HEADER APOPTOSIS 03-MAR-20 6M3F TITLE CRYSTAL STRUCTURE OF THE MOUSE ENDONUCLEASE ENDOG(H138A/C110A), SPACE TITLE 2 GROUP P212121 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDONUCLEASE G, MITOCHONDRIAL; COMPND 3 CHAIN: B, C; COMPND 4 SYNONYM: ENDO G; COMPND 5 EC: 3.1.30.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: ENDOG; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ENDOG, APOPTOSIS, DNASE, MITOCHONDRIA EXPDTA X-RAY DIFFRACTION AUTHOR K.H.PARK,E.J.WOO REVDAT 2 27-MAR-24 6M3F 1 REMARK REVDAT 1 12-AUG-20 6M3F 0 JRNL AUTH K.H.PARK,S.M.YOON,H.N.SONG,J.H.YANG,S.E.RYU,E.J.WOO JRNL TITL CRYSTAL STRUCTURE OF THE MOUSE ENDONUCLEASE G. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 526 35 2020 JRNL REFN ESSN 1090-2104 JRNL PMID 32192768 JRNL DOI 10.1016/J.BBRC.2020.03.060 REMARK 2 REMARK 2 RESOLUTION. 1.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.96 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 34168 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 1697 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 10.0000 - 4.4900 1.00 2899 158 0.1826 0.2458 REMARK 3 2 4.4900 - 3.5700 1.00 2812 129 0.1533 0.1865 REMARK 3 3 3.5700 - 3.1200 1.00 2739 137 0.1609 0.2011 REMARK 3 4 3.1200 - 2.8300 1.00 2694 164 0.1744 0.2328 REMARK 3 5 2.8300 - 2.6300 0.99 2728 142 0.1793 0.2370 REMARK 3 6 2.6300 - 2.4700 1.00 2688 142 0.1724 0.2404 REMARK 3 7 2.4700 - 2.3500 0.99 2671 135 0.1670 0.1958 REMARK 3 8 2.3500 - 2.2500 0.99 2693 127 0.1655 0.2336 REMARK 3 9 2.2500 - 2.1600 0.99 2643 144 0.1671 0.2069 REMARK 3 10 2.1600 - 2.0900 0.99 2671 139 0.1708 0.2309 REMARK 3 11 2.0900 - 2.0200 0.98 2659 130 0.1659 0.2046 REMARK 3 12 2.0200 - 1.9600 0.97 2574 150 0.1797 0.2206 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.188 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.923 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3590 REMARK 3 ANGLE : 0.846 4883 REMARK 3 CHIRALITY : 0.055 522 REMARK 3 PLANARITY : 0.006 648 REMARK 3 DIHEDRAL : 1.578 1712 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 17.1582 6.2454 28.8941 REMARK 3 T TENSOR REMARK 3 T11: 0.1277 T22: 0.1423 REMARK 3 T33: 0.1870 T12: -0.0114 REMARK 3 T13: -0.0062 T23: -0.0076 REMARK 3 L TENSOR REMARK 3 L11: 0.5279 L22: 0.6173 REMARK 3 L33: 1.7002 L12: -0.1202 REMARK 3 L13: 0.4070 L23: -0.3381 REMARK 3 S TENSOR REMARK 3 S11: 0.0054 S12: 0.0385 S13: -0.0461 REMARK 3 S21: -0.0059 S22: -0.0082 S23: 0.0002 REMARK 3 S31: -0.0310 S32: 0.0795 S33: 0.0051 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6M3F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1300015701. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 193 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 6D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34168 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.960 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.9 REMARK 200 DATA REDUNDANCY : 11.