HEADER HYDROLASE 05-MAR-20 6M42 OBSLTE 20-MAY-20 6M42 7C29 TITLE ESTERASE CRME10 MUTANT-D178A COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARBOXYLESTERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SGNH-HYDROLASE FAMILY ESTERASE, CRME10; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CROCEICOCCUS MARINUS; SOURCE 3 ORGANISM_TAXID: 450378; SOURCE 4 VARIANT: E4A9T; SOURCE 5 GENE: A9D14_03620; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ESTERASE CRME10 MUTANT-D178A, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.LI,J.LI REVDAT 2 20-MAY-20 6M42 1 OBSLTE REVDAT 1 18-MAR-20 6M42 0 SPRSDE 18-MAR-20 6M42 6IQ8 JRNL AUTH Z.LI,J.LI JRNL TITL C-TERMINAL SWAPPED DIMERS REVEALED A NEW CATALYTIC MECHANISM JRNL TITL 2 OF SGNH-HYDROLASE FAMILY ESTERASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.24 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3247 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.24 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 18238 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 921 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.6500 - 4.2800 1.00 2596 156 0.1659 0.1922 REMARK 3 2 4.2800 - 3.4000 1.00 2483 144 0.1408 0.1857 REMARK 3 3 3.4000 - 2.9700 1.00 2484 105 0.1730 0.2630 REMARK 3 4 2.9700 - 2.7000 1.00 2457 127 0.1773 0.2831 REMARK 3 5 2.7000 - 2.5100 1.00 2432 135 0.1761 0.2576 REMARK 3 6 2.5100 - 2.3600 1.00 2437 133 0.1749 0.2847 REMARK 3 7 2.3600 - 2.2400 1.00 2428 121 0.1672 0.2905 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.259 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.149 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.68 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2961 REMARK 3 ANGLE : 1.003 4014 REMARK 3 CHIRALITY : 0.068 449 REMARK 3 PLANARITY : 0.006 552 REMARK 3 DIHEDRAL : 16.747 1104 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6M42 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1300016029. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 77.15 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9778 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18262 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.180 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.18700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.3300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.18 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.22 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.44800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.910 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.14_3247 REMARK 200 STARTING MODEL: 4JGG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 250MM CALCIUM ACETATE, 100MM REMARK 280 IMIDAZOLE, PH 8.5, 5% PEG 1000, 3% 1,6-HEXANEDIOL, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.02050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.28600 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.02050 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.28600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -64.