HEADER HYDROLASE 07-MAR-20 6M4K TITLE X-RAY CRYSTAL STRUCTURE OF WILD TYPE ALPHA-AMYLASE I FROM EISENIA TITLE 2 FETIDA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-AMYLASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EISENIA FETIDA; SOURCE 3 ORGANISM_COMMON: RED WIGGLER WORM; SOURCE 4 ORGANISM_TAXID: 6396; SOURCE 5 GENE: ALPHA-AMYLASE; SOURCE 6 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922 KEYWDS TIM BARREL, GH FAMILY 13, CARBOHYDRASE, COLD-ACTIVE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.HIRANO,K.TSUKAMOTO,S.ARIKI,Y.NAKA,M.UEDA,T.TAMADA REVDAT 3 06-NOV-24 6M4K 1 REMARK REVDAT 2 29-NOV-23 6M4K 1 REMARK REVDAT 1 16-SEP-20 6M4K 0 JRNL AUTH Y.HIRANO,K.TSUKAMOTO,S.ARIKI,Y.NAKA,M.UEDA,T.TAMADA JRNL TITL X-RAY CRYSTALLOGRAPHIC STRUCTURAL STUDIES OF ALPHA-AMYLASE I JRNL TITL 2 FROM EISENIA FETIDA. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 76 834 2020 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 32876059 JRNL DOI 10.1107/S2059798320010165 REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.22 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 160110 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.183 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.051 REMARK 3 FREE R VALUE TEST SET COUNT : 8087 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.2200 - 4.0387 1.00 5389 268 0.1568 0.1751 REMARK 3 2 4.0387 - 3.2058 1.00 5179 278 0.1381 0.1485 REMARK 3 3 3.2058 - 2.8006 1.00 5155 289 0.1620 0.1813 REMARK 3 4 2.8006 - 2.5446 1.00 5099 273 0.1658 0.1856 REMARK 3 5 2.5446 - 2.3622 1.00 5184 226 0.1611 0.1654 REMARK 3 6 2.3622 - 2.2229 1.00 5072 260 0.1545 0.1678 REMARK 3 7 2.2229 - 2.1116 1.00 5125 252 0.1537 0.1636 REMARK 3 8 2.1116 - 2.0197 1.00 5085 250 0.1632 0.1884 REMARK 3 9 2.0197 - 1.9419 1.00 5065 268 0.1655 0.1704 REMARK 3 10 1.9419 - 1.8749 1.00 5080 268 0.1652 0.1821 REMARK 3 11 1.8749 - 1.8163 1.00 5053 283 0.1762 0.2093 REMARK 3 12 1.8163 - 1.7644 1.00 5041 289 0.1791 0.2085 REMARK 3 13 1.7644 - 1.7179 1.00 5059 239 0.1834 0.1932 REMARK 3 14 1.7179 - 1.6760 1.00 5067 283 0.1839 0.1979 REMARK 3 15 1.6760 - 1.6379 1.00 5023 283 0.1835 0.2095 REMARK 3 16 1.6379 - 1.6030 1.00 4995 271 0.1857 0.2038 REMARK 3 17 1.6030 - 1.5710 1.00 5056 259 0.1889 0.2189 REMARK 3 18 1.5710 - 1.5413 1.00 5056 275 0.1927 0.2302 REMARK 3 19 1.5413 - 1.5138 1.00 5034 292 0.1944 0.2024 REMARK 3 20 1.5138 - 1.4881 1.00 4954 322 0.1947 0.2090 REMARK 3 21 1.4881 - 1.4641 1.00 5037 285 0.2016 0.2156 REMARK 3 22 1.4641 - 1.4416 1.00 4991 302 0.2128 0.2265 REMARK 3 23 1.4416 - 1.4204 1.00 5062 244 0.2160 0.2314 REMARK 3 24 1.4204 - 1.4004 1.00 5027 260 0.2197 0.2314 REMARK 3 25 1.4004 - 1.3815 1.00 5020 276 0.2227 0.2180 REMARK 3 26 1.3815 - 1.3635 1.00 5065 224 0.2259 0.2430 REMARK 3 27 1.3635 - 1.3465 1.00 5027 283 0.2386 0.2455 REMARK 3 28 1.3465 - 1.3302 1.00 5053 246 0.2465 