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.01000 REMARK 200 FOR THE DATA SET : 20.3600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.96 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.13000 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24% PEG 3350, 0.1M HEPES PH7.5, 0.18M REMARK 280 AMMONIUM SULFATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.84650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.59750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.44000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.59750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.84650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.44000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA B 45 REMARK 465 ASP B 46 REMARK 465 LEU B 47 REMARK 465 PRO B 48 REMARK 465 ALA B 49 REMARK 465 LEU B 50 REMARK 465 PRO B 51 REMARK 465 GLY B 52 REMARK 465 GLY B 53 REMARK 465 PRO B 54 REMARK 465 ALA B 55 REMARK 465 GLY B 56 REMARK 465 GLY B 57 REMARK 465 THR B 58 REMARK 465 GLY B 59 REMARK 465 ALA B 283 REMARK 465 GLY B 284 REMARK 465 ASN B 285 REMARK 465 LEU B 286 REMARK 465 LYS B 287 REMARK 465 ALA B 288 REMARK 465 ILE B 289 REMARK 465 THR B 290 REMARK 465 ALA B 291 REMARK 465 GLY B 292 REMARK 465 SER B 293 REMARK 465 ALA C 45 REMARK 465 ASP C 46 REMARK 465 LEU C 47 REMARK 465 PRO C 48 REMARK 465 ALA C 49 REMARK 465 LEU C 50 REMARK 465 PRO C 51 REMARK 465 GLY C 52 REMARK 465 GLY C 53 REMARK 465 PRO C 54 REMARK 465 ALA C 55 REMARK 465 GLY C 56 REMARK 465 GLY C 57 REMARK 465 THR C 58 REMARK 465 GLY C 59 REMARK 465 ARG C 100 REMARK 465 LEU C 101 REMARK 465 ARG C 102 REMARK 465 GLY C 103 REMARK 465 ASP C 104 REMARK 465 GLY C 105 REMARK 465 ASP C 106 REMARK 465 ARG C 107 REMARK 465 SER C 108 REMARK 465 ALA C 109 REMARK 465 ASN C 285 REMARK 465 LEU C 286 REMARK 465 LYS C 287 REMARK 465 ALA C 288 REMARK 465 ILE C 289 REMARK 465 THR C 290 REMARK 465 ALA C 291 REMARK 465 GLY C 292 REMARK 465 SER C 293 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU C 265 CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP C 111 O HOH C 401 2.10 REMARK 500 O HOH C 480 O HOH C 530 2.12 REMARK 500 O LEU B 96 O HOH B 401 2.17 REMARK 500 OE1 GLU C 240 O HOH C 402 2.18 REMARK 500 OE2 GLU C 240 O HOH C 403 2.19 REMARK 500 O HOH B 440 O HOH B 531 2.19 REMARK 500 O HOH B 554 O HOH C 528 2.19 REMARK 500 O HOH B 525 O HOH B 534 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG1 THR B 254 NH2 ARG C 185 2555 1.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU B 61 -12.77 80.31 REMARK 500 ASP B 104 -8.32 78.28 REMARK 500 ARG B 107 102.94 -52.58 REMARK 500 ASN B 171 -75.94 -117.10 REMARK 500 ALA B 281 -7.79 -59.28 REMARK 500 TYR C 64 49.20 -92.51 REMARK 500 ASN C 171 -77.47 -117.65 REMARK 500 VAL C 276 56.90 38.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG B 102 GLY B 103 -143.84 REMARK 500 GLY B 105 ASP B 106 -136.06 REMARK 500 ARG B 107 SER B 108 145.03 REMARK 500 SER B 108 ALA B 109 144.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 560 DISTANCE = 6.26 ANGSTROMS REMARK 525 HOH C 540 DISTANCE = 6.02 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 300 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 138 O REMARK 620 2 GLU B 177 OE1 87.7 REMARK 620 3 HOH B 509 O 123.1 127.