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 70.04100 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 70.04100 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 535 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 555 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 3 REMARK 465 GLY A 4 REMARK 465 GLU A 5 REMARK 465 ALA A 6 REMARK 465 ALA A 7 REMARK 465 GLY A 8 REMARK 465 GLN A 9 REMARK 465 GLN A 10 REMARK 465 ALA A 11 REMARK 465 ASP A 12 REMARK 465 ALA A 13 REMARK 465 VAL A 14 REMARK 465 MET A 15 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ASP B 3 REMARK 465 GLY B 4 REMARK 465 GLU B 5 REMARK 465 ALA B 6 REMARK 465 ALA B 7 REMARK 465 GLY B 8 REMARK 465 GLN B 9 REMARK 465 GLN B 10 REMARK 465 ALA B 11 REMARK 465 ASP B 12 REMARK 465 ALA B 13 REMARK 465 VAL B 14 REMARK 465 MET B 15 REMARK 465 PRO B 16 REMARK 465 THR B 17 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO A 16 CG CD REMARK 470 THR A 17 CB OG1 CG2 REMARK 470 GLN A 74 CG CD OE1 NE2 REMARK 470 GLU A 106 CG CD OE1 OE2 REMARK 470 LEU A 205 CB CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 196 O HOH B 401 1.56 REMARK 500 OD2 ASP B 37 O HOH B 402 1.87 REMARK 500 O HOH B 401 O HOH B 471 1.98 REMARK 500 OE1 GLN A 117 O HOH A 401 1.99 REMARK 500 O HOH B 478 O HOH B 567 2.12 REMARK 500 OE2 GLU A 107 O HOH A 402 2.13 REMARK 500 O HOH A 541 O HOH A 548 2.15 REMARK 500 OD2 ASP B 188 O HOH B 403 2.15 REMARK 500 O HOH A 403 O HOH A 520 2.16 REMARK 500 OE1 GLN B 117 O HOH B 404 2.16 REMARK 500 OD1 ASP A 154 O HOH A 403 2.16 REMARK 500 O HOH A 421 O HOH A 554 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O ARG B 122 O HOH B 402 3655 2.00 REMARK 500 OH TYR A 156 O HOH A 401 2575 2.06 REMARK 500 O HOH B 553 O HOH B 553 2565 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 162 N PRO A 162 CA -0.135 REMARK 500 PRO A 162 CA PRO A 162 CB 0.156 REMARK 500 PHE A 163 CA PHE A 163 CB 0.154 REMARK 500 PHE A 163 CA PHE A 163 C -0.181 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 162 N - CA - C ANGL. DEV. = 16.3 DEGREES REMARK 500 ASP B 39 CB - CA - C ANGL. DEV. = 13.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 28 -155.23 -112.58 REMARK 500 PHE A 163 55.49 32.52 REMARK 500 ASP B 28 -157.41 -111.71 REMARK 500 PHE B 163 108.92 -171.