0.2706 REMARK 3 29 1.3302 - 1.3148 1.00 4993 274 0.2514 0.2518 REMARK 3 30 1.3148 - 1.3000 1.00 4977 265 0.2626 0.2691 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.113 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.932 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.55 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 4728 REMARK 3 ANGLE : 0.856 6469 REMARK 3 CHIRALITY : 0.082 636 REMARK 3 PLANARITY : 0.006 883 REMARK 3 DIHEDRAL : 13.673 1712 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6M4K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1300016037. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 160191 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 49.220 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.900 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.40 REMARK 200 R MERGE FOR SHELL (I) : 0.85800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1KXQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.3 M LITHIUM SULFATE, 3% (V/V) PEG REMARK 280 400, 0.1 M MAGNESIUM CHLORIDE, 0.1 M SODIUM ACETATE, PH 5.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.32000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.66000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 40.66000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 81.32000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 894 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 899 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 14 REMARK 465 ALA A 15 REMARK 465 GLU A 16 REMARK 465 GLU A 513 REMARK 465 GLN A 514 REMARK 465 LYS A 515 REMARK 465 LEU A 516 REMARK 465 ILE A 517 REMARK 465 SER A 518 REMARK 465 GLU A 519 REMARK 465 GLU A 520 REMARK 465 ASP A 521 REMARK 465 LEU A 522 REMARK 465 ASN A 523 REMARK 465 SER A 524 REMARK 465 ALA A 525 REMARK 465 VAL A 526 REMARK 465 ASP A 527 REMARK 465 HIS A 528 REMARK 465 HIS A 529 REMARK 465 HIS A 530 REMARK 465 HIS A 531 REMARK 465 HIS A 532 REMARK 465 HIS A 533 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 17 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 30 -43.21 -155.11 REMARK 500 MET A 120 -117.58 -107.68 REMARK 500 HIS A 165 -37.04 -132.82 REMARK 500 THR A 328 -55.79 -133.60 REMARK 500 GLU A 334 64.43 -117.19 REMARK 500 TYR A 350 109.75 -167.80 REMARK 500 PHE A 427 -98.78 -132.18 REMARK 500 PHE A 427 -98.36 -133.96 REMARK 500 ASP A 446 32.09 -91.66 REMARK 500 ASP A 446 31.41 -89.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1433 DISTANCE = 6.59 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 601 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 118 OD1 REMARK 620 2 ARG A 174 O 155.9 REMARK 620 3 ASP A 183 OD1 80.9 113.9 REMARK 620 4 ASP A 183 OD2 126.0 76.6 51.7 REMARK 620 5 HIS A 217 O 76.1 80.8 139.8 157.3 REMARK 620 6 HOH A 796 O 117.6 64.6 138.5 90.8 81.7 REMARK 620 7 HOH A 826 O 71.1 127.8 81.9 77.2 119.8 71.5 REMARK 620 8 HOH A1037 O 96.8 73.2 68.6 89.2 81.8 136.5 149.