub Y N 388 PHE CD2 HD2 sing N N 389 PHE CE1 CZ doub Y N 390 PHE CE1 HE1 sing N N 391 PHE CE2 CZ sing Y N 392 PHE CE2 HE2 sing N N 393 PHE CZ HZ sing N N 394 PHE OXT HXT sing N N 395 PRO N CA sing N N 396 PRO N CD sing N N 397 PRO N H sing N N 398 PRO CA C sing N N 399 PRO CA CB sing N N 400 PRO CA HA sing N N 401 PRO C O doub N N 402 PRO C OXT sing N N 403 PRO CB CG sing N N 404 PRO CB HB2 sing N N 405 PRO CB HB3 sing N N 406 PRO CG CD sing N N 407 PRO CG HG2 sing N N 408 PRO CG HG3 sing N N 409 PRO CD HD2 sing N N 410 PRO CD HD3 sing N N 411 PRO OXT HXT sing N N 412 SER N CA sing N N 413 SER N H sing N N 414 SER N H2 sing N N 415 SER CA C sing N N 416 SER CA CB sing N N 417 SER CA HA sing N N 418 SER C O doub N N 419 SER C OXT sing N N 420 SER CB OG sing N N 421 SER CB HB2 sing N N 422 SER CB HB3 sing N N 423 SER OG HG sing N N 424 SER OXT HXT sing N N 425 THR N CA sing N N 426 THR N H sing N N 427 THR N H2 sing N N 428 THR CA C sing N N 429 THR CA CB sing N N 430 THR CA HA sing N N 431 THR C O doub N N 432 THR C OXT sing N N 433 THR CB OG1 sing N N 434 THR CB CG2 sing N N 435 THR CB HB sing N N 436 THR OG1 HG1 sing N N 437 THR CG2 HG21 sing N N 438 THR CG2 HG22 sing N N 439 THR CG2 HG23 sing N N 440 THR OXT HXT sing N N 441 TRP N CA sing N N 442 TRP N H sing N N 443 TRP N H2 sing N N 444 TRP CA C sing N N 445 TRP CA CB sing N N 446 TRP CA HA sing N N 447 TRP C O doub N N 448 TRP C OXT sing N N 449 TRP CB CG sing N N 450 TRP CB HB2 sing N N 451 TRP CB HB3 sing N N 452 TRP CG CD1 doub Y N 453 TRP CG CD2 sing Y N 454 TRP CD1 NE1 sing Y N 455 TRP CD1 HD1 sing N N 456 TRP CD2 CE2 doub Y N 457 TRP CD2 CE3 sing Y N 458 TRP NE1 CE2 sing Y N 459 TRP NE1 HE1 sing N N 460 TRP CE2 CZ2 sing Y N 461 TRP CE3 CZ3 doub Y N 462 TRP CE3 HE3 sing N N 463 TRP CZ2 CH2 doub Y N 464 TRP CZ2 HZ2 sing N N 465 TRP CZ3 CH2 sing Y N 466 TRP CZ3 HZ3 sing N N 467 TRP CH2 HH2 sing N N 468 TRP OXT HXT sing N N 469 TYR N CA sing N N 470 TYR N H sing N N 471 TYR N H2 sing N N 472 TYR CA C sing N N 473 TYR CA CB sing N N 474 TYR CA HA sing N N 475 TYR C O doub N N 476 TYR C OXT sing N N 477 TYR CB CG sing N N 478 TYR CB HB2 sing N N 479 TYR CB HB3 sing N N 480 TYR CG CD1 doub Y N 481 TYR CG CD2 sing Y N 482 TYR CD1 CE1 sing Y N 483 TYR CD1 HD1 sing N N 484 TYR CD2 CE2 doub Y N 485 TYR CD2 HD2 sing N N 486 TYR CE1 CZ doub Y N 487 TYR CE1 HE1 sing N N 488 TYR CE2 CZ sing Y N 489 TYR CE2 HE2 sing N N 490 TYR CZ OH sing N N 491 TYR OH HH sing N N 492 TYR OXT HXT sing N N 493 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6M3D 'double helix' 6M3D 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DT 1 1_555 B DA 12 1_555 -0.418 -0.007 -0.039 8.771 -8.949 1.599 1 A_DT1:DA12_B A 1 ? B 12 ? 20 1 1 A DA 2 1_555 B DT 11 1_555 0.169 0.156 0.421 13.512 -14.663 7.882 2 A_DA2:DT11_B A 2 ? B 11 ? 20 1 1 A DA 3 1_555 B DT 10 1_555 0.114 0.022 0.102 2.883 -18.508 2.738 3 A_DA3:DT10_B A 3 ? B 10 ? 20 1 1 A DT 4 1_555 B DA 9 1_555 0.395 0.142 -0.109 -0.339 -13.928 3.023 4 A_DT4:DA9_B A 4 ? B 9 ? 20 1 1 A DC 5 1_555 B DG 8 1_555 0.185 -0.244 -0.163 -6.826 -8.413 2.234 5 A_DC5:DG8_B A 5 ? B 8 ? 19 1 1 A DC 6 1_555 B DG 7 1_555 0.287 -0.246 0.165 -1.737 -2.553 2.732 6 A_DC6:DG7_B A 6 ? B 7 ? 