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 37 OD2 REMARK 620 2 HOH A 446 O 76.7 REMARK 620 3 HOH A 457 O 72.3 93.4 REMARK 620 4 GLU A 86 OE1 8.4 83.8 75.8 REMARK 620 5 HOH A 557 O 142.5 90.2 144.4 139.8 REMARK 620 6 HOH A 436 O 79.7 91.8 149.4 74.9 65.6 REMARK 620 7 HOH A 449 O 128.1 73.9 67.9 135.6 79.1 142.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 304 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 86 OE1 REMARK 620 2 GLU A 86 OE2 52.4 REMARK 620 3 ARG A 122 O 90.9 84.2 REMARK 620 4 HOH A 560 O 136.2 85.1 95.1 REMARK 620 5 HOH A 479 O 87.7 83.9 166.1 76.5 REMARK 620 6 HOH A 459 O 91.4 137.9 121.4 120.9 72.5 REMARK 620 7 HOH A 431 O 150.2 152.0 80.4 73.3 107.3 69.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 88 OD1 REMARK 620 2 ASP A 88 OD2 47.6 REMARK 620 3 HOH A 415 O 127.7 81.3 REMARK 620 4 HOH A 573 O 89.3 125.1 137.6 REMARK 620 5 HOH A 483 O 92.0 78.8 63.5 145.0 REMARK 620 6 HOH A 590 O 156.3 154.7 73.4 76.6 89.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 305 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 86 OE1 REMARK 620 2 GLU B 86 OE2 55.7 REMARK 620 3 ARG B 122 O 94.5 83.4 REMARK 620 4 ASP B 37 OD2 18.7 38.8 84.3 REMARK 620 5 GLU B 40 OE2 24.8 34.1 80.2 6.2 REMARK 620 6 HOH B 547 O 91.3 146.3 94.0 107.6 112.3 REMARK 620 7 HOH B 402 O 123.8 74.5 52.3 105.4 99.2 129.1 REMARK 620 8 HOH B 415 O 168.9 132.5 80.4 163.6 158.0 79.4 60.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 86 OE2 REMARK 620 2 ASP B 123 O 98.7 REMARK 620 3 HOH B 452 O 98.7 90.4 REMARK 620 4 HOH B 499 O 164.4 66.0 79.1 REMARK 620 5 ASP B 37 OD1 71.0 97.5 27.8 106.6 REMARK 620 6 ASP B 37 OD2 74.7 97.6 24.3 103.2 3.7 REMARK 620 7 HOH B 402 O 56.7 69.2 142.8 116.7 121.7 125.2 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 305 DBREF1 6M42 A 1 205 UNP A0A1Z1F9L9_9SPHN DBREF2 6M42 A A0A1Z1F9L9 1 205 DBREF1 6M42 B 1 205 UNP A0A1Z1F9L9_9SPHN DBREF2 6M42 B A0A1Z1F9L9 1 205 SEQADV 6M42 ALA A 178 UNP A0A1Z1F9L ASP 178 ENGINEERED MUTATION SEQADV 6M42 ALA B 178 UNP A0A1Z1F9L ASP 178 ENGINEERED MUTATION SEQRES 1 A 205 MET ALA ASP GLY GLU ALA ALA GLY GLN GLN ALA ASP ALA SEQRES 2 A 205 VAL MET PRO THR GLY PRO ALA ILE ASP VAL LEU ALA PHE SEQRES 3 A 205 GLY ASP SER LEU PHE ALA GLY TYR ARG LEU ASP ARG ASP SEQRES 4 A 205 GLU SER TYR PRO ALA ARG LEU GLN ALA ALA LEU ARG GLU SEQRES 5 A 205 ARG GLY LEU ASN VAL ASN VAL THR ASN ALA GLY VAL SER SEQRES 6 A 205 GLY ASP THR THR ALA ALA GLY LEU GLN ARG ILE ASP PHE SEQRES 7 A 205 VAL LEU ASP SER MET ALA GLY GLU PRO ASP LEU VAL LEU SEQRES 8 A 205 LEU GLU LEU GLY ALA ASN ASP MET LEU ARG GLY LEU PRO SEQRES 9 A 205 ALA GLU GLU ALA ARG ARG ASN LEU ASP THR ILE LEU GLN SEQRES 10 A 205 ARG LEU ASP GLN ARG ASP ILE PRO VAL MET VAL TYR GLY SEQRES 11 A 205 MET ARG