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE A 609 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 610 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 611 DBREF1 6M4K A 18 510 UNP A0A173N065_EISFE DBREF2 6M4K A A0A173N065 18 510 SEQADV 6M4K GLU A 14 UNP A0A173N06 EXPRESSION TAG SEQADV 6M4K ALA A 15 UNP A0A173N06 EXPRESSION TAG SEQADV 6M4K GLU A 16 UNP A0A173N06 EXPRESSION TAG SEQADV 6M4K PHE A 17 UNP A0A173N06 EXPRESSION TAG SEQADV 6M4K PHE A 511 UNP A0A173N06 EXPRESSION TAG SEQADV 6M4K LEU A 512 UNP A0A173N06 EXPRESSION TAG SEQADV 6M4K GLU A 513 UNP A0A173N06 EXPRESSION TAG SEQADV 6M4K GLN A 514 UNP A0A173N06 EXPRESSION TAG SEQADV 6M4K LYS A 515 UNP A0A173N06 EXPRESSION TAG SEQADV 6M4K LEU A 516 UNP A0A173N06 EXPRESSION TAG SEQADV 6M4K ILE A 517 UNP A0A173N06 EXPRESSION TAG SEQADV 6M4K SER A 518 UNP A0A173N06 EXPRESSION TAG SEQADV 6M4K GLU A 519 UNP A0A173N06 EXPRESSION TAG SEQADV 6M4K GLU A 520 UNP A0A173N06 EXPRESSION TAG SEQADV 6M4K ASP A 521 UNP A0A173N06 EXPRESSION TAG SEQADV 6M4K LEU A 522 UNP A0A173N06 EXPRESSION TAG SEQADV 6M4K ASN A 523 UNP A0A173N06 EXPRESSION TAG SEQADV 6M4K SER A 524 UNP A0A173N06 EXPRESSION TAG SEQADV 6M4K ALA A 525 UNP A0A173N06 EXPRESSION TAG SEQADV 6M4K VAL A 526 UNP A0A173N06 EXPRESSION TAG SEQADV 6M4K ASP A 527 UNP A0A173N06 EXPRESSION TAG SEQADV 6M4K HIS A 528 UNP A0A173N06 EXPRESSION TAG SEQADV 6M4K HIS A 529 UNP A0A173N06 EXPRESSION TAG SEQADV 6M4K HIS A 530 UNP A0A173N06 EXPRESSION TAG SEQADV 6M4K HIS A 531 UNP A0A173N06 EXPRESSION TAG SEQADV 6M4K HIS A 532 UNP A0A173N06 EXPRESSION TAG SEQADV 6M4K HIS A 533 UNP A0A173N06 EXPRESSION TAG SEQRES 1 A 520 GLU ALA GLU PHE GLN TYR PHE GLY SER TYR TYR CYS GLN SEQRES 2 A 520 PRO GLY ARG ASP VAL ILE VAL HIS LEU PHE GLU TRP LYS SEQRES 3 A 520 TRP THR ASP ILE GLU ARG GLU CYS GLN TRP LEU ALA ASP SEQRES 4 A 520 HIS ASN TYR CYS GLY VAL GLN VAL SER PRO PRO ASN GLU SEQRES 5 A 520 HIS ARG ILE VAL THR ASP PRO PRO TYR PRO TRP TRP GLN SEQRES 6 A 520 ARG TYR GLN PRO VAL SER TYR THR MET ASN SER ARG SER SEQRES 7 A 520 GLY SER GLU THR GLN PHE ARG ASN MET VAL THR THR CYS SEQRES 8 A 520 ASN ASN LEU GLY VAL TYR ILE TYR VAL ASP GLY VAL LEU SEQRES 9 A 520 ASN HIS MET THR GLY GLY GLY SER GLY THR GLY SER ASP SEQRES 10 A 520 GLY ASN SER PHE ASP GLY ASP SER LEU GLN TYR PRO GLY SEQRES 11 A 520 VAL PRO TYR GLY PRO ASN ASP PHE HIS GLY SER ASP ASP SEQRES 12 A 520 CYS SER THR SER ASP GLY GLU ILE HIS ASP TYR ASN ASN SEQRES 13 A 520 PRO THR GLU VAL ARG ASN CYS ARG LEU SER GLY LEU ARG SEQRES 14 A 520 ASP LEU ASP GLY SER ALA ASN TYR VAL ARG ASP VAL GLU SEQRES 15 A 520 ALA GLU PHE ALA ASN ARG LEU ILE GLY TRP GLY VAL ALA SEQRES 16 A 520 GLY PHE ARG LEU ASP ALA CYS LYS HIS MET TRP PRO GLY SEQRES 17 A 520 ASP LEU GLU ALA ILE LEU GLY ARG LEU ASN GLN LEU ASN SEQRES 18 A 520 