19 1 1 A DT 7 1_555 B DA 6 1_555 -0.142 -0.183 -0.270 6.563 -7.004 8.666 7 A_DT7:DA6_B A 7 ? B 6 ? 20 1 1 A DA 8 1_555 B DT 5 1_555 0.099 -0.136 -0.101 0.285 -19.127 5.196 8 A_DA8:DT5_B A 8 ? B 5 ? 20 1 1 A DA 9 1_555 B DT 4 1_555 0.092 -0.012 -0.078 1.593 -12.371 3.450 9 A_DA9:DT4_B A 9 ? B 4 ? 20 1 1 A DT 10 1_555 B DA 3 1_555 0.131 0.001 -0.008 4.494 -15.691 2.288 10 A_DT10:DA3_B A 10 ? B 3 ? 20 1 1 A DC 11 1_555 B DG 2 1_555 0.383 -0.302 -0.099 5.056 -12.383 -0.687 11 A_DC11:DG2_B A 11 ? B 2 ? 19 1 1 A DC 12 1_555 B DG 1 1_555 0.095 -0.235 0.395 -8.186 -3.031 0.829 12 A_DC12:DG1_B A 12 ? B 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DT 1 1_555 B DA 12 1_555 A DA 2 1_555 B DT 11 1_555 0.161 0.584 3.169 -1.757 3.216 39.531 0.494 -0.437 3.195 4.742 2.591 39.693 1 AA_DT1DA2:DT11DA12_BB A 1 ? B 12 ? A 2 ? B 11 ? 1 A DA 2 1_555 B DT 11 1_555 A DA 3 1_555 B DT 10 1_555 -0.464 0.001 3.454 -0.721 -3.989 38.225 0.526 0.610 3.445 -6.070 1.097 38.432 2 AA_DA2DA3:DT10DT11_BB A 2 ? B 11 ? A 3 ? B 10 ? 1 A DA 3 1_555 B DT 10 1_555 A DT 4 1_555 B DA 9 1_555 0.361 -0.615 3.327 2.530 -2.735 33.616 -0.603 -0.200 3.383 -4.710 -4.358 33.816 3 AA_DA3DT4:DA9DT10_BB A 3 ? B 10 ? A 4 ? B 9 ? 1 A DT 4 1_555 B DA 9 1_555 A DC 5 1_555 B DG 8 1_555 0.167 -0.067 3.446 2.419 -0.237 37.522 -0.072 0.074 3.450 -0.369 -3.756 37.597 4 AA_DT4DC5:DG8DA9_BB A 4 ? B 9 ? A 5 ? B 8 ? 1 A DC 5 1_555 B DG 8 1_555 A DC 6 1_555 B DG 7 1_555 -0.802 -0.449 3.324 -2.470 5.235 24.839 -2.537 1.100 3.225 11.965 5.645 25.494 5 AA_DC5DC6:DG7DG8_BB A 5 ? B 8 ? A 6 ? B 7 ? 1 A DC 6 1_555 B DG 7 1_555 A DT 7 1_555 B DA 6 1_555 1.509 0.318 3.144 7.958 5.160 33.214 -0.283 -1.283 3.414 8.805 -13.580 34.505 6 AA_DC6DT7:DA6DG7_BB A 6 ? B 7 ? A 7 ? B 6 ? 1 A DT 7 1_555 B DA 6 1_555 A DA 8 1_555 B DT 5 1_555 -1.066 1.316 3.489 -3.314 2.038 44.696 1.523 1.070 3.608 2.673 4.348 44.856 7 AA_DT7DA8:DT5DA6_BB A 7 ? B 6 ? A 8 ? B 5 ? 1 A DA 8 1_555 B DT 5 1_555 A DA 9 1_555 B DT 4 1_555 0.002 0.004 3.357 -0.336 -1.450 33.977 0.244 -0.058 3.354 -2.480 0.575 34.008 8 AA_DA8DA9:DT4DT5_BB A 8 ? B 5 ? A 9 ? B 4 ? 1 A DA 9 1_555 B DT 4 1_555 A DT 10 1_555 B DA 3 1_555 -0.639 -0.605 3.201 -3.028 -0.285 31.513 -1.057 0.619 3.252 -0.523 5.559 31.655 9 AA_DA9DT10:DA3DT4_BB A 9 ? B 4 ? A 10 ? B 3 ? 1 A DT 10 1_555 B DA 3 1_555 A DC 11 1_555 B DG 2 1_555 -0.080 -0.278 3.279 0.960 3.203 32.318 -1.056 0.311 3.233 5.735 -1.719 32.486 10 AA_DT10DC11:DG2DA3_BB A 10 ? B 3 ? A 11 ? B 2 ? 1 A DC 11 1_555 B DG 2 1_555 A DC 12 1_555 B DG 1 1_555 1.156 -0.749 3.626 -2.386 0.346 35.956 -1.265 -2.239 3.538 0.560 3.860 36.034 11 AA_DC11DC12:DG1DG2_BB A 11 ? B 2 ? A 12 ? B 1 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Japan Society for the Promotion of Science (JSPS)' Japan 26840054 1 'Japan Society for the Promotion of Science (JSPS)' Japan 26330339 2 'Japan Society for the Promotion of Science (JSPS)' Japan JP18H05534 3 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'SODIUM ION' NA 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2HDD _pdbx_initial_refinement_model.details ? # _space_group.name_H-M_alt 'P 1 21 1' _space_group.name_Hall 'P 2yb' _space_group.IT_number 4 _space_group.crystal_system monoclinic _space_group.id 1 #