ALA ALA PRO ASN LEU GLY GLY ASP TYR GLY ARG SEQRES 12 A 205 SER PHE ASP SER ILE PHE PRO ASP LEU ALA ASP LYS TYR SEQRES 13 A 205 ASP ALA GLU LEU VAL PRO PHE PHE ILE GLU PRO LEU ILE SEQRES 14 A 205 PHE ASP ARG SER LEU VAL GLN GLN ALA GLN LEU HIS PRO SEQRES 15 A 205 THR ALA GLN GLY VAL ASP ALA MET VAL GLU GLN THR VAL SEQRES 16 A 205 GLU GLN VAL GLU ASP ARG ILE ASP ASP LEU SEQRES 1 B 205 MET ALA ASP GLY GLU ALA ALA GLY GLN GLN ALA ASP ALA SEQRES 2 B 205 VAL MET PRO THR GLY PRO ALA ILE ASP VAL LEU ALA PHE SEQRES 3 B 205 GLY ASP SER LEU PHE ALA GLY TYR ARG LEU ASP ARG ASP SEQRES 4 B 205 GLU SER TYR PRO ALA ARG LEU GLN ALA ALA LEU ARG GLU SEQRES 5 B 205 ARG GLY LEU ASN VAL ASN VAL THR ASN ALA GLY VAL SER SEQRES 6 B 205 GLY ASP THR THR ALA ALA GLY LEU GLN ARG ILE ASP PHE SEQRES 7 B 205 VAL LEU ASP SER MET ALA GLY GLU PRO ASP LEU VAL LEU SEQRES 8 B 205 LEU GLU LEU GLY ALA ASN ASP MET LEU ARG GLY LEU PRO SEQRES 9 B 205 ALA GLU GLU ALA ARG ARG ASN LEU ASP THR ILE LEU GLN SEQRES 10 B 205 ARG LEU ASP GLN ARG ASP ILE PRO VAL MET VAL TYR GLY SEQRES 11 B 205 MET ARG ALA ALA PRO ASN LEU GLY GLY ASP TYR GLY ARG SEQRES 12 B 205 SER PHE ASP SER ILE PHE PRO ASP LEU ALA ASP LYS TYR SEQRES 13 B 205 ASP ALA GLU LEU VAL PRO PHE PHE ILE GLU PRO LEU ILE SEQRES 14 B 205 PHE ASP ARG SER LEU VAL GLN GLN ALA GLN LEU HIS PRO SEQRES 15 B 205 THR ALA GLN GLY VAL ASP ALA MET VAL GLU GLN THR VAL SEQRES 16 B 205 GLU GLN VAL GLU ASP ARG ILE ASP ASP LEU HET EDO A 301 4 HET CA A 302 1 HET CA A 303 1 HET CA A 304 1 HET EDO B 301 4 HET CA B 302 1 HET ACT B 303 4 HET ACT B 304 4 HET CA B 305 1 HETNAM EDO 1,2-ETHANEDIOL HETNAM CA CALCIUM ION HETNAM ACT ACETATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 2(C2 H6 O2) FORMUL 4 CA 5(CA 2+) FORMUL 9 ACT 2(C2 H3 O2 1-) FORMUL 12 HOH *366(H2 O) HELIX 1 AA1 ASP A 28 GLY A 33 1 6 HELIX 2 AA2 ASP A 37 GLU A 40 5 4 HELIX 3 AA3 SER A 41 ARG A 53 1 13 HELIX 4 AA4 THR A 68 MET A 83 1 16 HELIX 5 AA5 GLY A 95 GLY A 102 1 8 HELIX 6 AA6 PRO A 104 ARG A 122 1 19 HELIX 7 AA7 GLY A 138 SER A 147 1 10 HELIX 8 AA8 SER A 147 ASP A 157 1 11 HELIX 9 AA9 ILE A 165 ASP A 171 1 7 HELIX 10 AB1 ARG A 172 VAL A 175 5 4 HELIX 11 AB2 THR A 183 ASP A 204 1 22 HELIX 12 AB3 ASP B 28 GLY B 33 1 6 HELIX 13 AB4 ASP B 37 GLU B 40 5 4 HELIX 14 AB5 SER B 41 ARG B 53 1 13 HELIX 15 AB6 THR B 68 SER B 82 1 15 HELIX 16 AB7 GLY B 95 ARG B 101 1 7 HELIX 17 AB8 PRO B 104 ARG B 122 1 19 HELIX 18 AB9 GLY B 138 TYR B 156 1 19 HELIX 19 AC1 ILE B 165 ASP B 171 1 7 HELIX 20 AC2 ARG B 172 VAL B 175 5 4 HELIX 21 AC3 THR B 183 ASP B 204 1 22 SHEET 1 AA1 5 VAL A 57 GLY A 63 0 SHEET 2 AA1 5 ILE A 21 GLY A 27 1 N ILE A 21 O ASN A 58 SHEET 3 AA1 5 LEU A 89 GLU A 93 1 O LEU A 91 N LEU A 24 SHEET 4 AA1 5 VAL