THR GLN TRP PHE PRO ALA GLY ARG ASN ALA TYR ILE TYR SEQRES 19 A 520 GLN GLU VAL ILE ASP LEU GLY GLY GLU ALA VAL LYS ALA SEQRES 20 A 520 THR GLU TYR THR TYR LEU GLY ARG VAL THR GLU PHE LYS SEQRES 21 A 520 HIS GLY GLN ASN LEU GLY ASN VAL VAL ARG LYS ASN ASN SEQRES 22 A 520 GLY GLN ARG LEU ALA ASN LEU VAL ASN PHE GLY GLU GLY SEQRES 23 A 520 TRP GLY GLN LEU SER GLY PHE ASP ALA LEU VAL PHE ILE SEQRES 24 A 520 ASP ASN HIS ASP ASN GLN ARG GLY HIS GLY ALA GLY GLY SEQRES 25 A 520 PHE GLY THR ILE LEU THR PHE PHE GLU ALA ASN MET TYR SEQRES 26 A 520 LYS ILE ALA THR ALA PHE GLU LEU ALA TRP ASP TYR GLY SEQRES 27 A 520 HIS VAL ARG LEU MET SER SER TYR ASN TRP PRO ARG ASN SEQRES 28 A 520 ILE VAL ASN GLY VAL ASP THR ASN ASP TRP VAL GLY PRO SEQRES 29 A 520 PRO THR ASN GLY GLY GLY ASP THR LYS ASP VAL GLU CYS SEQRES 30 A 520 PHE ASN GLY GLU TRP ILE CYS GLU HIS ARG TRP ARG GLU SEQRES 31 A 520 MET TYR ASN MET VAL ARG PHE HIS ASN VAL ALA ILE GLY SEQRES 32 A 520 ASN PRO VAL SER ASN TRP TRP ASP ASN GLY PHE GLN ALA SEQRES 33 A 520 ILE ALA PHE GLY ARG GLY ASN ARG GLY PHE ILE PHE ILE SEQRES 34 A 520 ASN ASN GLU ASP PHE ALA ILE THR GLN THR LEU GLN THR SEQRES 35 A 520 GLY LEU PRO GLY GLY GLU TYR CYS ASP VAL ILE SER CYS SEQRES 36 A 520 ASP ASN ASN ARG PRO PRO CYS GLY ASN SER GLY GLY ALA SEQRES 37 A 520 CYS ARG ALA THR VAL ILE VAL ASN GLY ASP GLY THR ALA SEQRES 38 A 520 THR PHE ASP VAL PRO ASN GLY GLU ASN PRO MET ILE ALA SEQRES 39 A 520 ILE HIS VAL PHE LEU GLU GLN LYS LEU ILE SER GLU GLU SEQRES 40 A 520 ASP LEU ASN SER ALA VAL ASP HIS HIS HIS HIS HIS HIS HET CA A 601 1 HET CL A 602 1 HET ACT A 603 4 HET SO4 A 604 5 HET SO4 A 605 5 HET SO4 A 606 5 HET SO4 A 607 5 HET SO4 A 608 5 HET 1PE A 609 16 HET PG4 A 610 13 HET PG4 A 611 13 HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETNAM ACT ACETATE ION HETNAM SO4 SULFATE ION HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM PG4 TETRAETHYLENE GLYCOL HETSYN 1PE PEG400 FORMUL 2 CA CA 2+ FORMUL 3 CL CL 1- FORMUL 4 ACT C2 H3 O2 1- FORMUL 5 SO4 5(O4 S 2-) FORMUL 10 1PE C10 H22 O6 FORMUL 11 PG4 2(C8 H18 O5) FORMUL 13 HOH *733(H2 O) HELIX 1 AA1 LYS A 39 HIS A 53 1 15 HELIX 2 AA2 PRO A 75 GLN A 81 5 7 HELIX 3 AA3 SER A 93 LEU A 107 1 15 HELIX 4 AA4 GLY A 147 PHE A 151 5 5 HELIX 5 AA5 ASN A 169 CYS A 176 1 8 HELIX 6 AA6 ALA A 188 GLY A 206 1 19 HELIX 7 AA7 ALA A 214 MET A 218 5 5 HELIX 8 AA8 TRP A 219 GLY A 228 1 10 HELIX 9 AA9 LYS A 259 TYR A 263 5 5 HELIX 10 AB1 GLU A 271 LYS A 284 1 14 HELIX 11 AB2 ASN A 285 GLN A 288 5 4 HELIX 12 AB3 ARG A 289 PHE A 296 5 8 HELIX 13 AB4 GLY A 297 GLY A 301 5 5 HELIX 14 AB5 SER A 304 PHE A 306 5 3 HELIX 15 AB6 ASP A 316 GLY A 320 5 5 HELIX 16 AB7 THR A 331 PHE A 333 5 3 HELIX 17 AB8 GLU A 334 TRP A 348 1 15 HELIX 18 AB9 CYS A 397 ARG A 400 5 4 HELIX 19 AC1 TRP A 401 ILE A 415 1 15 SHEET 1 AA1 9 ILE A 32 LEU A 35 0 SHEET 2 AA1 9 GLY A 57 VAL A 60 1 O GLN A 59 N VAL A 33 