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 300 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH C 483 O REMARK 620 2 HOH C 498 O 123.8 REMARK 620 3 HOH C 503 O 82.1 107.1 REMARK 620 4 HOH C 540 O 103.0 119.2 116.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG C 300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6LYF RELATED DB: PDB REMARK 900 SAME PROTEIN MUTANT DBREF 6M3F B 45 293 UNP O08600 NUCG_MOUSE 45 293 DBREF 6M3F C 45 293 UNP O08600 NUCG_MOUSE 45 293 SEQADV 6M3F ALA B 110 UNP O08600 CYS 110 ENGINEERED MUTATION SEQADV 6M3F ALA B 138 UNP O08600 HIS 138 ENGINEERED MUTATION SEQADV 6M3F ALA C 110 UNP O08600 CYS 110 ENGINEERED MUTATION SEQADV 6M3F ALA C 138 UNP O08600 HIS 138 ENGINEERED MUTATION SEQRES 1 B 249 ALA ASP LEU PRO ALA LEU PRO GLY GLY PRO ALA GLY GLY SEQRES 2 B 249 THR GLY GLU LEU ALA LYS TYR GLY LEU PRO GLY VAL ALA SEQRES 3 B 249 GLN LEU ARG SER ARG GLU SER TYR VAL LEU SER TYR ASP SEQRES 4 B 249 PRO ARG THR ARG GLY ALA LEU TRP VAL LEU GLU GLN LEU SEQRES 5 B 249 ARG PRO GLU ARG LEU ARG GLY ASP GLY ASP ARG SER ALA SEQRES 6 B 249 ALA ASP PHE ARG GLU ASP ASP SER VAL HIS ALA TYR HIS SEQRES 7 B 249 ARG ALA THR ASN ALA ASP TYR ARG GLY SER GLY PHE ASP SEQRES 8 B 249 ARG GLY ALA LEU ALA ALA ALA ALA ASN HIS ARG TRP SER SEQRES 9 B 249 GLN ARG ALA MET ASP ASP THR PHE TYR LEU SER ASN VAL SEQRES 10 B 249 ALA PRO GLN VAL PRO HIS LEU ASN GLN ASN ALA TRP ASN SEQRES 11 B 249 ASN LEU GLU ARG TYR SER ARG SER LEU THR ARG THR TYR SEQRES 12 B 249 GLN ASN VAL TYR VAL CYS THR GLY PRO LEU PHE LEU PRO SEQRES 13 B 249 ARG THR GLU ALA ASP GLY LYS SER TYR VAL LYS TYR GLN SEQRES 14 B 249 VAL ILE GLY LYS ASN HIS VAL ALA VAL PRO THR HIS PHE SEQRES 15 B 249 PHE LYS VAL LEU ILE LEU GLU ALA ALA GLY GLY GLN ILE SEQRES 16 B 249 GLU LEU ARG SER TYR VAL MET PRO ASN ALA PRO VAL ASP SEQRES 17 B 249 GLU THR ILE PRO LEU GLU ARG PHE LEU VAL PRO ILE GLU SEQRES 18 B 249 SER ILE GLU ARG ALA SER GLY LEU LEU PHE VAL PRO ASN SEQRES 19 B 249 ILE LEU ALA ARG ALA GLY ASN LEU LYS ALA ILE THR ALA SEQRES 20 B 249 GLY SER SEQRES 1 C 249 ALA ASP LEU PRO ALA LEU PRO GLY GLY PRO ALA GLY GLY SEQRES 2 C 249 THR GLY GLU LEU ALA LYS TYR GLY LEU PRO GLY VAL ALA SEQRES 3 C 249 GLN LEU ARG SER ARG GLU SER TYR VAL LEU SER TYR ASP SEQRES 4 C 249 PRO ARG THR ARG GLY ALA LEU TRP VAL LEU GLU GLN LEU SEQRES 5 C 249 ARG PRO GLU ARG LEU ARG GLY ASP GLY ASP ARG SER ALA SEQRES 6 C 249 ALA ASP PHE ARG GLU ASP ASP SER VAL HIS ALA TYR HIS SEQRES 7 C 249 ARG ALA THR ASN ALA ASP TYR ARG GLY SER GLY PHE ASP SEQRES 8 C 249 ARG GLY ALA LEU ALA ALA ALA ALA ASN HIS ARG TRP SER SEQRES 9 C 249 GLN ARG ALA MET ASP ASP THR PHE TYR LEU SER ASN VAL SEQRES 10 C 249 ALA PRO GLN VAL PRO HIS LEU ASN GLN ASN ALA TRP ASN SEQRES 11 C 249 ASN LEU GLU ARG TYR SER ARG SER LEU THR ARG THR TYR SEQRES 12 C 249 GLN ASN VAL TYR VAL CYS THR GLY PRO LEU PHE LEU PRO SEQRES 13 C 249 ARG THR GLU ALA ASP GLY LYS SER TYR VAL LYS TYR GLN SEQRES 14 C 249 VAL ILE GLY LYS ASN HIS VAL ALA VAL PRO THR HIS PHE SEQRES 15 C 249 PHE LYS VAL LEU ILE LEU GLU ALA ALA GLY GLY GLN ILE SEQRES 16 C 249 GLU LEU ARG SER TYR VAL MET PRO ASN ALA PRO VAL ASP SEQRES 17 C 249 GLU THR ILE PRO