A 126 TYR A 129 1 O TYR A 129 N LEU A 92 SHEET 5 AA1 5 GLU A 159 VAL A 161 1 O VAL A 161 N VAL A 128 SHEET 1 AA2 5 VAL B 57 GLY B 63 0 SHEET 2 AA2 5 ILE B 21 GLY B 27 1 N VAL B 23 O THR B 60 SHEET 3 AA2 5 LEU B 89 GLU B 93 1 O LEU B 91 N LEU B 24 SHEET 4 AA2 5 VAL B 126 TYR B 129 1 O MET B 127 N LEU B 92 SHEET 5 AA2 5 GLU B 159 VAL B 161 1 O GLU B 159 N VAL B 128 LINK OD2 ASP A 37 CA CA A 303 1555 1555 2.40 LINK OE1 GLU A 86 CA CA A 304 1555 1555 2.44 LINK OE2 GLU A 86 CA CA A 304 1555 1555 2.53 LINK OD1 ASP A 88 CA CA A 302 1555 1555 2.73 LINK OD2 ASP A 88 CA CA A 302 1555 1555 2.76 LINK O ARG A 122 CA CA A 304 1555 1555 2.43 LINK OE1 GLU B 86 CA CA B 305 1555 1555 2.28 LINK OE2 GLU B 86 CA CA B 302 1555 1555 2.32 LINK OE2 GLU B 86 CA CA B 305 1555 1555 2.41 LINK O ARG B 122 CA CA B 305 1555 1555 2.47 LINK O ASP B 123 CA CA B 302 1555 1555 2.87 LINK CA CA A 302 O HOH A 415 1555 1555 2.43 LINK CA CA A 302 O HOH A 573 1555 1555 2.62 LINK CA CA A 302 O HOH A 483 1555 1555 2.71 LINK CA CA A 303 O HOH A 446 1555 1555 2.50 LINK CA CA A 303 O HOH A 457 1555 1555 2.49 LINK CA CA A 304 O HOH A 560 1555 1555 2.45 LINK CA CA B 302 O HOH B 452 1555 1555 2.48 LINK CA CA B 302 O HOH B 499 1555 1555 2.27 LINK OE1 GLU A 86 CA CA A 303 1555 3754 2.41 LINK OD1 ASP B 37 CA CA B 302 1555 3645 2.84 LINK OD2 ASP B 37 CA CA B 302 1555 3645 2.31 LINK OD2 ASP B 37 CA CA B 305 1555 3645 2.88 LINK OE2 GLU B 40 CA CA B 305 1555 3645 2.50 LINK CA CA A 302 O HOH A 590 1555 3754 2.37 LINK CA CA A 303 O HOH A 557 1555 3744 2.40 LINK CA CA A 303 O HOH A 436 1555 3744 2.38 LINK CA CA A 303 O HOH A 449 1555 3744 2.84 LINK CA CA A 304 O HOH A 479 1555 3754 2.28 LINK CA CA A 304 O HOH A 459 1555 3754 2.48 LINK CA CA A 304 O HOH A 431 1555 3754 2.49 LINK CA CA B 302 O HOH B 402 1555 3655 3.08 LINK CA CA B 305 O HOH B 547 1555 3655 2.29 LINK CA CA B 305 O HOH B 402 1555 3655 1.92 LINK CA CA B 305 O HOH B 415 1555 3655 2.80 SITE 1 AC1 3 GLN A 179 LEU A 180 HOH A 405 SITE 1 AC2 5 ASP A 88 HOH A 415 HOH A 483 HOH A 573 SITE 2 AC2 5 HOH A 590 SITE 1 AC3 7 ASP A 37 GLU A 86 HOH A 436 HOH A 446 SITE 2 AC3 7 HOH A 449 HOH A 457 HOH A 557 SITE 1 AC4 6 GLU A 86 ARG A 122 HOH A 431 HOH A 459 SITE 2 AC4 6 HOH A 479 HOH A 560 SITE 1 AC5 4 MET B 99 HOH B 450 HOH B 464 HOH B 465 SITE 1 AC6 6 ASP B 37 GLU B 86 ASP B 123 HOH B 402 SITE 2 AC6 6 HOH B 452 HOH B 499 SITE 1 AC7 4 ALA B 20 ASP B 22 GLU B 86 ASP B 88 SITE 1 AC8 7 ASP B 37 GLU B 40 GLU B 86 ARG B 122 SITE 2 AC8 7 HOH B 402 HOH B 415 HOH B 547 CRYST1 65.012 70.041 80.572 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015382 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014277 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012411 0.00000