SHEET 3 AA1 9 TYR A 110 GLY A 115 1 O TYR A 112 N VAL A 58 SHEET 4 AA1 9 GLY A 209 LEU A 212 1 O ARG A 211 N GLY A 115 SHEET 5 AA1 9 TYR A 245 GLN A 248 1 O TYR A 247 N LEU A 212 SHEET 6 AA1 9 ARG A 268 THR A 270 1 O THR A 270 N GLN A 248 SHEET 7 AA1 9 ALA A 308 VAL A 310 1 O LEU A 309 N VAL A 269 SHEET 8 AA1 9 HIS A 352 SER A 357 1 O ARG A 354 N VAL A 310 SHEET 9 AA1 9 ILE A 32 LEU A 35 1 N ILE A 32 O LEU A 355 SHEET 1 AA2 2 SER A 125 THR A 127 0 SHEET 2 AA2 2 SER A 133 ASP A 135 -1 O PHE A 134 N GLY A 126 SHEET 1 AA3 2 ILE A 365 VAL A 366 0 SHEET 2 AA3 2 VAL A 369 ASP A 370 -1 O VAL A 369 N VAL A 366 SHEET 1 AA4 4 VAL A 419 ASP A 424 0 SHEET 2 AA4 4 ALA A 429 ARG A 434 -1 O GLY A 433 N SER A 420 SHEET 3 AA4 4 GLY A 438 ASN A 443 -1 O ILE A 442 N ILE A 430 SHEET 4 AA4 4 MET A 505 HIS A 509 -1 O ILE A 506 N PHE A 441 SHEET 1 AA5 2 ILE A 449 GLN A 454 0 SHEET 2 AA5 2 THR A 493 VAL A 498 -1 O PHE A 496 N GLN A 451 SHEET 1 AA6 2 GLY A 460 TYR A 462 0 SHEET 2 AA6 2 VAL A 486 VAL A 488 -1 O VAL A 488 N GLY A 460 SSBOND 1 CYS A 25 CYS A 56 1555 1555 2.03 SSBOND 2 CYS A 47 CYS A 104 1555 1555 2.04 SSBOND 3 CYS A 157 CYS A 176 1555 1555 2.05 SSBOND 4 CYS A 390 CYS A 397 1555 1555 2.06 SSBOND 5 CYS A 463 CYS A 475 1555 1555 2.03 SSBOND 6 CYS A 468 CYS A 482 1555 1555 2.04 LINK OD1 ASN A 118 CA CA A 601 1555 1555 2.42 LINK O ARG A 174 CA CA A 601 1555 1555 2.41 LINK OD1 ASP A 183 CA CA A 601 1555 1555 2.50 LINK OD2 ASP A 183 CA CA A 601 1555 1555 2.53 LINK O HIS A 217 CA CA A 601 1555 1555 2.35 LINK CA CA A 601 O HOH A 796 1555 1555 2.52 LINK CA CA A 601 O HOH A 826 1555 1555 2.49 LINK CA CA A 601 O HOH A1037 1555 1555 2.57 CISPEP 1 ASP A 71 PRO A 72 0 -1.47 CISPEP 2 VAL A 144 PRO A 145 0 -4.81 CISPEP 3 PRO A 473 PRO A 474 0 -0.49 SITE 1 AC1 7 ASN A 118 ARG A 174 ASP A 183 HIS A 217 SITE 2 AC1 7 HOH A 796 HOH A 826 HOH A1037 SITE 1 AC2 3 ARG A 211 ASN A 314 ARG A 354 SITE 1 AC3 4 TYR A 80 HIS A 119 ASP A 213 HOH A 860 SITE 1 AC4 8 ASN A 380 LYS A 386 ASP A 387 HOH A 771 SITE 2 AC4 8 HOH A 773 HOH A 885 HOH A1022 HOH A1144 SITE 1 AC5 8 GLU A 334 ALA A 335 ASN A 336 MET A 337 SITE 2 AC5 8 HOH A 703 HOH A 722 HOH A 817 HOH A1084 SITE 1 AC6 4 LYS A 39 THR A 41 GLN A 96 HOH A 701 SITE 1 AC7 4 ARG A 192 HOH A 725 HOH A 729 HOH A1071 SITE 1 AC8 4 SER A 420 ASN A 421 HOH A 889 HOH A1186 SITE 1 AC9 8 PRO A 378 THR A 379 ASN A 380 GLY A 381 SITE 2 AC9 8 HOH A 723 HOH A 940 HOH A1095 HOH A1098 SITE 1 AD1 4 PRO A 72 TRP A 374 HOH A 793 HOH A 899 SITE 1 AD2 14 GLY A 136 ASP A 137 LEU A 139 SER A 160 SITE 2 AD2 14 ASP A 161 GLY A 162 ARG A 177 ARG A 182 SITE 3 AD2 14 ASN A 417 ARG A 437 HOH A 763 HOH A 767 SITE 4 AD2 14 HOH A 832 HOH A1179 CRYST1 96.245 96.245 121.980 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010390 0.005999 0.000000 0.00000 SCALE2 0.000000 0.011998 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008198 0.00000