LEU GLU ARG PHE LEU VAL PRO ILE GLU SEQRES 18 C 249 SER ILE GLU ARG ALA SER GLY LEU LEU PHE VAL PRO ASN SEQRES 19 C 249 ILE LEU ALA ARG ALA GLY ASN LEU LYS ALA ILE THR ALA SEQRES 20 C 249 GLY SER HET MG B 300 1 HET MG C 300 1 HETNAM MG MAGNESIUM ION FORMUL 3 MG 2(MG 2+) FORMUL 5 HOH *300(H2 O) HELIX 1 AA1 ARG B 97 ARG B 102 1 6 HELIX 2 AA2 HIS B 119 ARG B 123 5 5 HELIX 3 AA3 THR B 125 ARG B 130 1 6 HELIX 4 AA4 ALA B 141 HIS B 145 5 5 HELIX 5 AA5 SER B 148 THR B 155 1 8 HELIX 6 AA6 PHE B 156 SER B 159 5 4 HELIX 7 AA7 VAL B 165 ASN B 171 1 7 HELIX 8 AA8 ASN B 171 LEU B 183 1 13 HELIX 9 AA9 THR B 184 THR B 186 5 3 HELIX 10 AB1 ALA B 235 GLY B 237 5 3 HELIX 11 AB2 PRO B 256 LEU B 261 5 6 HELIX 12 AB3 PRO B 263 GLY B 272 1 10 HELIX 13 AB4 PHE B 275 ALA B 281 1 7 HELIX 14 AB5 HIS C 119 ARG C 123 5 5 HELIX 15 AB6 THR C 125 ARG C 130 1 6 HELIX 16 AB7 ALA C 141 HIS C 145 5 5 HELIX 17 AB8 SER C 148 THR C 155 1 8 HELIX 18 AB9 PHE C 156 SER C 159 5 4 HELIX 19 AC1 VAL C 165 ASN C 171 1 7 HELIX 20 AC2 ASN C 171 LEU C 183 1 13 HELIX 21 AC3 THR C 184 THR C 186 5 3 HELIX 22 AC4 ALA C 235 GLY C 237 5 3 HELIX 23 AC5 PRO C 256 LEU C 261 5 6 HELIX 24 AC6 PRO C 263 GLY C 272 1 10 SHEET 1 AA1 6 GLN B 71 SER B 74 0 SHEET 2 AA1 6 VAL B 79 ASP B 83 -1 O TYR B 82 N GLN B 71 SHEET 3 AA1 6 GLY B 88 LEU B 96 -1 O LEU B 90 N SER B 81 SHEET 4 AA1 6 ASN B 189 LEU B 197 -1 O VAL B 190 N LEU B 96 SHEET 5 AA1 6 HIS B 225 GLU B 233 -1 O VAL B 229 N CYS B 193 SHEET 6 AA1 6 ILE B 239 PRO B 247 -1 O ARG B 242 N LEU B 230 SHEET 1 AA2 2 ASP B 135 ALA B 138 0 SHEET 2 AA2 2 VAL B 161 GLN B 164 -1 O GLN B 164 N ASP B 135 SHEET 1 AA3 4 ARG B 201 THR B 202 0 SHEET 2 AA3 4 SER B 208 ILE B 215 -1 O TYR B 209 N ARG B 201 SHEET 3 AA3 4 SER C 208 ILE C 215 -1 O VAL C 210 N TYR B 212 SHEET 4 AA3 4 ARG C 201 THR C 202 -1 N ARG C 201 O TYR C 209 SHEET 1 AA4 4 VAL B 220 ALA B 221 0 SHEET 2 AA4 4 SER B 208 ILE B 215 -1 N ILE B 215 O VAL B 220 SHEET 3 AA4 4 SER C 208 ILE C 215 -1 O VAL C 210 N TYR B 212 SHEET 4 AA4 4 VAL C 220 ALA C 221 -1 O VAL C 220 N ILE C 215 SHEET 1 AA5 6 LEU C 72 SER C 74 0 SHEET 2 AA5 6 VAL C 79 ASP C 83 -1 O LEU C 80 N ARG C 73 SHEET 3 AA5 6 GLY C 88 LEU C 96 -1 O LEU C 90 N SER C 81 SHEET 4 AA5 6 ASN C 189 LEU C 197 -1 O VAL C 190 N LEU C 96 SHEET 5 AA5 6 HIS C 225 GLU C 233 -1 O ILE C 231 N TYR C 191 SHEET 6 AA5 6 ILE C 239 PRO C 247 -1 O ARG C 242 N LEU C 230 SHEET 1 AA6 2 ASP C 135 ALA C 138 0 SHEET 2 AA6 2 VAL C 161 GLN C 164 -1 O GLN C 164 N ASP C 135 LINK O ALA B 138 MG MG B 300 1555 1555 2.71 LINK OE1 GLU B 177 MG MG B 300 1555 1555 2.65 LINK MG MG B 300 O HOH B 509 1555 1555 2.72 LINK MG MG C 300 O HOH C 483 1555 1555 2.91 LINK MG MG C 300 O HOH C 498 1555 1555 2.54 LINK MG MG C 300 O HOH C 503 1555 1555 2.71 LINK MG MG C 300 O HOH C 540 1555 1555 2.68 SITE 1 AC1 3 ALA B 138 GLU B 177 HOH B 509 SITE 1 AC2 5 ALA C 138 HOH C 483 HOH C 498 HOH C 503 SITE 2 AC2 5 HOH C 540 CRYST1 53.693 68.880 127.195 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018624 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014518 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007862 0.00000